EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0027079 (Gene tree)
Gene ID: 45783
Gene Symbol: ValRS
Alias: -
Full Name: Valyl-tRNA synthetase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 3860 bases
Position: chr2R:13198850-13202709
Accession: FBgn0027079
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0086847	tRNA-synt_1g	PF09334.11	3.7e-14	1	1
FBpp0086848	tRNA-synt_1g	PF09334.11	3.7e-14	1	1
FBpp0305353	tRNA-synt_1g	PF09334.11	3.9e-14	1	1
FBpp0086847	Anticodon_1	PF08264.13	6.4e-40	1	1
FBpp0086848	Anticodon_1	PF08264.13	6.4e-40	1	1
FBpp0305353	Anticodon_1	PF08264.13	6.5e-40	1	1
FBpp0086847	tRNA-synt_1	PF00133.22	2.2e-199	1	1
FBpp0086848	tRNA-synt_1	PF00133.22	2.2e-199	1	1
FBpp0305353	tRNA-synt_1	PF00133.22	3.4e-198	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0087734	-	3360	-	FBpp0086847	1049 (aa)	-	Q0E993
FBtr0333148	-	3391	-	FBpp0305353	1055 (aa)	-	A0A0B4KF06
FBtr0087735	-	3324	-	FBpp0086848	1049 (aa)	-	Q0E993

Gene Model

Click here to download FBgn0027079's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0027079's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0027079	ValRS	83	40.382	FBgn0035942	ValRS-m	96	38.501

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0027079	ValRS	95	54.626	WBGene00006936	glp-4	99	54.563	Caenorhabditis_elegans
FBgn0027079	ValRS	71	58.488	ENSCING00000009087	-	99	58.488	Ciona_intestinalis
FBgn0027079	ValRS	76	44.747	ENSCING00000008182	-	97	44.747	Ciona_intestinalis
FBgn0027079	ValRS	82	39.978	ENSCSAVG00000000521	-	99	43.727	Ciona_savignyi
FBgn0027079	ValRS	94	51.503	YGR094W	-	93	50.958	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004832	valine-tRNA ligase activity	26761199.	TAS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	26761199.	TAS	Component
GO:0006438	valyl-tRNA aminoacylation	26761199.	TAS	Process