EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0023167 (Gene tree)
Gene ID: 36306
Gene Symbol: SmD3
Alias: -
Full Name: Small ribonucleoprotein particle protein SmD3
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1273 bases
Position: chr2R:12168731-12170003
Accession: FBgn0023167
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087094	LSM	PF01423.22	1.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0087986	-	744	-	FBpp0087094	151 (aa)	-	O44437

Gene Model

Click here to download FBgn0023167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0023167's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0023167	SmD3	71	83.178	ENSG00000100028	SNRPD3	98	88.525	Homo_sapiens
FBgn0023167	SmD3	71	83.178	ENSAPOG00000007512	snrpd3l	83	83.962	Acanthochromis_polyacanthus
FBgn0023167	SmD3	71	83.178	ENSAMEG00000013935	SNRPD3	84	83.962	Ailuropoda_melanoleuca
FBgn0023167	SmD3	71	83.178	ENSACIG00000008871	snrpd3l	83	83.962	Amphilophus_citrinellus
FBgn0023167	SmD3	71	83.178	ENSAOCG00000016743	snrpd3l	83	83.962	Amphiprion_ocellaris
FBgn0023167	SmD3	71	83.178	ENSAOCG00000022442	-	83	83.962	Amphiprion_ocellaris
FBgn0023167	SmD3	71	83.178	ENSAOCG00000008497	SNRPD3	83	83.962	Amphiprion_ocellaris
FBgn0023167	SmD3	70	83.962	ENSAOCG00000016759	-	98	83.962	Amphiprion_ocellaris
FBgn0023167	SmD3	70	83.962	ENSAPEG00000006260	-	98	83.962	Amphiprion_percula
FBgn0023167	SmD3	71	83.178	ENSAPEG00000006273	snrpd3l	83	83.962	Amphiprion_percula
FBgn0023167	SmD3	71	83.178	ENSATEG00000020556	snrpd3l	76	83.962	Anabas_testudineus
FBgn0023167	SmD3	71	83.178	ENSAPLG00000008670	SNRPD3	84	83.962	Anas_platyrhynchos
FBgn0023167	SmD3	71	83.178	ENSANAG00000026106	SNRPD3	89	83.962	Aotus_nancymaae
FBgn0023167	SmD3	71	83.178	ENSACLG00000021295	snrpd3l	83	83.962	Astatotilapia_calliptera
FBgn0023167	SmD3	71	82.243	ENSAMXG00000038984	snrpd3l	83	83.019	Astyanax_mexicanus
FBgn0023167	SmD3	71	83.178	ENSBTAG00000021262	SNRPD3	84	83.962	Bos_taurus
FBgn0023167	SmD3	85	61.314	WBGene00004914	snr-1	82	64.286	Caenorhabditis_elegans
FBgn0023167	SmD3	71	83.178	ENSCJAG00000009630	SNRPD3	89	83.962	Callithrix_jacchus
FBgn0023167	SmD3	71	83.178	ENSCAFG00000013864	-	84	83.962	Canis_familiaris
FBgn0023167	SmD3	71	82.243	ENSCAFG00000017258	-	84	83.019	Canis_familiaris
FBgn0023167	SmD3	71	83.178	ENSCAFG00020007165	-	84	83.962	Canis_lupus_dingo
FBgn0023167	SmD3	71	83.178	ENSCHIG00000000057	SNRPD3	84	83.962	Capra_hircus
FBgn0023167	SmD3	71	83.178	ENSTSYG00000007649	SNRPD3	84	83.962	Carlito_syrichta
FBgn0023167	SmD3	71	83.178	ENSCAPG00000016432	-	84	83.962	Cavia_aperea
FBgn0023167	SmD3	71	83.178	ENSCPOG00000033102	-	84	83.962	Cavia_porcellus
FBgn0023167	SmD3	71	83.178	ENSCCAG00000035006	SNRPD3	84	83.962	Cebus_capucinus
FBgn0023167	SmD3	71	83.178	ENSCATG00000038878	SNRPD3	84	83.962	Cercocebus_atys
FBgn0023167	SmD3	71	83.178	ENSCLAG00000011403	SNRPD3	84	83.962	Chinchilla_lanigera
FBgn0023167	SmD3	71	83.178	ENSCSAG00000010694	SNRPD3	84	83.962	Chlorocebus_sabaeus
FBgn0023167	SmD3	71	83.178	ENSCPBG00000002065	SNRPD3	84	83.962	Chrysemys_picta_bellii
FBgn0023167	SmD3	71	78.505	ENSCSAVG00000004708	-	79	79.245	Ciona_savignyi
FBgn0023167	SmD3	71	83.178	ENSCANG00000032106	SNRPD3	84	83.962	Colobus_angolensis_palliatus
FBgn0023167	SmD3	71	83.178	ENSCGRG00001021990	Snrpd3	84	83.962	Cricetulus_griseus_chok1gshd
FBgn0023167	SmD3	71	83.178	ENSCGRG00000004280	Snrpd3	84	83.962	Cricetulus_griseus_crigri
FBgn0023167	SmD3	71	83.178	ENSCVAG00000001276	snrpd3l	83	83.962	Cyprinodon_variegatus
FBgn0023167	SmD3	71	82.243	ENSDARG00000013800	snrpd3	83	83.019	Danio_rerio
FBgn0023167	SmD3	71	82.243	ENSDARG00000076283	snrpd3l	83	83.019	Danio_rerio
FBgn0023167	SmD3	75	63.717	ENSDNOG00000042638	-	84	66.667	Dasypus_novemcinctus
FBgn0023167	SmD3	71	83.178	ENSDNOG00000047424	-	84	83.962	Dasypus_novemcinctus
FBgn0023167	SmD3	81	72.000	ENSDNOG00000018004	-	84	76.147	Dasypus_novemcinctus
FBgn0023167	SmD3	81	69.672	ENSDORG00000027706	-	84	73.585	Dipodomys_ordii
FBgn0023167	SmD3	60	74.725	ENSDORG00000002800	-	82	75.556	Dipodomys_ordii
FBgn0023167	SmD3	71	61.682	ENSDORG00000027169	-	81	63.208	Dipodomys_ordii
FBgn0023167	SmD3	71	83.178	ENSEASG00005000273	SNRPD3	84	83.962	Equus_asinus_asinus
FBgn0023167	SmD3	71	83.178	ENSECAG00000023316	SNRPD3	84	83.962	Equus_caballus
FBgn0023167	SmD3	71	83.178	ENSEEUG00000015518	SNRPD3	85	83.962	Erinaceus_europaeus
FBgn0023167	SmD3	71	83.178	ENSELUG00000010092	snrpd3l	83	83.962	Esox_lucius
FBgn0023167	SmD3	71	82.243	ENSELUG00000001854	snrpd3	83	83.019	Esox_lucius
FBgn0023167	SmD3	71	83.178	ENSFCAG00000001512	SNRPD3	88	83.962	Felis_catus
FBgn0023167	SmD3	71	83.178	ENSFALG00000007303	SNRPD3	84	83.962	Ficedula_albicollis
FBgn0023167	SmD3	71	83.178	ENSFDAG00000010772	SNRPD3	84	83.962	Fukomys_damarensis
FBgn0023167	SmD3	71	83.178	ENSFHEG00000010754	snrpd3l	83	83.962	Fundulus_heteroclitus
FBgn0023167	SmD3	71	82.407	ENSGMOG00000008469	snrpd3l	84	83.178	Gadus_morhua
FBgn0023167	SmD3	71	83.178	ENSGALG00000006596	SNRPD3	84	83.962	Gallus_gallus
FBgn0023167	SmD3	70	83.962	ENSGAFG00000006661	snrpd3l	82	83.962	Gambusia_affinis
FBgn0023167	SmD3	71	82.407	ENSGACG00000017533	snrpd3l	84	83.178	Gasterosteus_aculeatus
FBgn0023167	SmD3	71	83.178	ENSGAGG00000023325	SNRPD3	84	83.962	Gopherus_agassizii
FBgn0023167	SmD3	71	83.178	ENSGGOG00000015640	SNRPD3	84	83.962	Gorilla_gorilla
FBgn0023167	SmD3	71	83.178	ENSHBUG00000001332	snrpd3l	83	83.962	Haplochromis_burtoni
FBgn0023167	SmD3	71	83.178	ENSHGLG00000016496	SNRPD3	84	83.962	Heterocephalus_glaber_female
FBgn0023167	SmD3	71	80.374	ENSHGLG00000009844	-	84	81.132	Heterocephalus_glaber_female
FBgn0023167	SmD3	71	83.178	ENSHGLG00100019304	SNRPD3	84	83.962	Heterocephalus_glaber_male
FBgn0023167	SmD3	71	80.374	ENSHGLG00100011326	-	84	81.132	Heterocephalus_glaber_male
FBgn0023167	SmD3	71	83.178	ENSHCOG00000014396	snrpd3l	83	83.962	Hippocampus_comes
FBgn0023167	SmD3	71	83.178	ENSIPUG00000003083	snrpd3	83	83.962	Ictalurus_punctatus
FBgn0023167	SmD3	71	83.178	ENSSTOG00000025674	SNRPD3	84	83.962	Ictidomys_tridecemlineatus
FBgn0023167	SmD3	71	83.178	ENSJJAG00000013303	Snrpd3	84	83.962	Jaculus_jaculus
FBgn0023167	SmD3	71	83.178	ENSKMAG00000012493	snrpd3l	83	83.962	Kryptolebias_marmoratus
FBgn0023167	SmD3	71	83.178	ENSLBEG00000003202	snrpd3l	83	83.962	Labrus_bergylta
FBgn0023167	SmD3	71	82.243	ENSLACG00000015192	SNRPD3	84	83.019	Latimeria_chalumnae
FBgn0023167	SmD3	71	83.178	ENSLOCG00000006978	snrpd3	89	83.962	Lepisosteus_oculatus
FBgn0023167	SmD3	71	83.178	ENSLAFG00000028180	SNRPD3	84	83.962	Loxodonta_africana
FBgn0023167	SmD3	71	83.178	ENSMFAG00000033628	SNRPD3	84	83.962	Macaca_fascicularis
FBgn0023167	SmD3	71	83.178	ENSMMUG00000000264	SNRPD3	84	83.962	Macaca_mulatta
FBgn0023167	SmD3	71	83.178	ENSMNEG00000020857	SNRPD3	84	83.962	Macaca_nemestrina
FBgn0023167	SmD3	71	83.178	ENSMLEG00000037548	SNRPD3	88	83.962	Mandrillus_leucophaeus
FBgn0023167	SmD3	71	83.178	ENSMZEG00005017664	snrpd3l	83	83.962	Maylandia_zebra
FBgn0023167	SmD3	71	83.178	ENSMAUG00000021393	Snrpd3	84	83.962	Mesocricetus_auratus
FBgn0023167	SmD3	71	83.178	ENSMICG00000034782	SNRPD3	84	83.962	Microcebus_murinus
FBgn0023167	SmD3	71	83.178	ENSMOCG00000009361	Snrpd3	84	83.962	Microtus_ochrogaster
FBgn0023167	SmD3	79	75.000	ENSMMOG00000020985	snrpd3l	67	83.962	Mola_mola
FBgn0023167	SmD3	71	83.178	ENSMODG00000004024	SNRPD3	84	83.962	Monodelphis_domestica
FBgn0023167	SmD3	71	83.178	ENSMALG00000013334	snrpd3l	83	83.962	Monopterus_albus
FBgn0023167	SmD3	71	83.178	MGP_CAROLIEiJ_G0015441	Snrpd3	84	83.962	Mus_caroli
FBgn0023167	SmD3	71	83.178	ENSMUSG00000020180	Snrpd3	84	83.962	Mus_musculus
FBgn0023167	SmD3	71	83.178	MGP_PahariEiJ_G0030857	Snrpd3	84	83.962	Mus_pahari
FBgn0023167	SmD3	71	83.178	MGP_SPRETEiJ_G0016254	Snrpd3	84	83.962	Mus_spretus
FBgn0023167	SmD3	71	83.178	ENSMPUG00000002889	SNRPD3	84	83.962	Mustela_putorius_furo
FBgn0023167	SmD3	71	83.178	ENSMLUG00000009838	SNRPD3	84	83.962	Myotis_lucifugus
FBgn0023167	SmD3	71	83.178	ENSNGAG00000010328	Snrpd3	84	83.962	Nannospalax_galili
FBgn0023167	SmD3	71	83.178	ENSNBRG00000020307	snrpd3l	83	83.962	Neolamprologus_brichardi
FBgn0023167	SmD3	71	83.178	ENSNLEG00000035757	SNRPD3	84	83.962	Nomascus_leucogenys
FBgn0023167	SmD3	71	83.178	ENSMEUG00000003772	SNRPD3	84	83.962	Notamacropus_eugenii
FBgn0023167	SmD3	71	83.178	ENSOPRG00000005763	SNRPD3	84	83.962	Ochotona_princeps
FBgn0023167	SmD3	71	83.178	ENSODEG00000008064	-	84	83.962	Octodon_degus
FBgn0023167	SmD3	71	82.243	ENSODEG00000019354	-	84	83.019	Octodon_degus
FBgn0023167	SmD3	71	79.439	ENSODEG00000020162	-	84	80.189	Octodon_degus
FBgn0023167	SmD3	71	83.178	ENSONIG00000003828	snrpd3l	83	83.962	Oreochromis_niloticus
FBgn0023167	SmD3	71	83.178	ENSOANG00000002463	SNRPD3	84	83.962	Ornithorhynchus_anatinus
FBgn0023167	SmD3	71	83.178	ENSOCUG00000004845	SNRPD3	84	83.962	Oryctolagus_cuniculus
FBgn0023167	SmD3	71	83.178	ENSORLG00000010586	snrpd3l	83	83.962	Oryzias_latipes
FBgn0023167	SmD3	71	83.178	ENSORLG00020011769	snrpd3l	83	83.962	Oryzias_latipes_hni
FBgn0023167	SmD3	71	83.178	ENSORLG00015022940	snrpd3l	83	83.962	Oryzias_latipes_hsok
FBgn0023167	SmD3	74	81.250	ENSOMEG00000022734	snrpd3l	83	83.962	Oryzias_melastigma
FBgn0023167	SmD3	71	83.178	ENSOGAG00000012708	SNRPD3	84	83.962	Otolemur_garnettii
FBgn0023167	SmD3	71	83.178	ENSOARG00000013984	SNRPD3	84	83.962	Ovis_aries
FBgn0023167	SmD3	71	83.178	ENSPPAG00000039191	SNRPD3	84	83.962	Pan_paniscus
FBgn0023167	SmD3	71	83.178	ENSPPRG00000001470	SNRPD3	84	83.962	Panthera_pardus
FBgn0023167	SmD3	71	83.178	ENSPTIG00000016610	SNRPD3	84	83.962	Panthera_tigris_altaica
FBgn0023167	SmD3	71	83.178	ENSPTRG00000014176	SNRPD3	84	83.962	Pan_troglodytes
FBgn0023167	SmD3	71	83.178	ENSPANG00000009279	SNRPD3	88	83.962	Papio_anubis
FBgn0023167	SmD3	71	82.243	ENSPKIG00000006412	snrpd3l	83	83.019	Paramormyrops_kingsleyae
FBgn0023167	SmD3	71	82.243	ENSPSIG00000010022	-	84	83.019	Pelodiscus_sinensis
FBgn0023167	SmD3	71	84.112	ENSPMGG00000004486	snrpd3l	87	84.112	Periophthalmus_magnuspinnatus
FBgn0023167	SmD3	71	83.178	ENSPCIG00000010910	SNRPD3	71	83.962	Phascolarctos_cinereus
FBgn0023167	SmD3	71	83.178	ENSPFOG00000019673	snrpd3l	83	83.962	Poecilia_formosa
FBgn0023167	SmD3	71	83.178	ENSPLAG00000023249	snrpd3l	83	83.962	Poecilia_latipinna
FBgn0023167	SmD3	71	83.178	ENSPMEG00000008482	snrpd3l	83	83.962	Poecilia_mexicana
FBgn0023167	SmD3	74	81.081	ENSPREG00000007532	snrpd3l	87	83.962	Poecilia_reticulata
FBgn0023167	SmD3	71	83.178	ENSPPYG00000011648	SNRPD3	84	83.962	Pongo_abelii
FBgn0023167	SmD3	71	83.178	ENSPCAG00000002065	SNRPD3	84	83.962	Procavia_capensis
FBgn0023167	SmD3	71	83.178	ENSPCOG00000011842	SNRPD3	84	83.962	Propithecus_coquereli
FBgn0023167	SmD3	71	82.243	ENSPVAG00000011405	SNRPD3	84	83.019	Pteropus_vampyrus
FBgn0023167	SmD3	71	83.178	ENSPNYG00000013344	snrpd3l	83	83.962	Pundamilia_nyererei
FBgn0023167	SmD3	71	82.243	ENSPNAG00000010547	snrpd3	83	83.019	Pygocentrus_nattereri
FBgn0023167	SmD3	71	81.308	ENSPNAG00000008683	snrpd3l	83	82.075	Pygocentrus_nattereri
FBgn0023167	SmD3	71	83.178	ENSRNOG00000050410	Snrpd3	84	83.962	Rattus_norvegicus
FBgn0023167	SmD3	71	83.178	ENSRBIG00000029017	SNRPD3	84	83.962	Rhinopithecus_bieti
FBgn0023167	SmD3	71	83.178	ENSRROG00000031152	SNRPD3	84	83.962	Rhinopithecus_roxellana
FBgn0023167	SmD3	58	45.455	YLR147C	SMD3	92	44.086	Saccharomyces_cerevisiae
FBgn0023167	SmD3	71	81.308	ENSSFOG00015014180	snrpd3l	83	82.075	Scleropages_formosus
FBgn0023167	SmD3	71	83.178	ENSSFOG00015007002	snrpd3l	83	83.962	Scleropages_formosus
FBgn0023167	SmD3	71	83.178	ENSSMAG00000019307	snrpd3l	83	83.962	Scophthalmus_maximus
FBgn0023167	SmD3	71	83.178	ENSSDUG00000006870	snrpd3l	83	83.962	Seriola_dumerili
FBgn0023167	SmD3	71	83.178	ENSSLDG00000022664	snrpd3l	83	83.962	Seriola_lalandi_dorsalis
FBgn0023167	SmD3	71	83.178	ENSSARG00000002357	SNRPD3	84	83.962	Sorex_araneus
FBgn0023167	SmD3	71	83.178	ENSSPUG00000014285	SNRPD3	84	83.962	Sphenodon_punctatus
FBgn0023167	SmD3	71	83.178	ENSSSCG00000010058	SNRPD3	84	83.962	Sus_scrofa
FBgn0023167	SmD3	71	83.178	ENSTGUG00000010079	SNRPD3	84	83.962	Taeniopygia_guttata
FBgn0023167	SmD3	70	83.962	ENSTRUG00000023976	snrpd3l	90	83.962	Takifugu_rubripes
FBgn0023167	SmD3	71	83.178	ENSTNIG00000005323	snrpd3l	83	83.962	Tetraodon_nigroviridis
FBgn0023167	SmD3	71	83.178	ENSTBEG00000014334	SNRPD3	84	83.962	Tupaia_belangeri
FBgn0023167	SmD3	71	83.178	ENSTTRG00000006022	SNRPD3	84	83.962	Tursiops_truncatus
FBgn0023167	SmD3	71	83.178	ENSUAMG00000010767	SNRPD3	84	83.962	Ursus_americanus
FBgn0023167	SmD3	71	83.178	ENSUMAG00000001670	SNRPD3	84	83.962	Ursus_maritimus
FBgn0023167	SmD3	71	83.178	ENSVPAG00000000241	SNRPD3	84	83.962	Vicugna_pacos
FBgn0023167	SmD3	70	83.962	ENSVVUG00000019340	SNRPD3	53	83.962	Vulpes_vulpes
FBgn0023167	SmD3	55	89.157	ENSXETG00000024918	snrpd3	65	89.157	Xenopus_tropicalis
FBgn0023167	SmD3	71	83.178	ENSXCOG00000004795	snrpd3l	83	83.962	Xiphophorus_couchianus
FBgn0023167	SmD3	71	83.178	ENSXMAG00000001133	snrpd3l	83	83.962	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	21873635.	IBA	Component
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0007417	central nervous system development	8224829.8878684.	IMP	Process
GO:0007422	peripheral nervous system development	7789767.8878684.	IMP	Process
GO:0007517	muscle organ development	8878684.	IMP	Process
GO:0030182	neuron differentiation	8878684.	IMP	Process
GO:0030532	small nuclear ribonucleoprotein complex	9488472.	TAS	Component
GO:0034715	pICln-Sm protein complex	21873635.	IBA	Component
GO:0034719	SMN-Sm protein complex	21873635.	IBA	Component
GO:0045451	pole plasm oskar mRNA localization	20570937.	IMP	Process
GO:0045495	pole plasm	20570937.20659974.	IDA	Component
GO:0048477	oogenesis	24244416.	IMP	Process
GO:0048542	lymph gland development	8224829.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component