EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0027548 (Gene tree)
Gene ID: 35756
Gene Symbol: nito
Alias: -
Full Name: spenito
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 7343 bases
Position: chr2R:7962463-7969805
Accession: FBgn0027548
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087933	RRM_1	PF00076.22	7.6e-26	1	2
FBpp0087933	RRM_1	PF00076.22	7.6e-26	2	2
FBpp0087934	RRM_1	PF00076.22	7.6e-26	1	2
FBpp0087934	RRM_1	PF00076.22	7.6e-26	2	2
FBpp0308267	RRM_1	PF00076.22	7.6e-26	1	2
FBpp0308267	RRM_1	PF00076.22	7.6e-26	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0339122	-	3084	-	FBpp0308267	793 (aa)	-	Q7KMJ6
FBtr0088858	-	3115	-	FBpp0087934	793 (aa)	-	Q7KMJ6
FBtr0088857	-	4001	-	FBpp0087933	793 (aa)	-	Q7KMJ6

Gene Model

Click here to download FBgn0027548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0027548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0027548	nito	65	39.782	ENSCSAVG00000005270	-	98	36.386	Ciona_savignyi

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	27919077.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	18174108.26324914.28675155.	IDA	Component
GO:0010628	positive regulation of gene expression	25040100.	IGI	Process
GO:0035222	wing disc pattern formation	18174108.	IMP	Process
GO:0036396	RNA N6-methyladenosine methyltransferase complex	27919077.29535189.29555755.	IDA	Component
GO:0048749	compound eye development	18174108.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0080009	mRNA methylation	27919077.	IC	Process
GO:0090263	positive regulation of canonical Wnt signaling pathway	18174108.	IGI	Process
GO:2000737	negative regulation of stem cell differentiation	26324914.	IMP	Process