EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0026713 (Gene tree)
Gene ID: 32373
Gene Symbol: l(1)G0007
Alias: -
Full Name: lethal (1) G0007
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 23371 bases
Position: chrX:14201362-14224732
Accession: FBgn0026713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073717	DEAD	PF00270.29	3.4e-06	1	1
FBpp0073718	HA2	PF04408.23	5.5e-21	1	1
FBpp0073717	HA2	PF04408.23	1.6e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0073900	-	3880	-	FBpp0073717	1222 (aa)	-	L0CPN8
FBtr0073901	-	1946	-	FBpp0073718	534 (aa)	-	A9YHL0

Gene Model

Click here to download FBgn0026713's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0026713's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0026713	l(1)G0007	87	37.421	FBgn0031631	CG3225	93	40.630
FBgn0026713	l(1)G0007	58	30.435	FBgn0030833	CG8915	59	31.453
FBgn0026713	l(1)G0007	90	45.643	FBgn0086444	l(2)37Cb	72	49.307
FBgn0026713	l(1)G0007	90	48.967	FBgn0086895	pea	66	47.179
FBgn0026713	l(1)G0007	59	30.218	FBgn0032883	Rhau	55	45.128
FBgn0026713	l(1)G0007	87	35.714	FBgn0001330	kz	56	46.473
FBgn0026713	l(1)G0007	87	42.500	FBgn0033160	Dhx15	88	45.750
FBgn0026713	l(1)G0007	86	35.546	FBgn0032194	CG4901	91	39.437

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0026713	l(1)G0007	100	73.198	ENSG00000140829	DHX38	99	63.684	Homo_sapiens
FBgn0026713	l(1)G0007	100	72.222	ENSAPOG00000010788	dhx38	99	59.335	Acanthochromis_polyacanthus
FBgn0026713	l(1)G0007	100	73.198	ENSAMEG00000002227	DHX38	99	59.524	Ailuropoda_melanoleuca
FBgn0026713	l(1)G0007	100	71.852	ENSACIG00000000573	dhx38	99	59.556	Amphilophus_citrinellus
FBgn0026713	l(1)G0007	81	57.445	ENSAOCG00000013483	-	75	67.516	Amphiprion_ocellaris
FBgn0026713	l(1)G0007	100	72.407	ENSAOCG00000007610	dhx38	82	66.764	Amphiprion_ocellaris
FBgn0026713	l(1)G0007	100	72.407	ENSAPEG00000011410	dhx38	99	58.596	Amphiprion_percula
FBgn0026713	l(1)G0007	100	72.171	ENSATEG00000004692	dhx38	99	59.507	Anabas_testudineus
FBgn0026713	l(1)G0007	100	72.643	ENSAPLG00000015279	DHX38	99	62.214	Anas_platyrhynchos
FBgn0026713	l(1)G0007	100	66.667	ENSACAG00000008115	DHX38	99	55.956	Anolis_carolinensis
FBgn0026713	l(1)G0007	100	73.198	ENSANAG00000022259	DHX38	85	66.443	Aotus_nancymaae
FBgn0026713	l(1)G0007	100	67.593	ENSACLG00000001837	dhx38	83	64.050	Astatotilapia_calliptera
FBgn0026713	l(1)G0007	96	71.345	ENSAMXG00000004396	dhx38	81	66.004	Astyanax_mexicanus
FBgn0026713	l(1)G0007	100	73.013	ENSBTAG00000013265	DHX38	84	66.282	Bos_taurus
FBgn0026713	l(1)G0007	99	67.742	WBGene00003389	mog-1	87	61.500	Caenorhabditis_elegans
FBgn0026713	l(1)G0007	100	73.198	ENSCJAG00000015103	DHX38	85	66.347	Callithrix_jacchus
FBgn0026713	l(1)G0007	100	73.198	ENSCAFG00000020228	DHX38	99	59.318	Canis_familiaris
FBgn0026713	l(1)G0007	100	73.198	ENSCAFG00020020392	DHX38	99	59.080	Canis_lupus_dingo
FBgn0026713	l(1)G0007	100	73.013	ENSCHIG00000027105	DHX38	84	66.282	Capra_hircus
FBgn0026713	l(1)G0007	100	73.198	ENSTSYG00000012023	DHX38	85	66.127	Carlito_syrichta
FBgn0026713	l(1)G0007	100	73.198	ENSCAPG00000016032	DHX38	85	65.472	Cavia_aperea
FBgn0026713	l(1)G0007	100	73.198	ENSCPOG00000013965	DHX38	84	66.223	Cavia_porcellus
FBgn0026713	l(1)G0007	100	73.198	ENSCCAG00000031157	DHX38	85	66.443	Cebus_capucinus
FBgn0026713	l(1)G0007	100	62.591	ENSCATG00000036889	DHX38	84	60.857	Cercocebus_atys
FBgn0026713	l(1)G0007	100	73.198	ENSCLAG00000008250	DHX38	85	66.286	Chinchilla_lanigera
FBgn0026713	l(1)G0007	100	73.198	ENSCSAG00000004218	DHX38	85	66.347	Chlorocebus_sabaeus
FBgn0026713	l(1)G0007	99	68.470	ENSCHOG00000009444	-	100	71.893	Choloepus_hoffmanni
FBgn0026713	l(1)G0007	100	72.643	ENSCPBG00000027010	DHX38	84	66.251	Chrysemys_picta_bellii
FBgn0026713	l(1)G0007	94	72.222	ENSCING00000003597	-	87	64.617	Ciona_intestinalis
FBgn0026713	l(1)G0007	100	69.444	ENSCSAVG00000001117	-	100	74.643	Ciona_savignyi
FBgn0026713	l(1)G0007	100	73.198	ENSCANG00000039299	DHX38	85	66.251	Colobus_angolensis_palliatus
FBgn0026713	l(1)G0007	100	73.198	ENSCGRG00001021542	Dhx38	85	66.095	Cricetulus_griseus_chok1gshd
FBgn0026713	l(1)G0007	100	73.198	ENSCGRG00000017386	Dhx38	85	66.095	Cricetulus_griseus_crigri
FBgn0026713	l(1)G0007	100	72.828	ENSCSEG00000008437	dhx38	99	58.764	Cynoglossus_semilaevis
FBgn0026713	l(1)G0007	100	72.593	ENSCVAG00000023150	dhx38	81	67.157	Cyprinodon_variegatus
FBgn0026713	l(1)G0007	100	72.694	ENSDARG00000100013	dhx38	81	67.285	Danio_rerio
FBgn0026713	l(1)G0007	100	73.198	ENSDNOG00000006717	DHX38	99	59.618	Dasypus_novemcinctus
FBgn0026713	l(1)G0007	100	73.198	ENSDORG00000005226	Dhx38	99	59.429	Dipodomys_ordii
FBgn0026713	l(1)G0007	57	79.139	ENSETEG00000014663	-	52	81.136	Echinops_telfairi
FBgn0026713	l(1)G0007	100	74.908	ENSEBUG00000005875	dhx38	99	59.952	Eptatretus_burgeri
FBgn0026713	l(1)G0007	100	73.198	ENSEASG00005013249	DHX38	84	66.897	Equus_asinus_asinus
FBgn0026713	l(1)G0007	100	73.198	ENSECAG00000000526	DHX38	84	66.158	Equus_caballus
FBgn0026713	l(1)G0007	99	68.411	ENSELUG00000014379	dhx38	82	61.886	Esox_lucius
FBgn0026713	l(1)G0007	100	73.198	ENSFCAG00000005831	DHX38	85	66.254	Felis_catus
FBgn0026713	l(1)G0007	100	72.274	ENSFALG00000002671	DHX38	83	65.673	Ficedula_albicollis
FBgn0026713	l(1)G0007	100	73.198	ENSFDAG00000015601	DHX38	85	66.286	Fukomys_damarensis
FBgn0026713	l(1)G0007	100	72.407	ENSFHEG00000006031	dhx38	99	59.904	Fundulus_heteroclitus
FBgn0026713	l(1)G0007	100	72.274	ENSGMOG00000002840	dhx38	82	66.732	Gadus_morhua
FBgn0026713	l(1)G0007	100	72.643	ENSGALG00000000787	DHX38	100	58.786	Gallus_gallus
FBgn0026713	l(1)G0007	100	72.778	ENSGAFG00000017271	dhx38	81	67.255	Gambusia_affinis
FBgn0026713	l(1)G0007	100	72.593	ENSGACG00000015776	dhx38	82	66.764	Gasterosteus_aculeatus
FBgn0026713	l(1)G0007	100	72.643	ENSGAGG00000015601	DHX38	84	66.251	Gopherus_agassizii
FBgn0026713	l(1)G0007	100	73.198	ENSGGOG00000013052	DHX38	85	66.347	Gorilla_gorilla
FBgn0026713	l(1)G0007	100	72.222	ENSHBUG00000013363	dhx38	99	58.861	Haplochromis_burtoni
FBgn0026713	l(1)G0007	100	73.198	ENSHGLG00000013308	DHX38	85	66.286	Heterocephalus_glaber_female
FBgn0026713	l(1)G0007	100	71.534	ENSHGLG00100015625	DHX38	85	65.429	Heterocephalus_glaber_male
FBgn0026713	l(1)G0007	100	72.356	ENSHCOG00000003102	dhx38	99	58.861	Hippocampus_comes
FBgn0026713	l(1)G0007	100	71.852	ENSIPUG00000006233	DHX38	90	65.736	Ictalurus_punctatus
FBgn0026713	l(1)G0007	100	73.198	ENSSTOG00000000534	DHX38	85	66.190	Ictidomys_tridecemlineatus
FBgn0026713	l(1)G0007	100	73.198	ENSJJAG00000015149	Dhx38	99	72.833	Jaculus_jaculus
FBgn0026713	l(1)G0007	100	72.407	ENSKMAG00000006694	dhx38	99	59.825	Kryptolebias_marmoratus
FBgn0026713	l(1)G0007	100	72.407	ENSLBEG00000026364	dhx38	82	67.419	Labrus_bergylta
FBgn0026713	l(1)G0007	99	67.603	ENSLACG00000013007	DHX38	99	56.275	Latimeria_chalumnae
FBgn0026713	l(1)G0007	100	72.089	ENSLOCG00000004169	dhx38	82	67.154	Lepisosteus_oculatus
FBgn0026713	l(1)G0007	100	73.198	ENSLAFG00000016360	DHX38	100	59.069	Loxodonta_africana
FBgn0026713	l(1)G0007	100	73.198	ENSMFAG00000031852	DHX38	85	66.347	Macaca_fascicularis
FBgn0026713	l(1)G0007	100	73.198	ENSMMUG00000000677	DHX38	85	66.443	Macaca_mulatta
FBgn0026713	l(1)G0007	100	73.198	ENSMNEG00000045083	DHX38	85	66.347	Macaca_nemestrina
FBgn0026713	l(1)G0007	100	73.198	ENSMLEG00000029417	DHX38	85	66.347	Mandrillus_leucophaeus
FBgn0026713	l(1)G0007	100	72.222	ENSMAMG00000021512	dhx38	99	59.921	Mastacembelus_armatus
FBgn0026713	l(1)G0007	100	67.407	ENSMZEG00005014283	dhx38	99	57.166	Maylandia_zebra
FBgn0026713	l(1)G0007	100	72.458	ENSMGAG00000008791	DHX38	99	62.183	Meleagris_gallopavo
FBgn0026713	l(1)G0007	100	73.198	ENSMAUG00000006330	Dhx38	99	67.155	Mesocricetus_auratus
FBgn0026713	l(1)G0007	100	73.013	ENSMICG00000011402	DHX38	85	66.095	Microcebus_murinus
FBgn0026713	l(1)G0007	100	73.198	ENSMOCG00000016798	Dhx38	80	68.834	Microtus_ochrogaster
FBgn0026713	l(1)G0007	100	72.089	ENSMMOG00000016558	dhx38	83	66.732	Mola_mola
FBgn0026713	l(1)G0007	100	72.828	ENSMODG00000002549	DHX38	85	65.747	Monodelphis_domestica
FBgn0026713	l(1)G0007	100	72.037	ENSMALG00000021005	dhx38	99	57.920	Monopterus_albus
FBgn0026713	l(1)G0007	100	73.198	MGP_CAROLIEiJ_G0031541	Dhx38	85	66.000	Mus_caroli
FBgn0026713	l(1)G0007	100	73.198	ENSMUSG00000037993	Dhx38	85	65.905	Mus_musculus
FBgn0026713	l(1)G0007	100	73.198	MGP_PahariEiJ_G0023141	Dhx38	85	66.000	Mus_pahari
FBgn0026713	l(1)G0007	100	73.198	MGP_SPRETEiJ_G0032659	Dhx38	85	66.000	Mus_spretus
FBgn0026713	l(1)G0007	100	73.198	ENSMPUG00000007766	DHX38	85	66.254	Mustela_putorius_furo
FBgn0026713	l(1)G0007	100	73.383	ENSMLUG00000013866	DHX38	85	66.349	Myotis_lucifugus
FBgn0026713	l(1)G0007	100	73.198	ENSNGAG00000014084	Dhx38	99	59.556	Nannospalax_galili
FBgn0026713	l(1)G0007	100	67.706	ENSNBRG00000010899	dhx38	83	63.724	Neolamprologus_brichardi
FBgn0026713	l(1)G0007	100	73.198	ENSNLEG00000005630	DHX38	85	66.347	Nomascus_leucogenys
FBgn0026713	l(1)G0007	87	71.548	ENSMEUG00000007747	-	72	71.548	Notamacropus_eugenii
FBgn0026713	l(1)G0007	100	70.795	ENSOPRG00000012142	-	83	64.828	Ochotona_princeps
FBgn0026713	l(1)G0007	99	73.234	ENSOPRG00000001884	DHX38	85	64.756	Ochotona_princeps
FBgn0026713	l(1)G0007	100	73.013	ENSODEG00000015472	DHX38	99	59.429	Octodon_degus
FBgn0026713	l(1)G0007	100	71.852	ENSONIG00000005916	dhx38	99	58.800	Oreochromis_niloticus
FBgn0026713	l(1)G0007	100	72.458	ENSOCUG00000009067	DHX38	100	59.051	Oryctolagus_cuniculus
FBgn0026713	l(1)G0007	100	72.963	ENSORLG00000007853	dhx38	81	67.025	Oryzias_latipes
FBgn0026713	l(1)G0007	100	72.963	ENSORLG00020009844	dhx38	81	67.025	Oryzias_latipes_hni
FBgn0026713	l(1)G0007	100	72.963	ENSORLG00015007999	dhx38	81	67.025	Oryzias_latipes_hsok
FBgn0026713	l(1)G0007	100	73.013	ENSOMEG00000001782	dhx38	99	59.586	Oryzias_melastigma
FBgn0026713	l(1)G0007	100	73.013	ENSOGAG00000008658	DHX38	82	67.155	Otolemur_garnettii
FBgn0026713	l(1)G0007	100	73.013	ENSOARG00000003723	DHX38	84	63.828	Ovis_aries
FBgn0026713	l(1)G0007	100	73.198	ENSPPAG00000042488	DHX38	85	66.347	Pan_paniscus
FBgn0026713	l(1)G0007	100	73.198	ENSPPRG00000008930	DHX38	85	66.254	Panthera_pardus
FBgn0026713	l(1)G0007	100	73.198	ENSPTIG00000017274	DHX38	85	66.254	Panthera_tigris_altaica
FBgn0026713	l(1)G0007	100	73.198	ENSPTRG00000008338	DHX38	85	66.347	Pan_troglodytes
FBgn0026713	l(1)G0007	100	73.198	ENSPANG00000022057	DHX38	85	66.347	Papio_anubis
FBgn0026713	l(1)G0007	100	71.667	ENSPKIG00000009708	dhx38	99	59.442	Paramormyrops_kingsleyae
FBgn0026713	l(1)G0007	100	72.222	ENSPMGG00000006063	dhx38	83	65.358	Periophthalmus_magnuspinnatus
FBgn0026713	l(1)G0007	100	73.198	ENSPEMG00000008011	Dhx38	85	66.190	Peromyscus_maniculatus_bairdii
FBgn0026713	l(1)G0007	100	72.643	ENSPCIG00000001712	DHX38	85	65.747	Phascolarctos_cinereus
FBgn0026713	l(1)G0007	100	71.507	ENSPFOG00000001246	dhx38	81	66.472	Poecilia_formosa
FBgn0026713	l(1)G0007	100	72.037	ENSPLAG00000004022	dhx38	81	67.059	Poecilia_latipinna
FBgn0026713	l(1)G0007	100	72.407	ENSPMEG00000015475	dhx38	81	67.255	Poecilia_mexicana
FBgn0026713	l(1)G0007	100	72.407	ENSPREG00000023207	dhx38	83	67.255	Poecilia_reticulata
FBgn0026713	l(1)G0007	100	72.509	ENSPPYG00000007515	DHX38	84	66.027	Pongo_abelii
FBgn0026713	l(1)G0007	86	75.462	ENSPCAG00000010592	DHX38	92	69.964	Procavia_capensis
FBgn0026713	l(1)G0007	100	73.198	ENSPCOG00000027770	DHX38	99	59.350	Propithecus_coquereli
FBgn0026713	l(1)G0007	100	73.198	ENSPVAG00000010259	DHX38	97	62.675	Pteropus_vampyrus
FBgn0026713	l(1)G0007	100	71.852	ENSPNYG00000013335	dhx38	83	66.279	Pundamilia_nyererei
FBgn0026713	l(1)G0007	100	71.904	ENSPNAG00000004859	dhx38	99	59.444	Pygocentrus_nattereri
FBgn0026713	l(1)G0007	100	73.198	ENSRNOG00000014619	Dhx38	99	60.222	Rattus_norvegicus
FBgn0026713	l(1)G0007	100	73.198	ENSRBIG00000025475	DHX38	89	66.347	Rhinopithecus_bieti
FBgn0026713	l(1)G0007	100	73.198	ENSRROG00000028630	DHX38	85	66.347	Rhinopithecus_roxellana
FBgn0026713	l(1)G0007	87	56.576	YKR086W	PRP16	71	52.124	Saccharomyces_cerevisiae
FBgn0026713	l(1)G0007	100	73.198	ENSSBOG00000021842	DHX38	85	66.443	Saimiri_boliviensis_boliviensis
FBgn0026713	l(1)G0007	100	60.440	ENSSHAG00000016871	DHX38	82	60.253	Sarcophilus_harrisii
FBgn0026713	l(1)G0007	100	71.009	ENSSFOG00015014930	dhx38	81	66.018	Scleropages_formosus
FBgn0026713	l(1)G0007	100	72.407	ENSSMAG00000000095	dhx38	81	67.255	Scophthalmus_maximus
FBgn0026713	l(1)G0007	100	72.407	ENSSDUG00000001413	dhx38	99	60.016	Seriola_dumerili
FBgn0026713	l(1)G0007	100	66.481	ENSSLDG00000021050	dhx38	99	57.542	Seriola_lalandi_dorsalis
FBgn0026713	l(1)G0007	100	72.222	ENSSPAG00000020537	dhx38	82	67.094	Stegastes_partitus
FBgn0026713	l(1)G0007	99	77.419	ENSSSCG00000002748	DHX38	78	73.373	Sus_scrofa
FBgn0026713	l(1)G0007	100	68.819	ENSTGUG00000008196	DHX38	84	64.162	Taeniopygia_guttata
FBgn0026713	l(1)G0007	100	72.274	ENSTRUG00000017588	dhx38	82	66.113	Takifugu_rubripes
FBgn0026713	l(1)G0007	100	72.560	ENSTNIG00000009345	dhx38	84	66.374	Tetraodon_nigroviridis
FBgn0026713	l(1)G0007	100	60.998	ENSTBEG00000001426	DHX38	99	52.098	Tupaia_belangeri
FBgn0026713	l(1)G0007	100	71.852	ENSTTRG00000001914	DHX38	99	58.711	Tursiops_truncatus
FBgn0026713	l(1)G0007	100	73.198	ENSUAMG00000020435	DHX38	99	59.382	Ursus_americanus
FBgn0026713	l(1)G0007	100	73.198	ENSUMAG00000018189	DHX38	85	67.155	Ursus_maritimus
FBgn0026713	l(1)G0007	100	73.198	ENSVVUG00000017474	DHX38	99	59.318	Vulpes_vulpes
FBgn0026713	l(1)G0007	94	74.951	ENSXETG00000023447	dhx38	99	59.722	Xenopus_tropicalis
FBgn0026713	l(1)G0007	100	72.222	ENSXCOG00000011321	dhx38	99	59.289	Xiphophorus_couchianus
FBgn0026713	l(1)G0007	100	72.222	ENSXMAG00000003292	dhx38	81	66.961	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function