EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0028895 (Gene tree)
Gene ID: 34962
Gene Symbol: CG17328
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1823 bases
Position: chr2L:16299943-16301765
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0308002	zf-C2H2	PF00096.26	5.3e-24	1	4
FBpp0308002	zf-C2H2	PF00096.26	5.3e-24	2	4
FBpp0308002	zf-C2H2	PF00096.26	5.3e-24	3	4
FBpp0308002	zf-C2H2	PF00096.26	5.3e-24	4	4
FBpp0080387	zf-C2H2	PF00096.26	9e-24	1	4
FBpp0080387	zf-C2H2	PF00096.26	9e-24	2	4
FBpp0080387	zf-C2H2	PF00096.26	9e-24	3	4
FBpp0080387	zf-C2H2	PF00096.26	9e-24	4	4
FBpp0308002	zf-met	PF12874.7	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080829	-	1496	-	FBpp0080387	413 (aa)	-	Q9VJL7
FBtr0337079	-	1346	-	FBpp0308002	382 (aa)	-	M9PD13

Gene Model

Click here to download FBgn0028895's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0028895's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0028895	CG17328	59	36.364	FBgn0037923	CG6813	92	36.364
FBgn0028895	CG17328	55	41.667	FBgn0020309	crol	53	38.462
FBgn0028895	CG17328	67	35.514	FBgn0051388	CG31388	93	35.514
FBgn0028895	CG17328	56	36.496	FBgn0285971	prg	80	36.496
FBgn0028895	CG17328	67	41.085	FBgn0038301	CG6654	55	41.085
FBgn0028895	CG17328	54	38.889	FBgn0033934	CG17385	59	38.889
FBgn0028895	CG17328	62	40.187	FBgn0037120	CG11247	66	40.187
FBgn0028895	CG17328	65	36.232	FBgn0030010	CG10959	57	36.232
FBgn0028895	CG17328	62	37.671	FBgn0264744	CG44002	95	34.286
FBgn0028895	CG17328	51	35.252	FBgn0261679	CG42726	52	35.252
FBgn0028895	CG17328	80	40.566	FBgn0037722	CG8319	97	40.566

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0028895	CG17328	54	38.261	ENSAOCG00000018579	-	67	38.261	Amphiprion_ocellaris
FBgn0028895	CG17328	51	38.889	ENSAPEG00000019755	-	83	38.889	Amphiprion_percula
FBgn0028895	CG17328	52	33.735	WBGene00021374	Y37E11B.1	86	36.986	Caenorhabditis_elegans
FBgn0028895	CG17328	66	40.506	ENSCING00000004861	zf(c2h2)-12	73	40.506	Ciona_intestinalis
FBgn0028895	CG17328	54	35.238	ENSCING00000005713	-	69	35.238	Ciona_intestinalis
FBgn0028895	CG17328	51	40.566	ENSCSAVG00000003895	-	99	40.566	Ciona_savignyi
FBgn0028895	CG17328	54	40.506	ENSCSAVG00000005896	-	68	40.506	Ciona_savignyi
FBgn0028895	CG17328	65	37.037	ENSCSAVG00000006729	-	68	41.250	Ciona_savignyi
FBgn0028895	CG17328	55	40.000	ENSCSAVG00000009574	-	99	40.000	Ciona_savignyi
FBgn0028895	CG17328	62	35.766	ENSCSEG00000005491	-	57	35.766	Cynoglossus_semilaevis
FBgn0028895	CG17328	57	41.379	ENSCVAG00000016098	-	89	41.379	Cyprinodon_variegatus
FBgn0028895	CG17328	68	40.299	ENSCVAG00000002295	-	92	42.373	Cyprinodon_variegatus
FBgn0028895	CG17328	59	37.186	ENSEBUG00000004841	-	76	43.182	Eptatretus_burgeri
FBgn0028895	CG17328	53	40.397	ENSEBUG00000008392	-	74	46.341	Eptatretus_burgeri
FBgn0028895	CG17328	57	43.262	ENSEBUG00000015522	-	64	43.262	Eptatretus_burgeri
FBgn0028895	CG17328	71	39.286	ENSEBUG00000000735	-	99	38.384	Eptatretus_burgeri
FBgn0028895	CG17328	60	42.857	ENSELUG00000020794	-	51	42.857	Esox_lucius
FBgn0028895	CG17328	84	42.424	ENSFHEG00000013644	-	91	42.424	Fundulus_heteroclitus
FBgn0028895	CG17328	54	35.766	ENSFHEG00000012990	-	91	38.235	Fundulus_heteroclitus
FBgn0028895	CG17328	52	38.095	ENSGACG00000018415	-	100	38.095	Gasterosteus_aculeatus
FBgn0028895	CG17328	52	30.045	ENSHCOG00000017437	-	66	40.602	Hippocampus_comes
FBgn0028895	CG17328	78	37.179	ENSHCOG00000014881	-	61	41.463	Hippocampus_comes
FBgn0028895	CG17328	64	32.402	ENSHCOG00000008181	-	69	33.333	Hippocampus_comes
FBgn0028895	CG17328	51	34.074	ENSHCOG00000001313	-	56	34.074	Hippocampus_comes
FBgn0028895	CG17328	57	37.607	ENSKMAG00000012909	-	64	39.394	Kryptolebias_marmoratus
FBgn0028895	CG17328	55	33.571	ENSKMAG00000007658	-	86	33.571	Kryptolebias_marmoratus
FBgn0028895	CG17328	73	32.642	ENSONIG00000003224	-	93	33.333	Oreochromis_niloticus
FBgn0028895	CG17328	53	39.048	ENSONIG00000003471	-	99	39.048	Oreochromis_niloticus
FBgn0028895	CG17328	86	39.416	ENSONIG00000016416	-	99	39.416	Oreochromis_niloticus
FBgn0028895	CG17328	72	41.509	ENSONIG00000007812	-	99	41.509	Oreochromis_niloticus
FBgn0028895	CG17328	52	30.657	ENSONIG00000009894	-	92	30.657	Oreochromis_niloticus
FBgn0028895	CG17328	53	41.509	ENSORLG00015018254	-	89	41.509	Oryzias_latipes_hsok
FBgn0028895	CG17328	70	37.333	ENSOMEG00000017673	-	78	38.971	Oryzias_melastigma
FBgn0028895	CG17328	52	35.227	ENSPMGG00000019842	-	69	35.227	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	51	32.778	ENSPMGG00000000218	-	61	33.784	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	52	44.872	ENSPMGG00000000458	-	95	44.872	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	69	32.864	ENSPMGG00000022524	-	94	42.857	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	59	36.087	ENSPMGG00000010664	-	90	38.462	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	54	31.844	ENSPMGG00000010563	-	74	36.441	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	50	42.683	ENSPMGG00000000243	-	78	42.683	Periophthalmus_magnuspinnatus
FBgn0028895	CG17328	52	37.324	ENSPMAG00000007983	-	99	37.324	Petromyzon_marinus
FBgn0028895	CG17328	58	39.500	ENSPFOG00000002879	-	99	37.824	Poecilia_formosa
FBgn0028895	CG17328	51	39.604	ENSPFOG00000020691	-	81	40.187	Poecilia_formosa
FBgn0028895	CG17328	70	35.533	ENSPLAG00000006174	-	69	40.000	Poecilia_latipinna
FBgn0028895	CG17328	51	44.643	ENSPLAG00000011254	-	57	44.643	Poecilia_latipinna
FBgn0028895	CG17328	70	44.643	ENSPMEG00000007503	-	99	44.643	Poecilia_mexicana
FBgn0028895	CG17328	62	36.410	ENSPMEG00000022676	-	100	45.455	Poecilia_mexicana
FBgn0028895	CG17328	63	41.026	ENSPMEG00000019229	-	70	41.026	Poecilia_mexicana
FBgn0028895	CG17328	61	41.026	ENSPREG00000007146	-	77	41.026	Poecilia_reticulata
FBgn0028895	CG17328	51	44.643	ENSPREG00000015352	-	85	44.643	Poecilia_reticulata
FBgn0028895	CG17328	62	39.695	ENSPREG00000016204	-	63	39.394	Poecilia_reticulata
FBgn0028895	CG17328	66	36.567	ENSPNAG00000025211	-	51	36.496	Pygocentrus_nattereri
FBgn0028895	CG17328	53	31.387	ENSSMAG00000000404	-	50	31.387	Scophthalmus_maximus
FBgn0028895	CG17328	52	48.077	ENSSDUG00000000946	-	97	43.182	Seriola_dumerili
FBgn0028895	CG17328	54	30.769	ENSSLDG00000000464	-	53	30.769	Seriola_lalandi_dorsalis
FBgn0028895	CG17328	54	39.259	ENSTNIG00000008154	-	85	39.259	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000976	transcription regulatory region sequence-specific DNA binding	-	ISS	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	ISS	Process
GO:0008270	zinc ion binding	-	ISS	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process