EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0024183 (Gene tree)
Gene ID: 34885
Gene Symbol: vig
Alias: -
Full Name: vasa intronic gene
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 7386 bases
Position: chr2L:15062931-15070316
Accession: FBgn0024183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080277	HABP4_PAI-RBP1	PF04774.15	2.6e-27	1	1
FBpp0080278	HABP4_PAI-RBP1	PF04774.15	2.6e-27	1	1
FBpp0080279	HABP4_PAI-RBP1	PF04774.15	2.6e-27	1	1
FBpp0080280	HABP4_PAI-RBP1	PF04774.15	2.6e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080719	-	1838	-	FBpp0080278	490 (aa)	-	Q9V426
FBtr0080718	-	3209	-	FBpp0080277	490 (aa)	-	Q9V426
FBtr0080720	-	1918	-	FBpp0080279	490 (aa)	-	Q9V426
FBtr0080721	-	3164	-	FBpp0080280	490 (aa)	-	Q9V426

Gene Model

Click here to download FBgn0024183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0024183's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0024183	vig	100	42.063	FBgn0046214	vig2	65	49.315

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	12368260.	ISM	Function
GO:0005515	protein binding	14508492.	IPI	Function
GO:0005634	nucleus	19584931.	IDA	Component
GO:0005700	polytene chromosome	19584931.	IDA	Component
GO:0005703	polytene chromosome puff	19584931.	IDA	Component
GO:0005737	cytoplasm	19584931.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0016246	RNA interference	12368260.	IPI	Process
GO:0016442	RISC complex	14508492.	IDA	Component
GO:0016442	RISC complex	12368260.	IPI	Component
GO:0016442	RISC complex	15145345.	TAS	Component
GO:0070828	heterochromatin organization	19584931.	IMP	Process