EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0024987 (Gene tree)
Gene ID: 31086
Gene Symbol: ssx
Alias: -
Full Name: sister-of-Sex-lethal
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4678 bases
Position: chrX:1370580-1375257
Accession: FBgn0024987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0089110	RRM_5	PF13893.6	4.8e-07	1	1
FBpp0308821	RRM_5	PF13893.6	4.8e-07	1	1
FBpp0308820	RRM_5	PF13893.6	6.3e-07	1	1
FBpp0089110	RRM_1	PF00076.22	2.1e-41	1	2
FBpp0089110	RRM_1	PF00076.22	2.1e-41	2	2
FBpp0308821	RRM_1	PF00076.22	2.1e-41	1	2
FBpp0308821	RRM_1	PF00076.22	2.1e-41	2	2
FBpp0308820	RRM_1	PF00076.22	2.8e-41	1	2
FBpp0308820	RRM_1	PF00076.22	2.8e-41	2	2
FBpp0308819	RRM_1	PF00076.22	4.4e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0339774	-	3635	-	FBpp0308821	443 (aa)	-	F3YD57
FBtr0339772	-	3096	-	FBpp0308819	167 (aa)	-	X2JA35
FBtr0070215	-	3055	-	FBpp0089110	443 (aa)	-	Q8IH14
FBtr0339773	-	2945	-	FBpp0308820	485 (aa)	-	O76876

Gene Model

Click here to download FBgn0024987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0024987's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0042742	defense response to bacterium	18245331.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component