EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0024285 (Gene tree)
Gene ID: 34312
Gene Symbol: Srp54
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2134 bases
Position: chr2L:9912911-9915044
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0079471	RRM_1	PF00076.22	6.8e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079875	-	2134	-	FBpp0079471	513 (aa)	-	O61646

Gene Model

Click here to download FBgn0024285's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0024285's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0024285	Srp54	52	40.283	ENSG00000153914	SREK1	82	59.036	Homo_sapiens
FBgn0024285	Srp54	52	40.283	ENSAMEG00000011327	SREK1	53	34.050	Ailuropoda_melanoleuca
FBgn0024285	Srp54	52	39.298	ENSAPLG00000003948	-	71	39.931	Anas_platyrhynchos
FBgn0024285	Srp54	52	40.357	ENSANAG00000031358	SREK1	82	59.036	Aotus_nancymaae
FBgn0024285	Srp54	55	38.816	ENSACLG00000026754	srek1	99	39.203	Astatotilapia_calliptera
FBgn0024285	Srp54	53	38.356	ENSAMXG00000043877	srek1	57	39.085	Astyanax_mexicanus
FBgn0024285	Srp54	52	40.283	ENSBTAG00000007321	SREK1	82	59.036	Bos_taurus
FBgn0024285	Srp54	53	40.559	ENSCJAG00000015950	SREK1	82	59.036	Callithrix_jacchus
FBgn0024285	Srp54	52	40.283	ENSCAFG00000007560	SREK1	52	33.681	Canis_familiaris
FBgn0024285	Srp54	52	40.283	ENSTSYG00000036957	SREK1	82	59.036	Carlito_syrichta
FBgn0024285	Srp54	52	39.860	ENSCPOG00000008925	SREK1	51	39.860	Cavia_porcellus
FBgn0024285	Srp54	52	40.283	ENSCCAG00000020591	SREK1	82	59.036	Cebus_capucinus
FBgn0024285	Srp54	52	40.357	ENSCATG00000031482	SREK1	82	59.036	Cercocebus_atys
FBgn0024285	Srp54	52	39.502	ENSCPBG00000026866	SREK1	84	40.000	Chrysemys_picta_bellii
FBgn0024285	Srp54	52	36.458	ENSCING00000022892	-	70	36.644	Ciona_intestinalis
FBgn0024285	Srp54	57	40.968	ENSCANG00000030421	SREK1	82	59.036	Colobus_angolensis_palliatus
FBgn0024285	Srp54	53	38.947	ENSDARG00000009764	srek1	55	38.947	Danio_rerio
FBgn0024285	Srp54	53	37.013	ENSELUG00000008230	srek1	55	37.662	Esox_lucius
FBgn0024285	Srp54	70	37.105	ENSGAGG00000006087	SREK1	68	52.222	Gopherus_agassizii
FBgn0024285	Srp54	57	40.453	ENSGGOG00000004737	SREK1	82	59.036	Gorilla_gorilla
FBgn0024285	Srp54	54	39.298	ENSIPUG00000016851	srek1	55	39.298	Ictalurus_punctatus
FBgn0024285	Srp54	52	39.860	ENSSTOG00000008850	SREK1	82	59.036	Ictidomys_tridecemlineatus
FBgn0024285	Srp54	52	39.860	ENSLAFG00000013853	SREK1	59	35.636	Loxodonta_africana
FBgn0024285	Srp54	52	40.357	ENSMFAG00000039823	SREK1	82	59.036	Macaca_fascicularis
FBgn0024285	Srp54	56	39.474	ENSMMUG00000014586	SREK1	75	59.036	Macaca_mulatta
FBgn0024285	Srp54	52	40.357	ENSMNEG00000030723	SREK1	82	59.036	Macaca_nemestrina
FBgn0024285	Srp54	52	40.357	ENSMLEG00000039078	SREK1	82	59.036	Mandrillus_leucophaeus
FBgn0024285	Srp54	52	41.608	ENSMAUG00000010066	-	66	32.710	Mesocricetus_auratus
FBgn0024285	Srp54	52	40.283	ENSMICG00000034959	SREK1	82	59.036	Microcebus_murinus
FBgn0024285	Srp54	53	39.661	ENSMALG00000017086	srek1	94	55.294	Monopterus_albus
FBgn0024285	Srp54	52	40.357	ENSNLEG00000003827	SREK1	82	59.036	Nomascus_leucogenys
FBgn0024285	Srp54	52	40.283	ENSOPRG00000012111	SREK1	51	40.283	Ochotona_princeps
FBgn0024285	Srp54	52	40.511	ENSONIG00000011080	srek1	64	40.942	Oreochromis_niloticus
FBgn0024285	Srp54	54	32.323	ENSOMEG00000015817	srek1	55	32.609	Oryzias_melastigma
FBgn0024285	Srp54	52	40.283	ENSOARG00000006005	SREK1	54	39.306	Ovis_aries
FBgn0024285	Srp54	57	38.835	ENSPPAG00000031605	SREK1	75	59.036	Pan_paniscus
FBgn0024285	Srp54	52	40.283	ENSPPRG00000024617	SREK1	82	59.036	Panthera_pardus
FBgn0024285	Srp54	52	40.283	ENSPTIG00000006608	SREK1	82	59.036	Panthera_tigris_altaica
FBgn0024285	Srp54	57	38.835	ENSPTRG00000016936	SREK1	82	59.036	Pan_troglodytes
FBgn0024285	Srp54	52	40.357	ENSPANG00000008953	SREK1	82	59.036	Papio_anubis
FBgn0024285	Srp54	53	37.631	ENSPKIG00000025563	srek1	53	37.993	Paramormyrops_kingsleyae
FBgn0024285	Srp54	52	40.283	ENSPCOG00000026230	SREK1	82	59.036	Propithecus_coquereli
FBgn0024285	Srp54	75	35.561	ENSPNAG00000004328	srek1	58	38.462	Pygocentrus_nattereri
FBgn0024285	Srp54	52	40.283	ENSRBIG00000033818	SREK1	82	59.036	Rhinopithecus_bieti
FBgn0024285	Srp54	52	40.357	ENSRROG00000017210	SREK1	82	59.036	Rhinopithecus_roxellana
FBgn0024285	Srp54	52	40.357	ENSSBOG00000031230	SREK1	82	59.036	Saimiri_boliviensis_boliviensis
FBgn0024285	Srp54	53	38.832	ENSSFOG00015004995	srek1	51	39.576	Scleropages_formosus
FBgn0024285	Srp54	53	37.966	ENSSMAG00000011808	srek1	59	39.437	Scophthalmus_maximus
FBgn0024285	Srp54	52	39.502	ENSSPUG00000016553	SREK1	89	39.858	Sphenodon_punctatus
FBgn0024285	Srp54	81	35.613	ENSTNIG00000013463	srek1	68	40.727	Tetraodon_nigroviridis
FBgn0024285	Srp54	54	38.095	ENSXETG00000021460	srek1	62	39.355	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	9710626.	ISS	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	9710626.	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0008187	poly-pyrimidine tract binding	9710626.	IDA	Function
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component