EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0029887 (Gene tree)
Gene ID: 31602
Gene Symbol: CG3198
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 5435 bases
Position: chrX:6668539-6673973
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070951	LUC7	PF03194.15	2.6e-117	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0070991	-	4996	-	FBpp0070951	438 (aa)	-	Q9W3X8

Gene Model

Click here to download FBgn0029887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0029887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0029887	CG3198	54	59.375	ENSG00000108848	LUC7L3	99	33.152	Homo_sapiens
FBgn0029887	CG3198	51	68.000	ENSAPOG00000018456	luc7l3	50	68.000	Acanthochromis_polyacanthus
FBgn0029887	CG3198	51	67.347	ENSACIG00000000544	luc7l3	84	67.347	Amphilophus_citrinellus
FBgn0029887	CG3198	51	68.000	ENSAOCG00000002667	-	52	68.000	Amphiprion_ocellaris
FBgn0029887	CG3198	51	68.000	ENSAPEG00000008154	luc7l3	52	68.000	Amphiprion_percula
FBgn0029887	CG3198	54	59.375	ENSANAG00000030274	LUC7L3	70	53.571	Aotus_nancymaae
FBgn0029887	CG3198	57	57.812	ENSAMXG00000020856	luc7l3	52	67.347	Astyanax_mexicanus
FBgn0029887	CG3198	58	47.887	WBGene00016811	C50D2.8	64	54.902	Caenorhabditis_elegans
FBgn0029887	CG3198	50	66.667	ENSCJAG00000018558	LUC7L3	89	70.732	Callithrix_jacchus
FBgn0029887	CG3198	50	68.750	ENSCCAG00000033579	LUC7L3	70	53.571	Cebus_capucinus
FBgn0029887	CG3198	54	59.375	ENSCATG00000034891	LUC7L3	76	50.820	Cercocebus_atys
FBgn0029887	CG3198	52	66.667	ENSCSAVG00000004990	-	80	68.085	Ciona_savignyi
FBgn0029887	CG3198	54	59.375	ENSCANG00000028098	LUC7L3	84	78.947	Colobus_angolensis_palliatus
FBgn0029887	CG3198	60	30.000	ENSEBUG00000003927	luc7l	54	35.417	Eptatretus_burgeri
FBgn0029887	CG3198	54	59.375	ENSFCAG00000012343	LUC7L3	72	54.386	Felis_catus
FBgn0029887	CG3198	53	60.345	ENSGMOG00000003179	luc7l3	50	68.000	Gadus_morhua
FBgn0029887	CG3198	54	59.375	ENSGGOG00000024399	LUC7L3	76	50.820	Gorilla_gorilla
FBgn0029887	CG3198	55	51.471	ENSJJAG00000021606	-	55	56.000	Jaculus_jaculus
FBgn0029887	CG3198	56	52.703	ENSLACG00000006164	LUC7L3	57	69.388	Latimeria_chalumnae
FBgn0029887	CG3198	54	59.375	ENSLAFG00000007054	LUC7L3	52	68.000	Loxodonta_africana
FBgn0029887	CG3198	54	59.375	ENSMFAG00000031780	LUC7L3	76	50.820	Macaca_fascicularis
FBgn0029887	CG3198	54	59.375	ENSMMUG00000010117	LUC7L3	76	50.820	Macaca_mulatta
FBgn0029887	CG3198	54	59.375	ENSMNEG00000005520	LUC7L3	76	50.820	Macaca_nemestrina
FBgn0029887	CG3198	54	59.375	ENSMLEG00000034172	LUC7L3	76	50.820	Mandrillus_leucophaeus
FBgn0029887	CG3198	50	70.213	ENSMICG00000009835	-	84	75.610	Microcebus_murinus
FBgn0029887	CG3198	52	59.375	ENSMICG00000027443	-	87	78.378	Microcebus_murinus
FBgn0029887	CG3198	54	59.375	ENSPPAG00000025115	LUC7L3	76	50.820	Pan_paniscus
FBgn0029887	CG3198	54	59.375	ENSPPRG00000002605	LUC7L3	72	54.386	Panthera_pardus
FBgn0029887	CG3198	54	59.375	ENSPTRG00000009409	LUC7L3	76	50.820	Pan_troglodytes
FBgn0029887	CG3198	54	59.375	ENSPANG00000022461	LUC7L3	87	78.947	Papio_anubis
FBgn0029887	CG3198	52	32.164	ENSPMGG00000006162	zgc:158803	52	38.596	Periophthalmus_magnuspinnatus
FBgn0029887	CG3198	54	32.836	ENSPFOG00000018484	luc7l	56	33.548	Poecilia_formosa
FBgn0029887	CG3198	54	59.375	ENSPCOG00000022270	LUC7L3	70	53.571	Propithecus_coquereli
FBgn0029887	CG3198	54	59.375	ENSRBIG00000032055	LUC7L3	76	50.820	Rhinopithecus_bieti
FBgn0029887	CG3198	54	59.375	ENSRROG00000039925	LUC7L3	76	50.820	Rhinopithecus_roxellana
FBgn0029887	CG3198	54	59.375	ENSSBOG00000034373	LUC7L3	70	53.571	Saimiri_boliviensis_boliviensis
FBgn0029887	CG3198	50	35.417	ENSSHAG00000000566	-	50	34.694	Sarcophilus_harrisii
FBgn0029887	CG3198	53	32.787	ENSTRUG00000016335	luc7l	60	33.333	Takifugu_rubripes
FBgn0029887	CG3198	50	33.333	ENSTNIG00000005519	zgc:158803	82	33.333	Tetraodon_nigroviridis
FBgn0029887	CG3198	56	34.211	ENSTNIG00000012841	luc7l	64	33.333	Tetraodon_nigroviridis
FBgn0029887	CG3198	51	65.306	ENSTNIG00000012633	luc7l3	56	65.306	Tetraodon_nigroviridis
FBgn0029887	CG3198	50	32.258	ENSVPAG00000011896	LUC7L	63	36.842	Vicugna_pacos
FBgn0029887	CG3198	54	58.824	ENSXETG00000011062	luc7l3	53	68.000	Xenopus_tropicalis
FBgn0029887	CG3198	50	33.333	ENSXCOG00000013341	zgc:158803	50	38.596	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	10908584.	ISS	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0010628	positive regulation of gene expression	24643257.	IMP	Process
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component