EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0028554 (Gene tree)
Gene ID: 33967
Gene Symbol: x16
Alias: -
Full Name: x16 splicing factor
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5910 bases
Position: chr2L:6914301-6920210
Accession: FBgn0028554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0304606	RRM_1	PF00076.22	1.9e-15	1	1
FBpp0078996	RRM_1	PF00076.22	1.9e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0332328	-	1784	-	FBpp0304606	257 (aa)	-	M9PC85
FBtr0079368	-	1707	-	FBpp0078996	258 (aa)	-	Q9V3V0

Gene Model

Click here to download FBgn0028554's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0028554's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0028554	x16	50	52.672	ENSG00000115875	SRSF7	86	51.562	Homo_sapiens
FBgn0028554	x16	58	47.333	ENSAPOG00000018179	-	73	50.000	Acanthochromis_polyacanthus
FBgn0028554	x16	51	53.285	ENSACIG00000009890	srsf7b	92	52.632	Amphilophus_citrinellus
FBgn0028554	x16	53	49.640	ENSACIG00000016419	-	89	44.385	Amphilophus_citrinellus
FBgn0028554	x16	50	52.672	ENSANAG00000019399	SRSF7	83	51.562	Aotus_nancymaae
FBgn0028554	x16	53	49.640	ENSACLG00000010873	-	89	43.850	Astatotilapia_calliptera
FBgn0028554	x16	51	53.383	ENSAMXG00000007005	srsf7b	55	52.713	Astyanax_mexicanus
FBgn0028554	x16	50	52.672	ENSBTAG00000014891	SRSF7	83	51.562	Bos_taurus
FBgn0028554	x16	50	52.672	ENSCJAG00000015185	SRSF7	83	51.562	Callithrix_jacchus
FBgn0028554	x16	50	52.672	ENSCAFG00020022807	SRSF7	83	51.562	Canis_lupus_dingo
FBgn0028554	x16	50	52.672	ENSCHIG00000019180	SRSF7	83	51.562	Capra_hircus
FBgn0028554	x16	50	52.672	ENSTSYG00000012273	SRSF7	83	51.562	Carlito_syrichta
FBgn0028554	x16	50	52.672	ENSCPOG00000033318	SRSF7	83	51.562	Cavia_porcellus
FBgn0028554	x16	50	52.672	ENSCATG00000031728	SRSF7	83	51.562	Cercocebus_atys
FBgn0028554	x16	50	52.672	ENSCLAG00000005235	SRSF7	83	51.562	Chinchilla_lanigera
FBgn0028554	x16	50	52.672	ENSCPBG00000018247	-	83	51.562	Chrysemys_picta_bellii
FBgn0028554	x16	50	51.908	ENSCPBG00000018252	-	83	50.781	Chrysemys_picta_bellii
FBgn0028554	x16	50	51.852	ENSCSAVG00000007369	-	69	50.000	Ciona_savignyi
FBgn0028554	x16	50	52.672	ENSCANG00000040757	SRSF7	83	51.562	Colobus_angolensis_palliatus
FBgn0028554	x16	55	53.191	ENSCSEG00000006378	srsf7a	78	52.000	Cynoglossus_semilaevis
FBgn0028554	x16	55	48.592	ENSDARG00000059360	srsf3b	63	73.077	Danio_rerio
FBgn0028554	x16	51	51.493	ENSDARG00000101057	srsf7b	95	46.154	Danio_rerio
FBgn0028554	x16	50	52.672	ENSDNOG00000007821	SRSF7	83	51.562	Dasypus_novemcinctus
FBgn0028554	x16	67	39.888	ENSEBUG00000004912	srsf7a	72	46.524	Eptatretus_burgeri
FBgn0028554	x16	57	45.890	ENSEBUG00000002677	-	51	66.667	Eptatretus_burgeri
FBgn0028554	x16	50	52.672	ENSEASG00005005547	SRSF7	83	51.562	Equus_asinus_asinus
FBgn0028554	x16	51	53.383	ENSELUG00000018155	srsf7b	80	54.839	Esox_lucius
FBgn0028554	x16	50	52.672	ENSFCAG00000031143	SRSF7	52	51.562	Felis_catus
FBgn0028554	x16	50	52.672	ENSFDAG00000016030	-	83	51.562	Fukomys_damarensis
FBgn0028554	x16	54	50.360	ENSFHEG00000007159	srsf7a	88	38.397	Fundulus_heteroclitus
FBgn0028554	x16	50	51.908	ENSGAGG00000003553	SRSF7	83	50.781	Gopherus_agassizii
FBgn0028554	x16	50	52.672	ENSGGOG00000014620	SRSF7	83	51.562	Gorilla_gorilla
FBgn0028554	x16	50	42.105	ENSHGLG00000005295	-	91	38.356	Heterocephalus_glaber_female
FBgn0028554	x16	50	42.105	ENSHGLG00100014570	-	91	38.356	Heterocephalus_glaber_male
FBgn0028554	x16	50	52.672	ENSHGLG00100006124	-	83	51.562	Heterocephalus_glaber_male
FBgn0028554	x16	54	46.099	ENSHCOG00000017795	-	93	41.206	Hippocampus_comes
FBgn0028554	x16	57	49.669	ENSIPUG00000011708	srsf7	65	52.344	Ictalurus_punctatus
FBgn0028554	x16	50	52.672	ENSSTOG00000004389	SRSF7	83	51.562	Ictidomys_tridecemlineatus
FBgn0028554	x16	54	43.972	ENSJJAG00000020230	-	67	45.238	Jaculus_jaculus
FBgn0028554	x16	55	48.966	ENSLAFG00000005666	SRSF7	71	51.562	Loxodonta_africana
FBgn0028554	x16	54	50.714	ENSLAFG00000026731	-	87	44.385	Loxodonta_africana
FBgn0028554	x16	50	52.672	ENSMFAG00000001980	SRSF7	83	51.562	Macaca_fascicularis
FBgn0028554	x16	50	52.672	ENSMLEG00000038852	SRSF7	83	51.562	Mandrillus_leucophaeus
FBgn0028554	x16	50	53.435	ENSMAMG00000017138	srsf7b	50	52.344	Mastacembelus_armatus
FBgn0028554	x16	50	52.672	ENSMUSG00000024097	Srsf7	83	51.562	Mus_musculus
FBgn0028554	x16	50	48.485	ENSMLUG00000015692	-	51	49.219	Myotis_lucifugus
FBgn0028554	x16	50	52.672	ENSNLEG00000016349	SRSF7	83	51.562	Nomascus_leucogenys
FBgn0028554	x16	55	49.645	ENSORLG00000000292	srsf3b	69	43.500	Oryzias_latipes
FBgn0028554	x16	55	49.645	ENSORLG00020008172	srsf3b	69	43.500	Oryzias_latipes_hni
FBgn0028554	x16	54	46.429	ENSORLG00020011157	-	61	73.077	Oryzias_latipes_hni
FBgn0028554	x16	55	49.645	ENSORLG00015004309	srsf3b	96	43.500	Oryzias_latipes_hsok
FBgn0028554	x16	55	49.645	ENSOMEG00000014893	srsf3b	96	43.500	Oryzias_melastigma
FBgn0028554	x16	56	37.838	ENSOARG00000017340	-	90	34.545	Ovis_aries
FBgn0028554	x16	50	52.672	ENSPPRG00000003682	SRSF7	52	51.562	Panthera_pardus
FBgn0028554	x16	50	52.672	ENSPTIG00000006350	SRSF7	52	51.562	Panthera_tigris_altaica
FBgn0028554	x16	50	52.672	ENSPTRG00000011851	SRSF7	53	53.279	Pan_troglodytes
FBgn0028554	x16	55	51.034	ENSPKIG00000017425	srsf7b	65	52.344	Paramormyrops_kingsleyae
FBgn0028554	x16	56	49.324	ENSPKIG00000022669	SRSF7	77	50.000	Paramormyrops_kingsleyae
FBgn0028554	x16	54	47.857	ENSPMGG00000004040	srsf3b	96	39.713	Periophthalmus_magnuspinnatus
FBgn0028554	x16	51	50.746	ENSPMGG00000021890	srsf7a	79	52.419	Periophthalmus_magnuspinnatus
FBgn0028554	x16	56	47.619	ENSPCIG00000020726	-	84	50.000	Phascolarctos_cinereus
FBgn0028554	x16	50	52.672	ENSPCIG00000020694	-	83	51.562	Phascolarctos_cinereus
FBgn0028554	x16	50	52.344	ENSPREG00000006149	srsf7b	52	52.344	Poecilia_reticulata
FBgn0028554	x16	53	51.471	ENSPREG00000020685	srsf7a	86	51.200	Poecilia_reticulata
FBgn0028554	x16	54	48.936	ENSPREG00000002610	-	51	74.359	Poecilia_reticulata
FBgn0028554	x16	50	49.618	ENSPCOG00000023721	-	71	49.219	Propithecus_coquereli
FBgn0028554	x16	50	52.672	ENSPCOG00000019422	-	53	52.344	Propithecus_coquereli
FBgn0028554	x16	56	50.000	ENSPNYG00000013747	-	80	47.436	Pundamilia_nyererei
FBgn0028554	x16	50	52.672	ENSRROG00000005080	SRSF7	83	51.562	Rhinopithecus_roxellana
FBgn0028554	x16	50	52.672	ENSSBOG00000025074	SRSF7	83	51.562	Saimiri_boliviensis_boliviensis
FBgn0028554	x16	55	47.887	ENSSMAG00000020812	-	62	73.077	Scophthalmus_maximus
FBgn0028554	x16	55	53.378	ENSSDUG00000021338	srsf7b	83	54.135	Seriola_dumerili
FBgn0028554	x16	50	54.962	ENSSLDG00000021463	srsf7b	64	53.906	Seriola_lalandi_dorsalis
FBgn0028554	x16	53	51.079	ENSSPAG00000022192	srsf7a	91	50.769	Stegastes_partitus
FBgn0028554	x16	50	53.435	ENSSPAG00000017204	srsf7b	81	52.344	Stegastes_partitus
FBgn0028554	x16	50	52.672	ENSSSCG00000008484	SRSF7	83	51.562	Sus_scrofa
FBgn0028554	x16	50	52.672	ENSUAMG00000025051	-	83	51.562	Ursus_americanus
FBgn0028554	x16	50	52.672	ENSVVUG00000018767	-	83	51.562	Vulpes_vulpes
FBgn0028554	x16	61	39.241	ENSVVUG00000006092	-	69	51.389	Vulpes_vulpes
FBgn0028554	x16	50	52.273	ENSXETG00000025300	srsf7	89	44.206	Xenopus_tropicalis
FBgn0028554	x16	53	50.714	ENSXCOG00000009381	srsf7a	86	51.200	Xiphophorus_couchianus
FBgn0028554	x16	50	51.938	ENSXCOG00000010843	srsf7b	79	51.538	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10640718.	ISS	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	10640718.	ISM	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	12134081.17828581.	IDA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008380	RNA splicing	17828581.	IPI	Process
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component