EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0029959 (Gene tree)
Gene ID: 31684
Gene Symbol: Rab39
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1834 bases
Position: chrX:7734923-7736756
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071030	MMR_HSR1	PF01926.23	2.5e-05	1	1
FBpp0298273	MMR_HSR1	PF01926.23	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0307272	-	1406	-	FBpp0298273	218 (aa)	-	F6J915
FBtr0071072	-	1129	-	FBpp0071030	218 (aa)	-	Q9W3Q0

Gene Model

Click here to download FBgn0029959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0029959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0029959	Rab39	99	42.396	FBgn0285937	Rab1	99	42.396
FBgn0029959	Rab39	98	38.249	FBgn0031882	Rab30	92	38.249
FBgn0029959	Rab39	80	39.429	FBgn0015794	Rab18	84	39.429
FBgn0029959	Rab39	76	34.911	FBgn0015795	Rab7	79	34.911
FBgn0029959	Rab39	75	41.104	FBgn0015797	Rab6	76	41.104
FBgn0029959	Rab39	98	42.723	FBgn0015790	Rab11	96	42.723
FBgn0029959	Rab39	90	43.878	FBgn0015791	Rab14	89	43.878
FBgn0029959	Rab39	78	39.205	FBgn0035155	RabX6	80	39.205
FBgn0029959	Rab39	78	45.882	FBgn0031090	Rab35	82	45.882
FBgn0029959	Rab39	77	41.317	FBgn0014010	Rab5	74	41.317
FBgn0029959	Rab39	77	31.138	FBgn0003205	Ras85D	85	31.138
FBgn0029959	Rab39	82	33.505	FBgn0035255	RabX5	65	33.505
FBgn0029959	Rab39	75	34.545	FBgn0015372	RabX1	61	34.545
FBgn0029959	Rab39	75	37.805	FBgn0039966	Rab21	72	37.805
FBgn0029959	Rab39	71	34.839	FBgn0037364	Rab23	63	34.091
FBgn0029959	Rab39	72	32.484	FBgn0041191	Rheb	84	32.484
FBgn0029959	Rab39	98	48.148	FBgn0014009	Rab2	99	48.148

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0029959	Rab39	92	57.635	WBGene00004286	rab-39	87	57.635	Caenorhabditis_elegans
FBgn0029959	Rab39	99	58.796	ENSCSAVG00000008684	-	99	58.796	Ciona_savignyi
FBgn0029959	Rab39	90	52.551	ENSEBUG00000004971	-	89	52.551	Eptatretus_burgeri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	11104523.	ISS	Function
GO:0005515	protein binding	25453831.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005770	late endosome	22000105.	HDA	Component
GO:0005794	Golgi apparatus	25453831.	IDA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0016192	vesicle-mediated transport	-	ISS	Process
GO:0031982	vesicle	-	ISS	Component
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	-	ISS	Process
GO:0043025	neuronal cell body	22000105.	HDA	Component
GO:0043025	neuronal cell body	22844416.	IDA	Component
GO:0045202	synapse	22844416.	IDA	Component