EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0024698 (Gene tree)
Gene ID: 44250
Gene Symbol: Cpsf160
Alias: -
Full Name: Cleavage and polyadenylation specificity factor 160
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 6142 bases
Position: chr2R:14497347-14503488
Accession: FBgn0024698
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0088317	CPSF_A	PF03178.15	1.6e-94	1	1
FBpp0089163	CPSF_A	PF03178.15	1.7e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0089258	-	4845	-	FBpp0089163	1455 (aa)	-	Q9V726
FBtr0089257	-	4504	-	FBpp0088317	1420 (aa)	-	Q9V726-2

Gene Model

Click here to download FBgn0024698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0024698's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0024698	Cpsf160	100	45.528	ENSG00000071894	CPSF1	99	50.794	Homo_sapiens
FBgn0024698	Cpsf160	100	43.902	ENSAPOG00000019621	cpsf1	100	44.158	Acanthochromis_polyacanthus
FBgn0024698	Cpsf160	67	30.065	ENSAPOG00000005036	ddb1	75	30.065	Acanthochromis_polyacanthus
FBgn0024698	Cpsf160	96	44.616	ENSAMEG00000005557	CPSF1	99	44.765	Ailuropoda_melanoleuca
FBgn0024698	Cpsf160	100	43.616	ENSACIG00000006112	cpsf1	100	43.657	Amphilophus_citrinellus
FBgn0024698	Cpsf160	68	30.065	ENSAOCG00000003066	ddb1	78	30.065	Amphiprion_ocellaris
FBgn0024698	Cpsf160	100	44.777	ENSAOCG00000007120	cpsf1	100	44.758	Amphiprion_ocellaris
FBgn0024698	Cpsf160	68	30.065	ENSAPEG00000000092	ddb1	78	30.065	Amphiprion_percula
FBgn0024698	Cpsf160	100	44.756	ENSAPEG00000005755	cpsf1	100	44.632	Amphiprion_percula
FBgn0024698	Cpsf160	63	30.065	ENSATEG00000020571	ddb1	74	30.065	Anabas_testudineus
FBgn0024698	Cpsf160	100	43.845	ENSATEG00000011097	cpsf1	100	44.232	Anabas_testudineus
FBgn0024698	Cpsf160	93	42.837	ENSACAG00000009655	CPSF1	100	42.632	Anolis_carolinensis
FBgn0024698	Cpsf160	100	45.424	ENSANAG00000036514	CPSF1	100	45.528	Aotus_nancymaae
FBgn0024698	Cpsf160	100	43.107	ENSACLG00000012231	cpsf1	100	43.280	Astatotilapia_calliptera
FBgn0024698	Cpsf160	99	49.606	ENSAMXG00000008485	cpsf1	100	41.026	Astyanax_mexicanus
FBgn0024698	Cpsf160	100	44.114	ENSBTAG00000008355	CPSF1	100	44.444	Bos_taurus
FBgn0024698	Cpsf160	99	30.608	WBGene00022301	cpsf-1	99	37.249	Caenorhabditis_elegans
FBgn0024698	Cpsf160	100	45.491	ENSCJAG00000021421	CPSF1	100	45.595	Callithrix_jacchus
FBgn0024698	Cpsf160	96	45.211	ENSCAFG00000001600	CPSF1	99	45.320	Canis_familiaris
FBgn0024698	Cpsf160	100	44.916	ENSCAFG00020020821	CPSF1	100	45.020	Canis_lupus_dingo
FBgn0024698	Cpsf160	100	42.992	ENSCHIG00000015833	CPSF1	100	43.050	Capra_hircus
FBgn0024698	Cpsf160	100	45.124	ENSTSYG00000028560	CPSF1	100	54.348	Carlito_syrichta
FBgn0024698	Cpsf160	96	44.320	ENSCAPG00000014921	CPSF1	98	44.219	Cavia_aperea
FBgn0024698	Cpsf160	100	44.064	ENSCPOG00000011448	CPSF1	100	43.968	Cavia_porcellus
FBgn0024698	Cpsf160	100	45.491	ENSCCAG00000037658	CPSF1	100	45.595	Cebus_capucinus
FBgn0024698	Cpsf160	100	45.393	ENSCATG00000037234	CPSF1	98	55.202	Cercocebus_atys
FBgn0024698	Cpsf160	100	45.077	ENSCLAG00000012166	CPSF1	100	45.205	Chinchilla_lanigera
FBgn0024698	Cpsf160	100	45.393	ENSCSAG00000008502	CPSF1	100	45.473	Chlorocebus_sabaeus
FBgn0024698	Cpsf160	99	45.034	ENSCPBG00000018910	CPSF1	96	44.799	Chrysemys_picta_bellii
FBgn0024698	Cpsf160	96	39.564	ENSCING00000000514	-	100	39.831	Ciona_intestinalis
FBgn0024698	Cpsf160	100	39.649	ENSCSAVG00000002293	-	99	44.700	Ciona_savignyi
FBgn0024698	Cpsf160	99	43.780	ENSCANG00000032760	CPSF1	99	45.833	Colobus_angolensis_palliatus
FBgn0024698	Cpsf160	100	44.879	ENSCGRG00001016344	Cpsf1	100	44.983	Cricetulus_griseus_chok1gshd
FBgn0024698	Cpsf160	100	44.497	ENSCGRG00000003118	Cpsf1	100	44.602	Cricetulus_griseus_crigri
FBgn0024698	Cpsf160	100	44.828	ENSCSEG00000013464	cpsf1	100	44.534	Cynoglossus_semilaevis
FBgn0024698	Cpsf160	63	30.625	ENSCSEG00000012499	ddb1	72	30.625	Cynoglossus_semilaevis
FBgn0024698	Cpsf160	90	41.659	ENSCVAG00000014059	cpsf1	99	44.907	Cyprinodon_variegatus
FBgn0024698	Cpsf160	63	30.065	ENSCVAG00000019531	ddb1	75	30.065	Cyprinodon_variegatus
FBgn0024698	Cpsf160	100	44.035	ENSDARG00000034178	cpsf1	100	44.214	Danio_rerio
FBgn0024698	Cpsf160	60	31.373	ENSDARG00000074431	ddb1	78	31.373	Danio_rerio
FBgn0024698	Cpsf160	57	40.510	ENSDNOG00000043654	CPSF1	97	40.616	Dasypus_novemcinctus
FBgn0024698	Cpsf160	96	44.958	ENSDORG00000006278	Cpsf1	98	45.327	Dipodomys_ordii
FBgn0024698	Cpsf160	80	50.350	ENSETEG00000006022	CPSF1	82	50.350	Echinops_telfairi
FBgn0024698	Cpsf160	100	45.265	ENSEASG00005010774	CPSF1	100	45.155	Equus_asinus_asinus
FBgn0024698	Cpsf160	100	45.332	ENSECAG00000022209	CPSF1	100	45.222	Equus_caballus
FBgn0024698	Cpsf160	100	45.094	ENSEEUG00000000471	CPSF1	100	45.168	Erinaceus_europaeus
FBgn0024698	Cpsf160	100	44.630	ENSELUG00000012271	cpsf1	100	44.563	Esox_lucius
FBgn0024698	Cpsf160	100	44.966	ENSFDAG00000016060	CPSF1	100	44.923	Fukomys_damarensis
FBgn0024698	Cpsf160	100	44.295	ENSFHEG00000016801	cpsf1	100	44.258	Fundulus_heteroclitus
FBgn0024698	Cpsf160	55	30.625	ENSFHEG00000022133	ddb1	67	30.625	Fundulus_heteroclitus
FBgn0024698	Cpsf160	100	44.527	ENSGMOG00000000796	cpsf1	100	44.474	Gadus_morhua
FBgn0024698	Cpsf160	89	44.436	ENSGAFG00000018890	cpsf1	94	44.436	Gambusia_affinis
FBgn0024698	Cpsf160	100	44.098	ENSGACG00000008703	cpsf1	100	44.061	Gasterosteus_aculeatus
FBgn0024698	Cpsf160	100	42.971	ENSGAGG00000004276	CPSF1	99	45.192	Gopherus_agassizii
FBgn0024698	Cpsf160	100	45.387	ENSGGOG00000016185	CPSF1	100	45.491	Gorilla_gorilla
FBgn0024698	Cpsf160	67	30.065	ENSHBUG00000008873	ddb1	77	30.065	Haplochromis_burtoni
FBgn0024698	Cpsf160	100	44.213	ENSHBUG00000018900	cpsf1	100	44.250	Haplochromis_burtoni
FBgn0024698	Cpsf160	100	45.101	ENSHGLG00000016139	CPSF1	100	45.094	Heterocephalus_glaber_female
FBgn0024698	Cpsf160	100	45.101	ENSHGLG00100009750	CPSF1	100	45.094	Heterocephalus_glaber_male
FBgn0024698	Cpsf160	100	43.696	ENSHCOG00000018509	cpsf1	100	43.808	Hippocampus_comes
FBgn0024698	Cpsf160	63	30.065	ENSHCOG00000018670	ddb1	74	30.065	Hippocampus_comes
FBgn0024698	Cpsf160	100	42.390	ENSIPUG00000011259	cpsf1	100	42.310	Ictalurus_punctatus
FBgn0024698	Cpsf160	96	45.028	ENSSTOG00000009957	CPSF1	98	45.099	Ictidomys_tridecemlineatus
FBgn0024698	Cpsf160	100	45.051	ENSJJAG00000023002	Cpsf1	100	45.192	Jaculus_jaculus
FBgn0024698	Cpsf160	90	51.757	ENSKMAG00000001940	cpsf1	99	51.757	Kryptolebias_marmoratus
FBgn0024698	Cpsf160	63	30.065	ENSKMAG00000002315	ddb1	76	30.065	Kryptolebias_marmoratus
FBgn0024698	Cpsf160	100	44.326	ENSLBEG00000003601	cpsf1	100	44.118	Labrus_bergylta
FBgn0024698	Cpsf160	86	45.890	ENSLACG00000000233	CPSF1	89	47.059	Latimeria_chalumnae
FBgn0024698	Cpsf160	100	42.483	ENSLOCG00000008484	cpsf1	100	42.800	Lepisosteus_oculatus
FBgn0024698	Cpsf160	96	45.404	ENSLAFG00000022601	CPSF1	99	45.640	Loxodonta_africana
FBgn0024698	Cpsf160	100	45.326	ENSMFAG00000037013	CPSF1	98	54.913	Macaca_fascicularis
FBgn0024698	Cpsf160	100	45.393	ENSMMUG00000007380	CPSF1	97	54.573	Macaca_mulatta
FBgn0024698	Cpsf160	96	45.544	ENSMNEG00000043564	CPSF1	99	45.652	Macaca_nemestrina
FBgn0024698	Cpsf160	100	45.393	ENSMLEG00000043010	CPSF1	98	55.202	Mandrillus_leucophaeus
FBgn0024698	Cpsf160	100	44.415	ENSMAMG00000003803	cpsf1	100	44.583	Mastacembelus_armatus
FBgn0024698	Cpsf160	68	30.065	ENSMAMG00000014372	ddb1	78	30.065	Mastacembelus_armatus
FBgn0024698	Cpsf160	67	30.065	ENSMZEG00005013835	ddb1	77	30.065	Maylandia_zebra
FBgn0024698	Cpsf160	100	43.011	ENSMZEG00005001168	cpsf1	100	43.185	Maylandia_zebra
FBgn0024698	Cpsf160	100	45.013	ENSMAUG00000003601	Cpsf1	100	45.118	Mesocricetus_auratus
FBgn0024698	Cpsf160	100	45.406	ENSMICG00000015767	CPSF1	100	45.363	Microcebus_murinus
FBgn0024698	Cpsf160	100	44.916	ENSMOCG00000022758	Cpsf1	100	44.929	Microtus_ochrogaster
FBgn0024698	Cpsf160	100	44.744	ENSMMOG00000021245	cpsf1	100	44.104	Mola_mola
FBgn0024698	Cpsf160	100	45.314	ENSMODG00000010755	CPSF1	100	45.350	Monodelphis_domestica
FBgn0024698	Cpsf160	100	43.804	ENSMALG00000020545	cpsf1	100	43.923	Monopterus_albus
FBgn0024698	Cpsf160	68	30.065	ENSMALG00000014071	ddb1	78	30.065	Monopterus_albus
FBgn0024698	Cpsf160	100	45.094	MGP_CAROLIEiJ_G0019936	Cpsf1	100	45.051	Mus_caroli
FBgn0024698	Cpsf160	100	45.027	ENSMUSG00000034022	Cpsf1	100	44.983	Mus_musculus
FBgn0024698	Cpsf160	100	44.946	MGP_PahariEiJ_G0019946	Cpsf1	100	45.051	Mus_pahari
FBgn0024698	Cpsf160	100	45.027	MGP_SPRETEiJ_G0020839	Cpsf1	100	44.983	Mus_spretus
FBgn0024698	Cpsf160	93	45.618	ENSMPUG00000006419	CPSF1	93	45.428	Mustela_putorius_furo
FBgn0024698	Cpsf160	100	45.314	ENSNGAG00000022460	Cpsf1	100	45.357	Nannospalax_galili
FBgn0024698	Cpsf160	67	30.065	ENSNBRG00000019581	ddb1	77	30.065	Neolamprologus_brichardi
FBgn0024698	Cpsf160	100	42.886	ENSNBRG00000000813	cpsf1	100	42.925	Neolamprologus_brichardi
FBgn0024698	Cpsf160	76	56.962	ENSNLEG00000010633	-	89	56.962	Nomascus_leucogenys
FBgn0024698	Cpsf160	81	45.930	ENSMEUG00000014922	CPSF1	84	45.930	Notamacropus_eugenii
FBgn0024698	Cpsf160	60	50.000	ENSOPRG00000004693	-	71	50.000	Ochotona_princeps
FBgn0024698	Cpsf160	100	45.101	ENSODEG00000013995	CPSF1	100	45.094	Octodon_degus
FBgn0024698	Cpsf160	100	44.527	ENSONIG00000007676	cpsf1	100	44.459	Oreochromis_niloticus
FBgn0024698	Cpsf160	67	30.065	ENSONIG00000005804	ddb1	77	30.065	Oreochromis_niloticus
FBgn0024698	Cpsf160	56	60.000	ENSOANG00000010716	CPSF1	85	60.000	Ornithorhynchus_anatinus
FBgn0024698	Cpsf160	100	43.556	ENSORLG00000013544	cpsf1	92	55.144	Oryzias_latipes
FBgn0024698	Cpsf160	100	43.556	ENSORLG00020021693	cpsf1	92	55.144	Oryzias_latipes_hni
FBgn0024698	Cpsf160	63	31.373	ENSORLG00020001277	ddb1	72	31.373	Oryzias_latipes_hni
FBgn0024698	Cpsf160	100	43.490	ENSORLG00015009979	cpsf1	100	43.857	Oryzias_latipes_hsok
FBgn0024698	Cpsf160	63	30.719	ENSORLG00015002080	ddb1	75	30.719	Oryzias_latipes_hsok
FBgn0024698	Cpsf160	100	43.329	ENSOMEG00000011849	cpsf1	100	43.692	Oryzias_melastigma
FBgn0024698	Cpsf160	63	30.065	ENSOMEG00000006181	ddb1	74	30.065	Oryzias_melastigma
FBgn0024698	Cpsf160	100	45.363	ENSOGAG00000000315	CPSF1	100	45.503	Otolemur_garnettii
FBgn0024698	Cpsf160	100	45.559	ENSPPAG00000019280	CPSF1	100	45.662	Pan_paniscus
FBgn0024698	Cpsf160	100	44.853	ENSPTRG00000051253	-	99	46.606	Pan_troglodytes
FBgn0024698	Cpsf160	100	45.559	ENSPTRG00000049288	-	100	45.662	Pan_troglodytes
FBgn0024698	Cpsf160	96	45.544	ENSPANG00000015005	CPSF1	99	45.652	Papio_anubis
FBgn0024698	Cpsf160	100	44.415	ENSPKIG00000002582	cpsf1	100	44.482	Paramormyrops_kingsleyae
FBgn0024698	Cpsf160	100	45.296	ENSPCIG00000009035	CPSF1	100	45.332	Phascolarctos_cinereus
FBgn0024698	Cpsf160	100	43.828	ENSPFOG00000012870	cpsf1	100	43.857	Poecilia_formosa
FBgn0024698	Cpsf160	100	43.817	ENSPREG00000016307	cpsf1	100	43.851	Poecilia_reticulata
FBgn0024698	Cpsf160	100	41.006	ENSPPYG00000018973	CPSF1	100	41.116	Pongo_abelii
FBgn0024698	Cpsf160	90	50.568	ENSPCAG00000011541	CPSF1	93	50.568	Procavia_capensis
FBgn0024698	Cpsf160	100	43.502	ENSPCOG00000020001	CPSF1	99	45.205	Propithecus_coquereli
FBgn0024698	Cpsf160	91	52.286	ENSPVAG00000006761	CPSF1	91	52.286	Pteropus_vampyrus
FBgn0024698	Cpsf160	100	43.968	ENSPNYG00000004906	cpsf1	100	43.865	Pundamilia_nyererei
FBgn0024698	Cpsf160	100	41.700	ENSPNAG00000024395	cpsf1	100	41.768	Pygocentrus_nattereri
FBgn0024698	Cpsf160	100	45.148	ENSRNOG00000030705	Cpsf1	100	45.253	Rattus_norvegicus
FBgn0024698	Cpsf160	100	45.393	ENSRBIG00000044907	CPSF1	98	54.701	Rhinopithecus_bieti
FBgn0024698	Cpsf160	100	45.393	ENSRROG00000044861	CPSF1	98	54.701	Rhinopithecus_roxellana
FBgn0024698	Cpsf160	96	45.576	ENSSBOG00000027177	CPSF1	99	45.684	Saimiri_boliviensis_boliviensis
FBgn0024698	Cpsf160	100	45.302	ENSSHAG00000006500	CPSF1	100	45.339	Sarcophilus_harrisii
FBgn0024698	Cpsf160	100	43.507	ENSSFOG00015004606	cpsf1	100	44.713	Scleropages_formosus
FBgn0024698	Cpsf160	68	30.719	ENSSMAG00000009495	ddb1	78	30.719	Scophthalmus_maximus
FBgn0024698	Cpsf160	100	43.490	ENSSMAG00000020547	cpsf1	100	43.894	Scophthalmus_maximus
FBgn0024698	Cpsf160	100	45.131	ENSSDUG00000001100	cpsf1	100	45.064	Seriola_dumerili
FBgn0024698	Cpsf160	68	30.065	ENSSDUG00000004642	ddb1	78	30.065	Seriola_dumerili
FBgn0024698	Cpsf160	68	30.065	ENSSLDG00000015804	ddb1	78	30.065	Seriola_lalandi_dorsalis
FBgn0024698	Cpsf160	100	45.077	ENSSLDG00000003619	cpsf1	100	45.034	Seriola_lalandi_dorsalis
FBgn0024698	Cpsf160	89	47.917	ENSSARG00000003643	CPSF1	91	47.917	Sorex_araneus
FBgn0024698	Cpsf160	96	45.245	ENSSPUG00000014396	CPSF1	99	45.105	Sphenodon_punctatus
FBgn0024698	Cpsf160	63	30.065	ENSSPAG00000009888	ddb1	75	30.065	Stegastes_partitus
FBgn0024698	Cpsf160	100	43.664	ENSSPAG00000005349	cpsf1	100	43.984	Stegastes_partitus
FBgn0024698	Cpsf160	100	44.258	ENSSSCG00000005906	CPSF1	100	44.400	Sus_scrofa
FBgn0024698	Cpsf160	94	43.967	ENSTRUG00000013134	cpsf1	99	43.874	Takifugu_rubripes
FBgn0024698	Cpsf160	99	44.482	ENSTNIG00000014027	cpsf1	100	44.326	Tetraodon_nigroviridis
FBgn0024698	Cpsf160	77	45.008	ENSTBEG00000001756	CPSF1	91	45.172	Tupaia_belangeri
FBgn0024698	Cpsf160	88	47.917	ENSTTRG00000001937	CPSF1	89	47.826	Tursiops_truncatus
FBgn0024698	Cpsf160	96	45.423	ENSUAMG00000006476	CPSF1	97	45.570	Ursus_americanus
FBgn0024698	Cpsf160	67	30.065	ENSXETG00000008820	ddb1	77	30.065	Xenopus_tropicalis
FBgn0024698	Cpsf160	100	44.407	ENSXCOG00000003608	cpsf1	100	44.482	Xiphophorus_couchianus
FBgn0024698	Cpsf160	100	44.700	ENSXMAG00000005798	cpsf1	100	44.708	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003730	mRNA 3'-UTR binding	9604891.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	9604891.10908584.	ISS	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	10908584.	ISS	Process
GO:0010508	positive regulation of autophagy	29606597.	IGI	Process
GO:0017022	myosin binding	18045836.	IPI	Function
GO:0098789	pre-mRNA cleavage required for polyadenylation	-	ISS	Process