EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0024804 (Gene tree)
Gene ID: 3354919
Gene Symbol: Dbp80
Alias: -
Full Name: Dead box protein 80
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 142844 bases
Position: chr3L:27279316-27422159
Accession: FBgn0024804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0304165	DEAD	PF00270.29	6.3e-29	1	1
FBpp0304168	DEAD	PF00270.29	1.1e-28	1	1
FBpp0112438	DEAD	PF00270.29	1.6e-28	1	1
FBpp0304166	DEAD	PF00270.29	2e-28	1	1
FBpp0304167	DEAD	PF00270.29	1.7e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0331783	-	1564	-	FBpp0304168	354 (aa)	-	L7EFC0
FBtr0331782	-	1458	-	FBpp0304167	316 (aa)	-	L7EGI4
FBtr0331781	-	1505	-	FBpp0304166	481 (aa)	-	G7H860
FBtr0331780	-	1203	-	FBpp0304165	279 (aa)	-	Q5LK12
FBtr0113715	-	1459	-	FBpp0112438	447 (aa)	-	O61305

Gene Model

Click here to download FBgn0024804's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0024804's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0024804	Dbp80	87	36.131	FBgn0037573	CG7483	92	37.047
FBgn0024804	Dbp80	78	34.137	FBgn0004419	me31B	83	33.243
FBgn0024804	Dbp80	76	37.391	FBgn0001942	eIF4A	85	38.764
FBgn0024804	Dbp80	79	31.436	FBgn0003261	Rm62	69	30.031
FBgn0024804	Dbp80	70	30.804	FBgn0014189	Hel25E	51	30.804
FBgn0024804	Dbp80	78	30.532	FBgn0032919	CG9253	67	30.362
FBgn0024804	Dbp80	78	30.532	FBgn0283442	vas	52	30.252
FBgn0024804	Dbp80	78	31.768	FBgn0037549	CG7878	50	31.768

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0024804	Dbp80	95	43.382	WBGene00011580	ddx-19	86	45.688	Caenorhabditis_elegans
FBgn0024804	Dbp80	88	47.277	YOR046C	DBP5	83	47.277	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0044614	nuclear pore cytoplasmic filaments	-	ISS	Component