EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0029823 (Gene tree)
Gene ID: 31524
Gene Symbol: Shmt
Alias: -
Full Name: Serine hydroxymethyl transferase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 3731
Position: chrX: 5913067-5916797
Accession: FBgn0029823
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0345317	-	1592	-	FBpp0311477	467 (aa)	-	A9YJ06
FBtr0070827	-	2001	-	FBpp0070792	537 (aa)	-	B7Z0X1
FBtr0290235	-	2054	-	FBpp0288674	467 (aa)	-	B7Z0X1

Gene Model

Click here to download FBgn0029823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0029823's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0029823	Shmt	98	60.131	ENSG00000182199	SHMT2	100	64.530	Homo_sapiens
FBgn0029823	Shmt	98	59.913	ENSMUSG00000025403	Shmt2	91	59.913	Mus_musculus
FBgn0029823	Shmt	99	54.212	YLR058C	SHM2	98	54.212	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000900	translation repressor activity, mRNA regulatory element binding	21873635.	IBA	Function
GO:0004372	glycine hydroxymethyltransferase activity	21873635.	IBA	Function
GO:0004372	glycine hydroxymethyltransferase activity	28515048.	IMP	Function
GO:0004372	glycine hydroxymethyltransferase activity	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	28515048.	IDA	Component
GO:0005737	cytoplasm	28515048.	IDA	Component
GO:0005739	mitochondrion	-	ISS	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006544	glycine metabolic process	21873635.	IBA	Process
GO:0006564	L-serine biosynthetic process	-	ISS	Process
GO:0006565	L-serine catabolic process	21873635.	IBA	Process
GO:0006730	one-carbon metabolic process	21873635.	IBA	Process
GO:0008270	zinc ion binding	21873635.	IBA	Function
GO:0009113	purine nucleobase biosynthetic process	21873635.	IBA	Process
GO:0016597	amino acid binding	21873635.	IBA	Function
GO:0019264	glycine biosynthetic process from serine	21873635.	IBA	Process
GO:0019264	glycine biosynthetic process from serine	28515048.	IMP	Process
GO:0030170	pyridoxal phosphate binding	21873635.	IBA	Function
GO:0035999	tetrahydrofolate interconversion	21873635.	IBA	Process
GO:0042752	regulation of circadian rhythm	28380364.	IMP	Process
GO:0042803	protein homodimerization activity	21873635.	IBA	Function
GO:0046653	tetrahydrofolate metabolic process	21873635.	IBA	Process
GO:0046653	tetrahydrofolate metabolic process	28515048.	IMP	Process
GO:0046655	folic acid metabolic process	21873635.	IBA	Process
GO:0048027	mRNA 5'-UTR binding	21873635.	IBA	Function
GO:0048149	behavioral response to ethanol	19951294.	IMP	Process
GO:0050897	cobalt ion binding	21873635.	IBA	Function
GO:0051289	protein homotetramerization	21873635.	IBA	Process
GO:0070905	serine binding	21873635.	IBA	Function
GO:1904482	cellular response to tetrahydrofolate	21873635.	IBA	Process