EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0027873 (Gene tree)
Gene ID: 43426
Gene Symbol: Cpsf100
Alias: -
Full Name: Cleavage and polyadenylation specificity factor 100
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 2490 bases
Position: chr3R:29034573-29037062
Accession: FBgn0027873
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084726	Beta-Casp	PF10996.8	2.7e-20	1	1
FBpp0084726	Lactamase_B	PF00753.27	5.1e-07	1	1
FBpp0084726	RMMBL	PF07521.12	3.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0085357	-	2431	-	FBpp0084726	756 (aa)	-	Q9V3D6

Gene Model

Click here to download FBgn0027873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0027873's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0027873	Cpsf100	100	53.683	ENSG00000165934	CPSF2	100	66.250	Homo_sapiens
FBgn0027873	Cpsf100	100	53.903	ENSAPOG00000001242	cpsf2	100	54.512	Acanthochromis_polyacanthus
FBgn0027873	Cpsf100	50	68.602	ENSAMEG00000014835	-	99	68.602	Ailuropoda_melanoleuca
FBgn0027873	Cpsf100	100	53.837	ENSACIG00000009331	cpsf2	100	54.568	Amphilophus_citrinellus
FBgn0027873	Cpsf100	100	53.779	ENSAOCG00000014095	cpsf2	100	54.265	Amphiprion_ocellaris
FBgn0027873	Cpsf100	100	53.779	ENSAPEG00000009158	cpsf2	100	54.265	Amphiprion_percula
FBgn0027873	Cpsf100	96	53.085	ENSATEG00000017644	cpsf2	99	48.220	Anabas_testudineus
FBgn0027873	Cpsf100	100	52.868	ENSAPLG00000006330	CPSF2	100	53.109	Anas_platyrhynchos
FBgn0027873	Cpsf100	100	53.059	ENSACAG00000009245	CPSF2	100	53.300	Anolis_carolinensis
FBgn0027873	Cpsf100	100	53.933	ENSANAG00000022915	CPSF2	100	54.047	Aotus_nancymaae
FBgn0027873	Cpsf100	100	53.408	ENSAMXG00000018696	cpsf2	100	53.523	Astyanax_mexicanus
FBgn0027873	Cpsf100	100	53.683	ENSBTAG00000010227	CPSF2	100	53.923	Bos_taurus
FBgn0027873	Cpsf100	100	40.257	WBGene00017313	cpsf-2	100	40.234	Caenorhabditis_elegans
FBgn0027873	Cpsf100	100	53.933	ENSCJAG00000018069	CPSF2	100	54.047	Callithrix_jacchus
FBgn0027873	Cpsf100	100	53.808	ENSCAFG00000010909	CPSF2	100	54.047	Canis_familiaris
FBgn0027873	Cpsf100	92	64.706	ENSCAFG00020020670	CPSF2	100	64.706	Canis_lupus_dingo
FBgn0027873	Cpsf100	100	53.683	ENSCHIG00000023848	CPSF2	100	53.923	Capra_hircus
FBgn0027873	Cpsf100	100	53.433	ENSTSYG00000009036	CPSF2	100	53.674	Carlito_syrichta
FBgn0027873	Cpsf100	100	53.808	ENSCPOG00000010899	CPSF2	100	54.047	Cavia_porcellus
FBgn0027873	Cpsf100	100	53.933	ENSCCAG00000028088	CPSF2	100	54.047	Cebus_capucinus
FBgn0027873	Cpsf100	100	53.808	ENSCATG00000030132	CPSF2	100	53.923	Cercocebus_atys
FBgn0027873	Cpsf100	100	53.808	ENSCLAG00000012404	CPSF2	100	53.798	Chinchilla_lanigera
FBgn0027873	Cpsf100	100	53.808	ENSCSAG00000011300	CPSF2	100	53.923	Chlorocebus_sabaeus
FBgn0027873	Cpsf100	91	61.905	ENSCHOG00000012904	CPSF2	93	62.268	Choloepus_hoffmanni
FBgn0027873	Cpsf100	100	52.809	ENSCPBG00000008766	CPSF2	97	53.051	Chrysemys_picta_bellii
FBgn0027873	Cpsf100	100	47.685	ENSCING00000007881	-	100	47.625	Ciona_intestinalis
FBgn0027873	Cpsf100	94	53.590	ENSCANG00000041651	CPSF2	100	53.785	Colobus_angolensis_palliatus
FBgn0027873	Cpsf100	100	53.059	ENSCGRG00001006901	Cpsf2	100	53.300	Cricetulus_griseus_chok1gshd
FBgn0027873	Cpsf100	100	53.059	ENSCGRG00000012416	Cpsf2	100	53.300	Cricetulus_griseus_crigri
FBgn0027873	Cpsf100	100	52.599	ENSCSEG00000004116	cpsf2	100	52.658	Cynoglossus_semilaevis
FBgn0027873	Cpsf100	100	53.160	ENSCVAG00000000095	cpsf2	100	53.523	Cyprinodon_variegatus
FBgn0027873	Cpsf100	100	53.894	ENSDARG00000028971	cpsf2	100	53.523	Danio_rerio
FBgn0027873	Cpsf100	100	53.808	ENSDNOG00000042757	CPSF2	100	53.923	Dasypus_novemcinctus
FBgn0027873	Cpsf100	100	53.558	ENSDORG00000013709	Cpsf2	100	53.798	Dipodomys_ordii
FBgn0027873	Cpsf100	91	60.331	ENSETEG00000012123	CPSF2	93	60.700	Echinops_telfairi
FBgn0027873	Cpsf100	55	52.706	ENSEBUG00000012098	cpsf2	93	53.647	Eptatretus_burgeri
FBgn0027873	Cpsf100	83	70.775	ENSEASG00005021193	CPSF2	99	70.775	Equus_asinus_asinus
FBgn0027873	Cpsf100	100	53.683	ENSECAG00000023935	CPSF2	100	53.923	Equus_caballus
FBgn0027873	Cpsf100	100	53.931	ENSELUG00000008442	cpsf2	100	53.686	Esox_lucius
FBgn0027873	Cpsf100	100	53.683	ENSFCAG00000007886	CPSF2	100	53.923	Felis_catus
FBgn0027873	Cpsf100	100	52.625	ENSFALG00000002412	CPSF2	100	52.868	Ficedula_albicollis
FBgn0027873	Cpsf100	100	53.990	ENSFDAG00000006327	CPSF2	100	54.229	Fukomys_damarensis
FBgn0027873	Cpsf100	96	53.189	ENSFHEG00000015465	cpsf2	98	53.435	Fundulus_heteroclitus
FBgn0027873	Cpsf100	100	52.593	ENSGMOG00000008761	cpsf2	100	52.222	Gadus_morhua
FBgn0027873	Cpsf100	100	53.000	ENSGALG00000010783	CPSF2	100	53.367	Gallus_gallus
FBgn0027873	Cpsf100	100	53.779	ENSGAFG00000001407	cpsf2	100	53.894	Gambusia_affinis
FBgn0027873	Cpsf100	100	53.532	ENSGACG00000008418	cpsf2	100	53.646	Gasterosteus_aculeatus
FBgn0027873	Cpsf100	100	52.684	ENSGAGG00000008287	CPSF2	100	52.927	Gopherus_agassizii
FBgn0027873	Cpsf100	100	53.683	ENSGGOG00000011799	CPSF2	100	53.923	Gorilla_gorilla
FBgn0027873	Cpsf100	100	53.160	ENSHBUG00000023466	cpsf2	100	53.646	Haplochromis_burtoni
FBgn0027873	Cpsf100	100	53.990	ENSHGLG00000018311	CPSF2	100	54.229	Heterocephalus_glaber_female
FBgn0027873	Cpsf100	100	53.990	ENSHGLG00100016460	CPSF2	100	54.229	Heterocephalus_glaber_male
FBgn0027873	Cpsf100	100	52.109	ENSHCOG00000019527	cpsf2	98	52.351	Hippocampus_comes
FBgn0027873	Cpsf100	100	53.218	ENSIPUG00000020857	cpsf2	100	53.580	Ictalurus_punctatus
FBgn0027873	Cpsf100	100	53.933	ENSSTOG00000009528	CPSF2	100	54.172	Ictidomys_tridecemlineatus
FBgn0027873	Cpsf100	100	53.933	ENSJJAG00000017925	Cpsf2	100	54.172	Jaculus_jaculus
FBgn0027873	Cpsf100	100	54.275	ENSKMAG00000019429	cpsf2	100	54.151	Kryptolebias_marmoratus
FBgn0027873	Cpsf100	94	51.546	ENSLBEG00000011585	cpsf2	99	52.673	Labrus_bergylta
FBgn0027873	Cpsf100	100	52.750	ENSLACG00000019024	CPSF2	100	52.750	Latimeria_chalumnae
FBgn0027873	Cpsf100	100	54.017	ENSLOCG00000014102	cpsf2	100	54.131	Lepisosteus_oculatus
FBgn0027873	Cpsf100	100	53.798	ENSLAFG00000004891	CPSF2	100	53.913	Loxodonta_africana
FBgn0027873	Cpsf100	100	53.808	ENSMFAG00000041212	CPSF2	100	53.923	Macaca_fascicularis
FBgn0027873	Cpsf100	100	53.808	ENSMMUG00000000699	CPSF2	100	53.923	Macaca_mulatta
FBgn0027873	Cpsf100	100	53.808	ENSMNEG00000031584	CPSF2	100	53.923	Macaca_nemestrina
FBgn0027873	Cpsf100	100	53.808	ENSMLEG00000029394	CPSF2	100	53.923	Mandrillus_leucophaeus
FBgn0027873	Cpsf100	100	53.036	ENSMAMG00000004235	cpsf2	100	53.399	Mastacembelus_armatus
FBgn0027873	Cpsf100	100	53.160	ENSMZEG00005001769	cpsf2	100	53.646	Maylandia_zebra
FBgn0027873	Cpsf100	100	53.059	ENSMGAG00000013122	CPSF2	100	53.425	Meleagris_gallopavo
FBgn0027873	Cpsf100	100	53.059	ENSMAUG00000015160	Cpsf2	100	53.300	Mesocricetus_auratus
FBgn0027873	Cpsf100	100	53.808	ENSMICG00000016441	CPSF2	100	54.047	Microcebus_murinus
FBgn0027873	Cpsf100	100	53.059	ENSMOCG00000015372	Cpsf2	100	53.300	Microtus_ochrogaster
FBgn0027873	Cpsf100	100	51.432	ENSMMOG00000015590	cpsf2	100	51.056	Mola_mola
FBgn0027873	Cpsf100	100	53.933	ENSMODG00000002042	CPSF2	100	54.047	Monodelphis_domestica
FBgn0027873	Cpsf100	100	51.238	ENSMALG00000022275	cpsf2	100	51.728	Monopterus_albus
FBgn0027873	Cpsf100	100	53.059	ENSMUSG00000041781	Cpsf2	100	53.300	Mus_musculus
FBgn0027873	Cpsf100	100	53.059	MGP_PahariEiJ_G0029791	Cpsf2	100	53.300	Mus_pahari
FBgn0027873	Cpsf100	100	53.059	MGP_SPRETEiJ_G0018877	Cpsf2	100	53.300	Mus_spretus
FBgn0027873	Cpsf100	100	53.808	ENSMPUG00000007617	CPSF2	98	54.047	Mustela_putorius_furo
FBgn0027873	Cpsf100	100	53.875	ENSMLUG00000005570	CPSF2	100	53.990	Myotis_lucifugus
FBgn0027873	Cpsf100	100	53.308	ENSNGAG00000020312	Cpsf2	100	53.549	Nannospalax_galili
FBgn0027873	Cpsf100	100	53.284	ENSNBRG00000022402	cpsf2	100	53.770	Neolamprologus_brichardi
FBgn0027873	Cpsf100	100	52.809	ENSNLEG00000017132	CPSF2	100	53.051	Nomascus_leucogenys
FBgn0027873	Cpsf100	86	70.550	ENSMEUG00000008138	CPSF2	91	70.550	Notamacropus_eugenii
FBgn0027873	Cpsf100	90	56.579	ENSOPRG00000008484	-	92	56.579	Ochotona_princeps
FBgn0027873	Cpsf100	100	53.808	ENSODEG00000008682	CPSF2	100	53.923	Octodon_degus
FBgn0027873	Cpsf100	100	53.160	ENSONIG00000005901	cpsf2	100	53.646	Oreochromis_niloticus
FBgn0027873	Cpsf100	100	53.808	ENSOANG00000003822	CPSF2	100	53.923	Ornithorhynchus_anatinus
FBgn0027873	Cpsf100	100	53.558	ENSOCUG00000005713	CPSF2	100	53.798	Oryctolagus_cuniculus
FBgn0027873	Cpsf100	100	49.071	ENSORLG00000011628	cpsf2	100	49.197	Oryzias_latipes
FBgn0027873	Cpsf100	100	53.532	ENSORLG00020016980	cpsf2	100	53.646	Oryzias_latipes_hni
FBgn0027873	Cpsf100	100	53.532	ENSORLG00015011910	cpsf2	100	53.646	Oryzias_latipes_hsok
FBgn0027873	Cpsf100	100	53.342	ENSOMEG00000022876	cpsf2	100	53.094	Oryzias_melastigma
FBgn0027873	Cpsf100	100	51.806	ENSOARG00000012889	CPSF2	100	51.925	Ovis_aries
FBgn0027873	Cpsf100	100	53.683	ENSPPAG00000039666	CPSF2	100	53.923	Pan_paniscus
FBgn0027873	Cpsf100	99	53.625	ENSPPRG00000010869	CPSF2	100	53.865	Panthera_pardus
FBgn0027873	Cpsf100	100	53.683	ENSPTIG00000021202	CPSF2	100	53.923	Panthera_tigris_altaica
FBgn0027873	Cpsf100	100	53.683	ENSPTRG00000006651	CPSF2	100	53.923	Pan_troglodytes
FBgn0027873	Cpsf100	100	53.808	ENSPANG00000017417	CPSF2	100	53.923	Papio_anubis
FBgn0027873	Cpsf100	100	50.062	ENSPKIG00000021453	cpsf2	100	49.691	Paramormyrops_kingsleyae
FBgn0027873	Cpsf100	100	52.434	ENSPSIG00000006289	CPSF2	100	52.677	Pelodiscus_sinensis
FBgn0027873	Cpsf100	75	46.353	ENSPMGG00000002511	cpsf2	99	46.677	Periophthalmus_magnuspinnatus
FBgn0027873	Cpsf100	100	53.059	ENSPEMG00000007917	Cpsf2	100	53.300	Peromyscus_maniculatus_bairdii
FBgn0027873	Cpsf100	100	50.980	ENSPMAG00000006205	cpsf2	100	51.605	Petromyzon_marinus
FBgn0027873	Cpsf100	100	53.933	ENSPCIG00000011393	CPSF2	92	67.980	Phascolarctos_cinereus
FBgn0027873	Cpsf100	100	53.894	ENSPFOG00000018648	cpsf2	100	53.894	Poecilia_formosa
FBgn0027873	Cpsf100	100	53.894	ENSPLAG00000019199	cpsf2	99	53.894	Poecilia_latipinna
FBgn0027873	Cpsf100	96	53.470	ENSPMEG00000012100	cpsf2	99	53.590	Poecilia_mexicana
FBgn0027873	Cpsf100	100	53.532	ENSPREG00000008960	cpsf2	100	53.646	Poecilia_reticulata
FBgn0027873	Cpsf100	62	44.078	ENSPPYG00000029685	-	100	44.487	Pongo_abelii
FBgn0027873	Cpsf100	100	53.625	ENSPCAG00000012477	CPSF2	100	53.865	Procavia_capensis
FBgn0027873	Cpsf100	100	53.808	ENSPCOG00000026387	CPSF2	100	54.047	Propithecus_coquereli
FBgn0027873	Cpsf100	64	70.918	ENSPVAG00000004223	CPSF2	65	70.918	Pteropus_vampyrus
FBgn0027873	Cpsf100	100	53.094	ENSPNYG00000023356	cpsf2	100	53.580	Pundamilia_nyererei
FBgn0027873	Cpsf100	100	53.408	ENSPNAG00000001849	cpsf2	100	53.523	Pygocentrus_nattereri
FBgn0027873	Cpsf100	100	52.934	ENSRNOG00000005733	Cpsf2	100	53.176	Rattus_norvegicus
FBgn0027873	Cpsf100	100	53.808	ENSRBIG00000044792	CPSF2	100	53.923	Rhinopithecus_bieti
FBgn0027873	Cpsf100	100	53.808	ENSRROG00000034875	CPSF2	100	53.923	Rhinopithecus_roxellana
FBgn0027873	Cpsf100	100	53.933	ENSSBOG00000024571	CPSF2	100	54.047	Saimiri_boliviensis_boliviensis
FBgn0027873	Cpsf100	100	53.933	ENSSHAG00000010458	CPSF2	100	54.047	Sarcophilus_harrisii
FBgn0027873	Cpsf100	100	54.094	ENSSFOG00015002117	cpsf2	100	54.332	Scleropages_formosus
FBgn0027873	Cpsf100	100	52.404	ENSSMAG00000002001	cpsf2	100	52.723	Scophthalmus_maximus
FBgn0027873	Cpsf100	100	52.912	ENSSDUG00000004084	cpsf2	100	53.399	Seriola_dumerili
FBgn0027873	Cpsf100	100	52.580	ENSSLDG00000024330	cpsf2	100	53.408	Seriola_lalandi_dorsalis
FBgn0027873	Cpsf100	100	53.433	ENSSPUG00000013485	CPSF2	100	53.674	Sphenodon_punctatus
FBgn0027873	Cpsf100	100	52.689	ENSSPAG00000013284	cpsf2	100	53.894	Stegastes_partitus
FBgn0027873	Cpsf100	100	53.808	ENSSSCG00000002447	CPSF2	100	54.047	Sus_scrofa
FBgn0027873	Cpsf100	100	52.750	ENSTGUG00000012571	-	100	52.993	Taeniopygia_guttata
FBgn0027873	Cpsf100	100	53.656	ENSTRUG00000003742	cpsf2	100	54.151	Takifugu_rubripes
FBgn0027873	Cpsf100	100	54.141	ENSTNIG00000012228	cpsf2	100	54.017	Tetraodon_nigroviridis
FBgn0027873	Cpsf100	99	50.450	ENSTBEG00000004530	CPSF2	84	56.383	Tupaia_belangeri
FBgn0027873	Cpsf100	88	58.333	ENSTTRG00000008697	CPSF2	88	58.333	Tursiops_truncatus
FBgn0027873	Cpsf100	100	53.808	ENSUAMG00000028071	CPSF2	100	54.047	Ursus_americanus
FBgn0027873	Cpsf100	87	68.112	ENSUMAG00000005029	CPSF2	98	67.813	Ursus_maritimus
FBgn0027873	Cpsf100	99	53.625	ENSVPAG00000003503	CPSF2	100	53.865	Vicugna_pacos
FBgn0027873	Cpsf100	100	53.808	ENSVVUG00000024642	CPSF2	100	54.047	Vulpes_vulpes
FBgn0027873	Cpsf100	100	52.244	ENSXETG00000010289	cpsf2	100	52.612	Xenopus_tropicalis
FBgn0027873	Cpsf100	100	53.656	ENSXCOG00000001764	cpsf2	100	53.770	Xiphophorus_couchianus
FBgn0027873	Cpsf100	100	53.656	ENSXMAG00000017048	cpsf2	100	53.770	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	19450530.	IPI	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	19450530.	IDA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	10908584.	ISS	Component
GO:0006378	mRNA polyadenylation	19450530.	IMP	Process
GO:0006378	mRNA polyadenylation	10908584.	ISS	Process
GO:0006379	mRNA cleavage	-	IEA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	18042462.19450530.	IMP	Process