EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0026259 (Gene tree)
Gene ID: 44261
Gene Symbol: eIF5B
Alias: -
Full Name: eukaryotic translation initiation factor 5B
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 32320 bases
Position: chr3L:3428658-3460977
Accession: FBgn0026259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0301571	IF-2	PF11987.8	2.3e-19	1	1
FBpp0301572	IF-2	PF11987.8	2.3e-19	1	1
FBpp0073003	IF-2	PF11987.8	2.5e-19	1	1
FBpp0301570	IF-2	PF11987.8	2.5e-19	1	1
FBpp0301573	IF-2	PF11987.8	2.5e-19	1	1
FBpp0073003	GTP_EFTU	PF00009.27	1.3e-35	1	1
FBpp0301570	GTP_EFTU	PF00009.27	1.3e-35	1	1
FBpp0301573	GTP_EFTU	PF00009.27	1.3e-35	1	1
FBpp0301571	GTP_EFTU	PF00009.27	1.2e-34	1	1
FBpp0301572	GTP_EFTU	PF00009.27	1.3e-34	1	1
FBpp0301572	MMR_HSR1	PF01926.23	4.8e-08	1	1
FBpp0301571	MMR_HSR1	PF01926.23	4.9e-08	1	1
FBpp0073003	MMR_HSR1	PF01926.23	5.4e-08	1	1
FBpp0301570	MMR_HSR1	PF01926.23	5.4e-08	1	1
FBpp0301573	MMR_HSR1	PF01926.23	5.4e-08	1	1
FBpp0073003	GTP_EFTU_D2	PF03144.25	4.7e-14	1	1
FBpp0301570	GTP_EFTU_D2	PF03144.25	4.7e-14	1	1
FBpp0301573	GTP_EFTU_D2	PF03144.25	4.7e-14	1	1
FBpp0301571	GTP_EFTU_D2	PF03144.25	3.9e-12	1	1
FBpp0301572	GTP_EFTU_D2	PF03144.25	2.3e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0309836	-	4378	-	FBpp0301570	1144 (aa)	-	Q9VZP5
FBtr0309837	-	3952	-	FBpp0301571	1090 (aa)	-	L7X6D0
FBtr0073144	-	4107	-	FBpp0073003	1144 (aa)	-	Q9VZP5
FBtr0309838	-	4006	-	FBpp0301572	1108 (aa)	-	M9ND37
FBtr0309839	-	4403	-	FBpp0301573	1144 (aa)	-	L7X6D0

Gene Model

Click here to download FBgn0026259's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0026259's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0026259	eIF5B	54	70.147	ENSAPOG00000004375	eif5b	52	70.147	Acanthochromis_polyacanthus
FBgn0026259	eIF5B	71	57.455	ENSACIG00000024324	eif5b	61	69.821	Amphilophus_citrinellus
FBgn0026259	eIF5B	54	70.636	ENSAOCG00000018386	eif5b	52	70.636	Amphiprion_ocellaris
FBgn0026259	eIF5B	53	70.530	ENSATEG00000011451	-	62	70.530	Anabas_testudineus
FBgn0026259	eIF5B	54	70.473	ENSATEG00000006765	eif5b	50	70.473	Anabas_testudineus
FBgn0026259	eIF5B	54	70.473	ENSATEG00000011259	eif5b	69	66.154	Anabas_testudineus
FBgn0026259	eIF5B	74	59.255	ENSACAG00000008305	-	51	70.310	Anolis_carolinensis
FBgn0026259	eIF5B	54	70.636	ENSACLG00000005530	eif5b	63	70.636	Astatotilapia_calliptera
FBgn0026259	eIF5B	54	70.799	ENSAMXG00000018383	eif5b	51	70.473	Astyanax_mexicanus
FBgn0026259	eIF5B	54	58.805	WBGene00021857	iffb-1	58	58.805	Caenorhabditis_elegans
FBgn0026259	eIF5B	74	58.542	ENSCAPG00000014619	-	59	69.088	Cavia_aperea
FBgn0026259	eIF5B	74	59.481	ENSCPOG00000011967	-	50	65.905	Cavia_porcellus
FBgn0026259	eIF5B	54	62.276	ENSCSAVG00000008808	-	66	62.276	Ciona_savignyi
FBgn0026259	eIF5B	54	70.147	ENSCSEG00000014153	eif5b	51	70.147	Cynoglossus_semilaevis
FBgn0026259	eIF5B	54	70.799	ENSCVAG00000019619	eif5b	51	70.799	Cyprinodon_variegatus
FBgn0026259	eIF5B	53	70.164	ENSELUG00000001132	eif5b	57	70.164	Esox_lucius
FBgn0026259	eIF5B	54	69.005	ENSGMOG00000002031	eif5b	53	69.005	Gadus_morhua
FBgn0026259	eIF5B	54	69.821	ENSGACG00000010536	eif5b	84	69.821	Gasterosteus_aculeatus
FBgn0026259	eIF5B	54	70.473	ENSGAGG00000022242	-	91	70.473	Gopherus_agassizii
FBgn0026259	eIF5B	54	70.636	ENSHBUG00000023319	eif5b	51	70.636	Haplochromis_burtoni
FBgn0026259	eIF5B	54	69.821	ENSHCOG00000002807	eif5b	51	69.821	Hippocampus_comes
FBgn0026259	eIF5B	54	70.310	ENSIPUG00000020910	eif5b	53	70.310	Ictalurus_punctatus
FBgn0026259	eIF5B	54	70.962	ENSKMAG00000004325	eif5b	51	70.962	Kryptolebias_marmoratus
FBgn0026259	eIF5B	54	68.994	ENSLBEG00000027090	eif5b	58	68.994	Labrus_bergylta
FBgn0026259	eIF5B	54	69.579	ENSLACG00000011688	eif5b	51	69.579	Latimeria_chalumnae
FBgn0026259	eIF5B	54	70.473	ENSMAMG00000022568	eif5b	51	70.473	Mastacembelus_armatus
FBgn0026259	eIF5B	54	70.636	ENSMZEG00005012696	eif5b	51	70.636	Maylandia_zebra
FBgn0026259	eIF5B	68	59.146	ENSMODG00000001387	-	51	70.147	Monodelphis_domestica
FBgn0026259	eIF5B	54	69.494	ENSMALG00000005862	eif5b	51	69.494	Monopterus_albus
FBgn0026259	eIF5B	54	69.331	ENSNBRG00000021912	eif5b	57	69.331	Neolamprologus_brichardi
FBgn0026259	eIF5B	54	70.636	ENSONIG00000018749	eif5b	51	70.636	Oreochromis_niloticus
FBgn0026259	eIF5B	74	56.257	ENSOANG00000004621	-	52	66.069	Ornithorhynchus_anatinus
FBgn0026259	eIF5B	54	70.799	ENSOCUG00000021154	-	51	70.799	Oryctolagus_cuniculus
FBgn0026259	eIF5B	54	71.289	ENSORLG00000001525	eif5b	52	71.289	Oryzias_latipes
FBgn0026259	eIF5B	54	71.289	ENSORLG00020005327	eif5b	52	71.289	Oryzias_latipes_hni
FBgn0026259	eIF5B	54	71.289	ENSORLG00015008949	eif5b	52	71.289	Oryzias_latipes_hsok
FBgn0026259	eIF5B	54	70.799	ENSOMEG00000016539	eif5b	78	70.799	Oryzias_melastigma
FBgn0026259	eIF5B	54	70.473	ENSPKIG00000011133	eif5b	50	70.473	Paramormyrops_kingsleyae
FBgn0026259	eIF5B	75	58.456	ENSPMAG00000004508	eif5b	51	67.157	Petromyzon_marinus
FBgn0026259	eIF5B	54	70.310	ENSPFOG00000007543	eif5b	88	70.789	Poecilia_formosa
FBgn0026259	eIF5B	54	70.310	ENSPLAG00000015913	eif5b	52	70.310	Poecilia_latipinna
FBgn0026259	eIF5B	54	70.310	ENSPMEG00000006712	eif5b	52	70.310	Poecilia_mexicana
FBgn0026259	eIF5B	58	63.459	ENSPCAG00000007829	-	54	63.957	Procavia_capensis
FBgn0026259	eIF5B	54	66.828	ENSPCOG00000019508	-	100	71.383	Propithecus_coquereli
FBgn0026259	eIF5B	54	70.636	ENSPNYG00000021051	eif5b	77	66.232	Pundamilia_nyererei
FBgn0026259	eIF5B	54	70.799	ENSPNAG00000023852	eif5b	50	70.799	Pygocentrus_nattereri
FBgn0026259	eIF5B	52	52.570	YAL035W	FUN12	60	52.570	Saccharomyces_cerevisiae
FBgn0026259	eIF5B	54	70.799	ENSSFOG00015000594	eif5b	50	70.799	Scleropages_formosus
FBgn0026259	eIF5B	52	65.579	ENSSMAG00000000045	eif5b	60	69.657	Scophthalmus_maximus
FBgn0026259	eIF5B	68	59.653	ENSSDUG00000005847	eif5b	61	69.657	Seriola_dumerili
FBgn0026259	eIF5B	68	59.777	ENSSLDG00000013738	eif5b	66	70.000	Seriola_lalandi_dorsalis
FBgn0026259	eIF5B	54	67.537	ENSSPAG00000005335	eif5b	60	67.537	Stegastes_partitus
FBgn0026259	eIF5B	52	66.558	ENSTRUG00000007772	eif5b	61	70.473	Takifugu_rubripes
FBgn0026259	eIF5B	76	57.849	ENSTNIG00000006580	eif5b	68	70.081	Tetraodon_nigroviridis
FBgn0026259	eIF5B	54	70.962	ENSXETG00000019377	eif5b	52	70.962	Xenopus_tropicalis
FBgn0026259	eIF5B	54	69.156	ENSXCOG00000016681	eif5b	69	69.156	Xiphophorus_couchianus
FBgn0026259	eIF5B	54	69.544	ENSXMAG00000001002	eif5b	69	69.544	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	10908586.	ISS	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005515	protein binding	10678180.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	10908586.	ISS	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0006413	translational initiation	10908586.	ISS	Process
GO:0017151	DEAD/H-box RNA helicase binding	11700288.	TAS	Function