EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0026372 (Gene tree)
Gene ID: 38208
Gene Symbol: RpL23A
Alias: -
Full Name: Ribosomal protein L23A
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 1463 bases
Position: chr3L:1667192-1668654
Accession: FBgn0026372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072687	Ribosomal_L23	PF00276.20	4.4e-13	1	1
FBpp0072687	Ribosomal_L23eN	PF03939.13	5.2e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072805	-	1016	-	FBpp0072687	277 (aa)	-	A1A6X4

Gene Model

Click here to download FBgn0026372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0026372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0026372	RpL23A	54	64.000	ENSCING00000010522	-	99	64.000	Ciona_intestinalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	16889426.	IC	Process
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003735	structural constituent of ribosome	16889426.	HDA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0006412	translation	-	IEA	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0022625	cytosolic large ribosomal subunit	17927810.	TAS	Component
GO:0022626	cytosolic ribosome	16889426.	HDA	Component