EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0027617 (Gene tree)
Gene ID: 42957
Gene Symbol: CG5808
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 2105 bases
Position: chr3R:24814903-24817007
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084113	RRM_1	PF00076.22	1.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084738	-	2043	-	FBpp0084113	653 (aa)	-	Q9XYZ6

Gene Model

Click here to download FBgn0027617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0027617's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0027617	CG5808	54	60.452	ENSAMEG00000018278	PPIL4	71	60.452	Ailuropoda_melanoleuca
FBgn0027617	CG5808	73	48.875	ENSAPLG00000008437	PPIL4	91	52.315	Anas_platyrhynchos
FBgn0027617	CG5808	54	61.756	ENSCPBG00000016612	PPIL4	99	50.716	Chrysemys_picta_bellii
FBgn0027617	CG5808	74	47.475	ENSCING00000006773	-	72	59.878	Ciona_intestinalis
FBgn0027617	CG5808	68	49.670	ENSCSAVG00000010619	-	99	47.748	Ciona_savignyi
FBgn0027617	CG5808	54	60.000	ENSCSEG00000015812	ppil4	75	60.000	Cynoglossus_semilaevis
FBgn0027617	CG5808	71	50.216	ENSDARG00000043854	ppil4	97	51.429	Danio_rerio
FBgn0027617	CG5808	76	48.503	ENSELUG00000018746	ppil4	100	50.636	Esox_lucius
FBgn0027617	CG5808	68	48.989	ENSFALG00000013130	PPIL4	99	47.682	Ficedula_albicollis
FBgn0027617	CG5808	53	62.069	ENSGALG00000012364	PPIL4	87	52.222	Gallus_gallus
FBgn0027617	CG5808	54	61.143	ENSGACG00000006639	ppil4	100	49.802	Gasterosteus_aculeatus
FBgn0027617	CG5808	76	49.116	ENSGAGG00000005926	PPIL4	99	50.412	Gopherus_agassizii
FBgn0027617	CG5808	76	49.398	ENSIPUG00000006626	PPIL4	96	51.374	Ictalurus_punctatus
FBgn0027617	CG5808	75	49.487	ENSKMAG00000014367	ppil4	100	51.292	Kryptolebias_marmoratus
FBgn0027617	CG5808	76	50.499	ENSMAMG00000004525	ppil4	100	50.301	Mastacembelus_armatus
FBgn0027617	CG5808	50	61.846	ENSMGAG00000012596	PPIL4	69	61.846	Meleagris_gallopavo
FBgn0027617	CG5808	54	60.286	ENSMMOG00000014859	ppil4	77	60.286	Mola_mola
FBgn0027617	CG5808	54	61.823	ENSMODG00000016825	PPIL4	92	53.043	Monodelphis_domestica
FBgn0027617	CG5808	66	52.535	ENSMALG00000018887	ppil4	99	51.046	Monopterus_albus
FBgn0027617	CG5808	53	60.632	ENSMLUG00000002766	PPIL4	100	46.990	Myotis_lucifugus
FBgn0027617	CG5808	53	60.920	ENSNGAG00000008801	Ppil4	100	47.582	Nannospalax_galili
FBgn0027617	CG5808	53	59.654	ENSOANG00000001063	PPIL4	99	46.947	Ornithorhynchus_anatinus
FBgn0027617	CG5808	54	61.299	ENSOGAG00000014153	-	76	61.299	Otolemur_garnettii
FBgn0027617	CG5808	76	49.400	ENSPKIG00000019748	ppil4	95	60.208	Paramormyrops_kingsleyae
FBgn0027617	CG5808	54	61.429	ENSPMGG00000002277	ppil4	95	52.584	Periophthalmus_magnuspinnatus
FBgn0027617	CG5808	54	61.823	ENSPCIG00000025561	PPIL4	99	51.534	Phascolarctos_cinereus
FBgn0027617	CG5808	68	42.667	ENSPPYG00000017785	-	95	43.187	Pongo_abelii
FBgn0027617	CG5808	63	55.314	ENSPNAG00000002199	ppil4	96	51.805	Pygocentrus_nattereri
FBgn0027617	CG5808	70	50.316	ENSRBIG00000043467	PPIL4	68	62.997	Rhinopithecus_bieti
FBgn0027617	CG5808	54	61.823	ENSSHAG00000017140	PPIL4	97	52.830	Sarcophilus_harrisii
FBgn0027617	CG5808	69	51.059	ENSSMAG00000017653	ppil4	96	59.862	Scophthalmus_maximus
FBgn0027617	CG5808	62	55.048	ENSSDUG00000010647	ppil4	99	53.483	Seriola_dumerili
FBgn0027617	CG5808	54	58.310	ENSSARG00000011244	PPIL4	71	58.310	Sorex_araneus
FBgn0027617	CG5808	51	62.538	ENSSPUG00000005655	PPIL4	74	62.538	Sphenodon_punctatus
FBgn0027617	CG5808	76	51.497	ENSTGUG00000010655	-	100	48.738	Taeniopygia_guttata
FBgn0027617	CG5808	52	60.526	ENSTNIG00000002706	ppil4	99	54.094	Tetraodon_nigroviridis
FBgn0027617	CG5808	73	49.084	ENSVVUG00000005119	PPIL4	86	50.964	Vulpes_vulpes
FBgn0027617	CG5808	76	48.497	ENSXETG00000021385	ppil4	100	48.297	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000413	protein peptidyl-prolyl isomerization	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003755	peptidyl-prolyl cis-trans isomerase activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:1901407	regulation of phosphorylation of RNA polymerase II C-terminal domain	21873635.	IBA	Process