EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0028474 (Gene tree)
Gene ID: 31481
Gene Symbol: CG4119
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 4601 bases
Position: chrX:5666052-5670652
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070765	RRM_1	PF00076.22	1.2e-06	1	1
FBpp0309405	RRM_1	PF00076.22	1.2e-06	1	1
FBpp0070765	PWI	PF01480.17	7.2e-12	1	1
FBpp0309405	PWI	PF01480.17	7.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0340463	-	3857	-	FBpp0309405	998 (aa)	-	Q9V3Y5
FBtr0070799	-	3697	-	FBpp0070765	998 (aa)	-	A9YIP0

Gene Model

Click here to download FBgn0028474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0028474's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0028474	CG4119	67	73.874	ENSAPOG00000017757	rbm25a	87	71.552	Acanthochromis_polyacanthus
FBgn0028474	CG4119	68	70.079	ENSAOCG00000019308	rbm25b	90	74.775	Amphiprion_ocellaris
FBgn0028474	CG4119	70	73.874	ENSAPEG00000007514	rbm25a	91	71.552	Amphiprion_percula
FBgn0028474	CG4119	68	70.079	ENSAPEG00000009666	rbm25b	91	74.775	Amphiprion_percula
FBgn0028474	CG4119	65	73.874	ENSATEG00000017312	rbm25b	88	73.874	Anabas_testudineus
FBgn0028474	CG4119	65	73.874	ENSATEG00000020676	rbm25a	86	71.552	Anabas_testudineus
FBgn0028474	CG4119	65	72.973	ENSACLG00000027482	rbm25a	84	70.690	Astatotilapia_calliptera
FBgn0028474	CG4119	50	64.748	ENSAMXG00000024525	rbm25b	89	72.973	Astyanax_mexicanus
FBgn0028474	CG4119	73	70.079	ENSCSEG00000020737	rbm25b	91	73.874	Cynoglossus_semilaevis
FBgn0028474	CG4119	73	48.000	ENSFHEG00000005318	rbm25a	87	69.231	Fundulus_heteroclitus
FBgn0028474	CG4119	76	66.400	ENSGAFG00000018036	rbm25a	84	69.231	Gambusia_affinis
FBgn0028474	CG4119	63	72.973	ENSHBUG00000016908	rbm25a	85	70.690	Haplochromis_burtoni
FBgn0028474	CG4119	55	32.389	ENSHCOG00000018433	rbm25a	84	34.304	Hippocampus_comes
FBgn0028474	CG4119	71	72.072	ENSKMAG00000016242	rbm25a	84	72.072	Kryptolebias_marmoratus
FBgn0028474	CG4119	69	72.072	ENSLBEG00000010667	rbm25b	86	72.072	Labrus_bergylta
FBgn0028474	CG4119	53	74.775	ENSLACG00000011845	RBM25	85	74.775	Latimeria_chalumnae
FBgn0028474	CG4119	63	72.973	ENSMZEG00005011183	rbm25a	85	70.690	Maylandia_zebra
FBgn0028474	CG4119	71	73.874	ENSMMOG00000009065	rbm25a	86	71.552	Mola_mola
FBgn0028474	CG4119	58	72.973	ENSNBRG00000003761	rbm25a	91	70.690	Neolamprologus_brichardi
FBgn0028474	CG4119	71	72.072	ENSORLG00020016422	rbm25b	89	72.072	Oryzias_latipes_hni
FBgn0028474	CG4119	66	72.072	ENSOMEG00000023172	rbm25b	89	72.072	Oryzias_melastigma
FBgn0028474	CG4119	51	61.972	ENSPKIG00000003203	rbm25b	86	72.414	Paramormyrops_kingsleyae
FBgn0028474	CG4119	76	67.200	ENSPLAG00000018338	rbm25a	93	72.973	Poecilia_latipinna
FBgn0028474	CG4119	76	67.200	ENSPMEG00000024470	rbm25a	85	72.973	Poecilia_mexicana
FBgn0028474	CG4119	70	67.200	ENSPREG00000009228	rbm25a	85	70.085	Poecilia_reticulata
FBgn0028474	CG4119	63	72.973	ENSPNYG00000022596	rbm25a	86	70.690	Pundamilia_nyererei
FBgn0028474	CG4119	65	72.973	ENSPNAG00000012024	rbm25b	82	72.973	Pygocentrus_nattereri
FBgn0028474	CG4119	51	61.972	ENSSFOG00015007093	rbm25	86	72.414	Scleropages_formosus
FBgn0028474	CG4119	63	72.973	ENSSMAG00000009745	rbm25a	86	72.973	Scophthalmus_maximus
FBgn0028474	CG4119	67	73.874	ENSSDUG00000017984	rbm25a	87	71.552	Seriola_dumerili
FBgn0028474	CG4119	67	73.874	ENSSLDG00000010342	rbm25a	87	71.552	Seriola_lalandi_dorsalis
FBgn0028474	CG4119	66	74.775	ENSSPAG00000016168	rbm25b	88	74.775	Stegastes_partitus
FBgn0028474	CG4119	73	70.866	ENSTRUG00000017964	rbm25b	90	75.676	Takifugu_rubripes
FBgn0028474	CG4119	72	72.072	ENSXCOG00000004043	RBM25	83	72.072	Xiphophorus_couchianus
FBgn0028474	CG4119	72	59.459	ENSXMAG00000009077	RBM25	85	72.072	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component