EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0027084 (Gene tree)
Gene ID: 31904
Gene Symbol: LysRS
Alias: -
Full Name: Lysyl-tRNA synthetase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2522 bases
Position: chrX:9606363-9608884
Accession: FBgn0027084
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071301	tRNA_anti-codon	PF01336.25	1.2e-12	1	1
FBpp0071302	tRNA_anti-codon	PF01336.25	1.4e-12	1	1
FBpp0292593	tRNA_anti-codon	PF01336.25	1.4e-12	1	1
FBpp0071301	tRNA-synt_2	PF00152.20	8.5e-81	1	1
FBpp0071302	tRNA-synt_2	PF00152.20	1e-80	1	1
FBpp0292593	tRNA-synt_2	PF00152.20	1e-80	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071366	-	1969	-	FBpp0071301	574 (aa)	-	Q8SXM8
FBtr0071367	-	2223	-	FBpp0071302	607 (aa)	-	Q9W327
FBtr0303560	-	2160	-	FBpp0292593	607 (aa)	-	G7H7Z0

Gene Model

Click here to download FBgn0027084's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0027084's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0027084	LysRS	98	69.352	ENSG00000065427	KARS	100	75.490	Homo_sapiens
FBgn0027084	LysRS	99	72.261	ENSAPOG00000010997	kars	98	72.261	Acanthochromis_polyacanthus
FBgn0027084	LysRS	97	69.014	ENSAMEG00000005347	KARS	98	64.610	Ailuropoda_melanoleuca
FBgn0027084	LysRS	99	67.014	ENSACIG00000000304	kars	99	67.014	Amphilophus_citrinellus
FBgn0027084	LysRS	99	69.565	ENSAOCG00000012971	kars	96	71.091	Amphiprion_ocellaris
FBgn0027084	LysRS	99	70.681	ENSAPEG00000011144	kars	98	71.404	Amphiprion_percula
FBgn0027084	LysRS	99	69.913	ENSATEG00000004954	kars	99	69.913	Anabas_testudineus
FBgn0027084	LysRS	94	67.642	ENSAPLG00000012705	KARS	91	69.841	Anas_platyrhynchos
FBgn0027084	LysRS	98	67.135	ENSACAG00000007577	KARS	96	63.355	Anolis_carolinensis
FBgn0027084	LysRS	98	69.459	ENSANAG00000030403	-	95	69.002	Aotus_nancymaae
FBgn0027084	LysRS	99	57.931	ENSANAG00000031739	-	92	58.160	Aotus_nancymaae
FBgn0027084	LysRS	99	71.127	ENSACLG00000001613	kars	97	70.280	Astatotilapia_calliptera
FBgn0027084	LysRS	97	71.685	ENSAMXG00000030719	kars	96	71.505	Astyanax_mexicanus
FBgn0027084	LysRS	98	69.665	ENSBTAG00000015677	KARS	77	66.778	Bos_taurus
FBgn0027084	LysRS	99	60.279	WBGene00002238	kars-1	98	63.583	Caenorhabditis_elegans
FBgn0027084	LysRS	98	69.352	ENSCJAG00000014213	KARS	97	68.439	Callithrix_jacchus
FBgn0027084	LysRS	97	69.258	ENSCAFG00000020069	KARS	98	64.821	Canis_familiaris
FBgn0027084	LysRS	98	69.284	ENSCAFG00020001721	KARS	96	68.935	Canis_lupus_dingo
FBgn0027084	LysRS	97	68.739	ENSCHIG00000016073	-	87	71.319	Capra_hircus
FBgn0027084	LysRS	98	69.947	ENSCHIG00000014108	-	95	69.596	Capra_hircus
FBgn0027084	LysRS	98	71.002	ENSTSYG00000001643	KARS	95	70.246	Carlito_syrichta
FBgn0027084	LysRS	98	64.789	ENSCAPG00000016234	KARS	98	60.877	Cavia_aperea
FBgn0027084	LysRS	98	69.808	ENSCPOG00000012036	KARS	96	69.284	Cavia_porcellus
FBgn0027084	LysRS	98	69.352	ENSCCAG00000034307	-	95	69.002	Cebus_capucinus
FBgn0027084	LysRS	93	55.823	ENSCCAG00000030337	-	98	55.576	Cebus_capucinus
FBgn0027084	LysRS	98	69.527	ENSCATG00000038129	KARS	98	65.528	Cercocebus_atys
FBgn0027084	LysRS	99	68.601	ENSCLAG00000007905	KARS	98	68.089	Chinchilla_lanigera
FBgn0027084	LysRS	97	69.014	ENSCSAG00000003664	KARS	98	65.366	Chlorocebus_sabaeus
FBgn0027084	LysRS	79	74.505	ENSCHOG00000013447	KARS	73	74.505	Choloepus_hoffmanni
FBgn0027084	LysRS	99	69.483	ENSCPBG00000026969	KARS	97	69.444	Chrysemys_picta_bellii
FBgn0027084	LysRS	93	66.419	ENSCPBG00000002553	-	93	68.786	Chrysemys_picta_bellii
FBgn0027084	LysRS	99	66.842	ENSCING00000009513	-	98	66.901	Ciona_intestinalis
FBgn0027084	LysRS	55	70.755	ENSCSAVG00000001136	-	100	70.881	Ciona_savignyi
FBgn0027084	LysRS	97	69.355	ENSCSAVG00000007684	-	96	69.550	Ciona_savignyi
FBgn0027084	LysRS	99	65.858	ENSCANG00000032813	KARS	96	65.511	Colobus_angolensis_palliatus
FBgn0027084	LysRS	98	69.031	ENSCGRG00001004055	KARS	95	69.231	Cricetulus_griseus_chok1gshd
FBgn0027084	LysRS	98	69.031	ENSCGRG00000014242	KARS	95	69.231	Cricetulus_griseus_crigri
FBgn0027084	LysRS	99	70.191	ENSCSEG00000008324	kars	98	70.578	Cynoglossus_semilaevis
FBgn0027084	LysRS	99	70.157	ENSCVAG00000019686	kars	99	70.157	Cyprinodon_variegatus
FBgn0027084	LysRS	99	68.718	ENSDARG00000103799	kars	99	72.921	Danio_rerio
FBgn0027084	LysRS	97	68.662	ENSDNOG00000002241	KARS	83	71.511	Dasypus_novemcinctus
FBgn0027084	LysRS	95	54.562	ENSDORG00000024214	-	85	57.229	Dipodomys_ordii
FBgn0027084	LysRS	98	70.123	ENSDORG00000004780	-	95	69.420	Dipodomys_ordii
FBgn0027084	LysRS	97	69.558	ENSETEG00000008353	KARS	98	64.984	Echinops_telfairi
FBgn0027084	LysRS	99	66.263	ENSEBUG00000001284	-	98	65.104	Eptatretus_burgeri
FBgn0027084	LysRS	97	70.410	ENSEASG00005013497	KARS	94	70.232	Equus_asinus_asinus
FBgn0027084	LysRS	97	70.410	ENSECAG00000013424	KARS	94	70.232	Equus_caballus
FBgn0027084	LysRS	96	63.506	ENSEEUG00000007042	KARS	84	65.399	Erinaceus_europaeus
FBgn0027084	LysRS	98	64.311	ENSELUG00000014575	kars	96	64.311	Esox_lucius
FBgn0027084	LysRS	98	69.772	ENSFCAG00000008573	KARS	97	68.611	Felis_catus
FBgn0027084	LysRS	98	69.164	ENSFALG00000002543	KARS	98	68.621	Ficedula_albicollis
FBgn0027084	LysRS	98	70.403	ENSFDAG00000007155	KARS	95	70.053	Fukomys_damarensis
FBgn0027084	LysRS	98	70.775	ENSFHEG00000006172	kars	98	70.599	Fundulus_heteroclitus
FBgn0027084	LysRS	98	68.412	ENSGMOG00000002633	kars	87	70.896	Gadus_morhua
FBgn0027084	LysRS	98	69.596	ENSGALG00000000907	KARS	96	69.190	Gallus_gallus
FBgn0027084	LysRS	98	70.723	ENSGAFG00000017252	kars	98	71.252	Gambusia_affinis
FBgn0027084	LysRS	97	70.848	ENSGACG00000015749	kars	96	69.913	Gasterosteus_aculeatus
FBgn0027084	LysRS	93	66.605	ENSGAGG00000011960	-	95	69.368	Gopherus_agassizii
FBgn0027084	LysRS	99	69.983	ENSGAGG00000023836	KARS	96	69.580	Gopherus_agassizii
FBgn0027084	LysRS	99	68.870	ENSGGOG00000005515	KARS	96	68.522	Gorilla_gorilla
FBgn0027084	LysRS	99	71.127	ENSHBUG00000013619	kars	97	70.280	Haplochromis_burtoni
FBgn0027084	LysRS	98	69.772	ENSHGLG00000011898	KARS	95	69.244	Heterocephalus_glaber_female
FBgn0027084	LysRS	98	61.863	ENSHGLG00000015235	-	87	64.054	Heterocephalus_glaber_female
FBgn0027084	LysRS	98	56.261	ENSHGLG00000001298	-	87	57.249	Heterocephalus_glaber_female
FBgn0027084	LysRS	98	69.772	ENSHGLG00100012264	KARS	95	69.244	Heterocephalus_glaber_male
FBgn0027084	LysRS	98	56.089	ENSHGLG00100006466	-	87	57.063	Heterocephalus_glaber_male
FBgn0027084	LysRS	98	61.687	ENSHGLG00100012523	-	91	67.284	Heterocephalus_glaber_male
FBgn0027084	LysRS	99	70.261	ENSHCOG00000002900	kars	96	69.739	Hippocampus_comes
FBgn0027084	LysRS	99	70.906	ENSIPUG00000009862	kars	99	70.906	Ictalurus_punctatus
FBgn0027084	LysRS	98	69.177	ENSSTOG00000004205	KARS	95	68.651	Ictidomys_tridecemlineatus
FBgn0027084	LysRS	98	69.231	ENSJJAG00000020406	Kars	97	69.580	Jaculus_jaculus
FBgn0027084	LysRS	99	69.913	ENSKMAG00000006434	kars	99	69.913	Kryptolebias_marmoratus
FBgn0027084	LysRS	99	70.191	ENSLBEG00000026537	kars	99	67.110	Labrus_bergylta
FBgn0027084	LysRS	98	69.808	ENSLACG00000006667	KARS	91	70.370	Latimeria_chalumnae
FBgn0027084	LysRS	90	70.097	ENSLACG00000016399	-	100	70.097	Latimeria_chalumnae
FBgn0027084	LysRS	91	66.221	ENSLOCG00000013608	-	95	66.348	Lepisosteus_oculatus
FBgn0027084	LysRS	98	71.631	ENSLOCG00000004002	kars	97	71.631	Lepisosteus_oculatus
FBgn0027084	LysRS	96	68.929	ENSLAFG00000015340	KARS	97	64.580	Loxodonta_africana
FBgn0027084	LysRS	98	69.352	ENSMFAG00000040024	KARS	95	69.002	Macaca_fascicularis
FBgn0027084	LysRS	98	69.352	ENSMNEG00000042879	-	95	69.002	Macaca_nemestrina
FBgn0027084	LysRS	85	67.273	ENSMNEG00000035832	-	95	66.869	Macaca_nemestrina
FBgn0027084	LysRS	98	69.527	ENSMLEG00000034947	KARS	95	69.177	Mandrillus_leucophaeus
FBgn0027084	LysRS	98	69.665	ENSMAMG00000021559	kars	98	66.116	Mastacembelus_armatus
FBgn0027084	LysRS	99	71.127	ENSMZEG00005014382	kars	97	70.280	Maylandia_zebra
FBgn0027084	LysRS	95	68.515	ENSMGAG00000009000	KARS	98	68.535	Meleagris_gallopavo
FBgn0027084	LysRS	98	70.175	ENSMICG00000011997	KARS	97	69.072	Microcebus_murinus
FBgn0027084	LysRS	98	67.544	ENSMOCG00000019029	-	95	67.077	Microtus_ochrogaster
FBgn0027084	LysRS	98	70.105	ENSMOCG00000011829	Kars	96	69.649	Microtus_ochrogaster
FBgn0027084	LysRS	98	69.627	ENSMMOG00000016934	kars	94	71.321	Mola_mola
FBgn0027084	LysRS	98	65.893	ENSMODG00000002238	-	86	69.025	Monodelphis_domestica
FBgn0027084	LysRS	97	66.961	ENSMODG00000002215	-	91	69.790	Monodelphis_domestica
FBgn0027084	LysRS	99	68.870	ENSMALG00000020858	kars	99	68.696	Monopterus_albus
FBgn0027084	LysRS	85	70.479	MGP_CAROLIEiJ_G0031588	Kars	98	70.479	Mus_caroli
FBgn0027084	LysRS	98	70.139	ENSMUSG00000031948	Kars	95	70.351	Mus_musculus
FBgn0027084	LysRS	98	70.455	MGP_PahariEiJ_G0023186	Kars	95	70.351	Mus_pahari
FBgn0027084	LysRS	98	70.139	MGP_SPRETEiJ_G0032706	Kars	95	70.351	Mus_spretus
FBgn0027084	LysRS	97	69.718	ENSMPUG00000009871	KARS	98	65.422	Mustela_putorius_furo
FBgn0027084	LysRS	64	48.794	ENSMLUG00000026871	-	75	48.794	Myotis_lucifugus
FBgn0027084	LysRS	97	68.959	ENSMLUG00000015119	-	95	68.959	Myotis_lucifugus
FBgn0027084	LysRS	94	68.478	ENSNGAG00000022944	-	94	67.818	Nannospalax_galili
FBgn0027084	LysRS	98	69.686	ENSNGAG00000018820	-	96	69.056	Nannospalax_galili
FBgn0027084	LysRS	99	71.127	ENSNBRG00000011098	kars	97	70.280	Neolamprologus_brichardi
FBgn0027084	LysRS	98	69.177	ENSNLEG00000013072	KARS	95	68.827	Nomascus_leucogenys
FBgn0027084	LysRS	98	67.138	ENSMEUG00000008684	KARS	86	69.790	Notamacropus_eugenii
FBgn0027084	LysRS	97	69.136	ENSOPRG00000012544	KARS	85	71.893	Ochotona_princeps
FBgn0027084	LysRS	97	49.104	ENSODEG00000009464	-	97	49.104	Octodon_degus
FBgn0027084	LysRS	99	69.204	ENSODEG00000013099	-	97	68.858	Octodon_degus
FBgn0027084	LysRS	99	71.303	ENSONIG00000005937	kars	98	71.303	Oreochromis_niloticus
FBgn0027084	LysRS	97	69.284	ENSOANG00000008179	KARS	89	72.159	Ornithorhynchus_anatinus
FBgn0027084	LysRS	98	64.098	ENSOCUG00000015553	KARS	95	64.098	Oryctolagus_cuniculus
FBgn0027084	LysRS	97	69.821	ENSORLG00000007627	kars	96	66.779	Oryzias_latipes
FBgn0027084	LysRS	97	69.464	ENSORLG00020010056	kars	96	66.610	Oryzias_latipes_hni
FBgn0027084	LysRS	97	69.643	ENSORLG00015008179	kars	96	66.779	Oryzias_latipes_hsok
FBgn0027084	LysRS	99	68.870	ENSOMEG00000001710	kars	99	68.870	Oryzias_melastigma
FBgn0027084	LysRS	97	65.202	ENSOGAG00000005903	KARS	74	75.000	Otolemur_garnettii
FBgn0027084	LysRS	91	69.260	ENSOARG00000006928	KARS	92	68.880	Ovis_aries
FBgn0027084	LysRS	98	69.177	ENSPPAG00000036192	KARS	95	68.827	Pan_paniscus
FBgn0027084	LysRS	98	69.596	ENSPPRG00000003027	KARS	95	69.527	Panthera_pardus
FBgn0027084	LysRS	98	69.772	ENSPTIG00000008011	KARS	95	69.702	Panthera_tigris_altaica
FBgn0027084	LysRS	98	69.177	ENSPTRG00000008364	KARS	95	68.827	Pan_troglodytes
FBgn0027084	LysRS	98	69.527	ENSPANG00000024106	KARS	98	65.528	Papio_anubis
FBgn0027084	LysRS	99	69.474	ENSPKIG00000009896	kars	98	70.351	Paramormyrops_kingsleyae
FBgn0027084	LysRS	89	69.863	ENSPSIG00000003041	-	93	69.863	Pelodiscus_sinensis
FBgn0027084	LysRS	96	68.885	ENSPSIG00000009294	KARS	90	71.128	Pelodiscus_sinensis
FBgn0027084	LysRS	91	72.762	ENSPMGG00000006117	kars	93	72.762	Periophthalmus_magnuspinnatus
FBgn0027084	LysRS	98	69.459	ENSPEMG00000012277	Kars	95	68.827	Peromyscus_maniculatus_bairdii
FBgn0027084	LysRS	98	67.190	ENSPMAG00000008360	-	86	68.889	Petromyzon_marinus
FBgn0027084	LysRS	97	70.463	ENSPCIG00000010761	-	94	70.232	Phascolarctos_cinereus
FBgn0027084	LysRS	97	68.885	ENSPCIG00000025469	-	84	71.098	Phascolarctos_cinereus
FBgn0027084	LysRS	98	71.201	ENSPFOG00000013253	kars	98	67.881	Poecilia_formosa
FBgn0027084	LysRS	99	70.732	ENSPLAG00000004189	kars	99	70.732	Poecilia_latipinna
FBgn0027084	LysRS	99	70.906	ENSPMEG00000015698	kars	99	70.906	Poecilia_mexicana
FBgn0027084	LysRS	98	70.723	ENSPREG00000023179	kars	98	71.076	Poecilia_reticulata
FBgn0027084	LysRS	97	68.838	ENSPPYG00000007567	KARS	98	65.203	Pongo_abelii
FBgn0027084	LysRS	89	66.082	ENSPCAG00000010790	KARS	98	66.082	Procavia_capensis
FBgn0027084	LysRS	98	65.658	ENSPCOG00000003166	KARS	84	75.604	Propithecus_coquereli
FBgn0027084	LysRS	98	69.110	ENSPVAG00000006746	KARS	99	65.267	Pteropus_vampyrus
FBgn0027084	LysRS	99	71.127	ENSPNYG00000013095	kars	97	70.280	Pundamilia_nyererei
FBgn0027084	LysRS	97	71.099	ENSPNAG00000013828	kars	97	70.745	Pygocentrus_nattereri
FBgn0027084	LysRS	97	68.541	ENSRNOG00000019456	Kars	83	72.084	Rattus_norvegicus
FBgn0027084	LysRS	98	69.352	ENSRBIG00000030118	KARS	98	65.366	Rhinopithecus_bieti
FBgn0027084	LysRS	98	68.870	ENSRROG00000041418	KARS	98	65.366	Rhinopithecus_roxellana
FBgn0027084	LysRS	97	60.638	YDR037W	KRS1	94	60.638	Saccharomyces_cerevisiae
FBgn0027084	LysRS	80	35.091	YNL073W	-	83	35.091	Saccharomyces_cerevisiae
FBgn0027084	LysRS	98	69.002	ENSSBOG00000019255	KARS	95	68.651	Saimiri_boliviensis_boliviensis
FBgn0027084	LysRS	97	65.432	ENSSHAG00000001359	-	91	67.557	Sarcophilus_harrisii
FBgn0027084	LysRS	94	60.708	ENSSHAG00000009005	-	92	62.646	Sarcophilus_harrisii
FBgn0027084	LysRS	98	57.592	ENSSHAG00000002050	-	85	59.626	Sarcophilus_harrisii
FBgn0027084	LysRS	96	70.524	ENSSFOG00015014837	kars	93	73.218	Scleropages_formosus
FBgn0027084	LysRS	99	69.363	ENSSMAG00000021441	kars	99	70.087	Scophthalmus_maximus
FBgn0027084	LysRS	99	69.483	ENSSDUG00000001202	kars	99	70.191	Seriola_dumerili
FBgn0027084	LysRS	98	69.596	ENSSLDG00000021220	kars	92	71.828	Seriola_lalandi_dorsalis
FBgn0027084	LysRS	76	79.630	ENSSARG00000011493	KARS	69	79.630	Sorex_araneus
FBgn0027084	LysRS	66	64.211	ENSSPUG00000000449	-	84	66.116	Sphenodon_punctatus
FBgn0027084	LysRS	99	68.771	ENSSPUG00000004974	KARS	97	68.942	Sphenodon_punctatus
FBgn0027084	LysRS	98	70.526	ENSSPAG00000020365	kars	92	72.761	Stegastes_partitus
FBgn0027084	LysRS	99	69.896	ENSSSCG00000002704	KARS	96	69.896	Sus_scrofa
FBgn0027084	LysRS	97	70.053	ENSTGUG00000008400	KARS	93	72.500	Taeniopygia_guttata
FBgn0027084	LysRS	97	70.504	ENSTRUG00000017551	kars	92	70.324	Takifugu_rubripes
FBgn0027084	LysRS	97	71.377	ENSTNIG00000009351	kars	96	71.377	Tetraodon_nigroviridis
FBgn0027084	LysRS	79	62.418	ENSTBEG00000004610	KARS	79	62.418	Tupaia_belangeri
FBgn0027084	LysRS	97	68.641	ENSTTRG00000001221	KARS	98	64.715	Tursiops_truncatus
FBgn0027084	LysRS	98	69.527	ENSUAMG00000017557	KARS	95	69.177	Ursus_americanus
FBgn0027084	LysRS	97	69.190	ENSUMAG00000014559	KARS	98	64.773	Ursus_maritimus
FBgn0027084	LysRS	98	67.014	ENSVPAG00000003716	KARS	99	62.821	Vicugna_pacos
FBgn0027084	LysRS	98	69.459	ENSVVUG00000024338	KARS	97	68.675	Vulpes_vulpes
FBgn0027084	LysRS	99	68.348	ENSXETG00000003569	kars	99	67.358	Xenopus_tropicalis
FBgn0027084	LysRS	96	70.578	ENSXCOG00000011313	kars	94	72.779	Xiphophorus_couchianus
FBgn0027084	LysRS	98	70.370	ENSXMAG00000003191	kars	98	70.899	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0004824	lysine-tRNA ligase activity	21873635.	IBA	Function
GO:0004824	lysine-tRNA ligase activity	26761199.	TAS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	26761199.	TAS	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	26761199.	TAS	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006430	lysyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0006430	lysyl-tRNA aminoacylation	26761199.	TAS	Process
GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	21873635.	IBA	Component
GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	8161568.	IDA	Component