EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0029992 (Gene tree)
Gene ID: 31724
Gene Symbol: Upf2
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5223 bases
Position: chrX:8070244-8075466
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071072	Upf2	PF04050.14	2.9e-22	1	1
FBpp0071072	MIF4G	PF02854.19	7.3e-81	1	3
FBpp0071072	MIF4G	PF02854.19	7.3e-81	2	3
FBpp0071072	MIF4G	PF02854.19	7.3e-81	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071117	-	5078	-	FBpp0071072	1241 (aa)	-	Q7YU82

Gene Model

Click here to download FBgn0029992's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0029992's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0029992	Upf2	82	43.860	ENSG00000151461	UPF2	89	36.439	Homo_sapiens
FBgn0029992	Upf2	90	37.908	ENSAPOG00000015837	UPF2	89	35.079	Acanthochromis_polyacanthus
FBgn0029992	Upf2	82	43.860	ENSAMEG00000004586	UPF2	89	36.469	Ailuropoda_melanoleuca
FBgn0029992	Upf2	90	39.719	ENSAOCG00000016766	UPF2	89	36.296	Amphiprion_ocellaris
FBgn0029992	Upf2	90	39.610	ENSAPEG00000019084	UPF2	89	36.296	Amphiprion_percula
FBgn0029992	Upf2	73	39.274	ENSATEG00000021677	UPF2	89	35.575	Anabas_testudineus
FBgn0029992	Upf2	95	36.401	ENSAPLG00000010287	UPF2	89	36.689	Anas_platyrhynchos
FBgn0029992	Upf2	73	43.860	ENSANAG00000028451	UPF2	83	40.615	Aotus_nancymaae
FBgn0029992	Upf2	80	43.011	ENSBTAG00000000288	UPF2	84	43.011	Bos_taurus
FBgn0029992	Upf2	80	47.297	ENSCJAG00000020685	UPF2	89	36.281	Callithrix_jacchus
FBgn0029992	Upf2	82	43.750	ENSCAFG00020005882	UPF2	89	36.257	Canis_lupus_dingo
FBgn0029992	Upf2	95	36.175	ENSTSYG00000000935	UPF2	89	36.555	Carlito_syrichta
FBgn0029992	Upf2	73	36.501	ENSCAPG00000016658	UPF2	94	37.228	Cavia_aperea
FBgn0029992	Upf2	82	43.860	ENSCPOG00000008809	UPF2	89	34.657	Cavia_porcellus
FBgn0029992	Upf2	82	43.860	ENSCCAG00000035991	UPF2	89	35.187	Cebus_capucinus
FBgn0029992	Upf2	82	43.860	ENSCATG00000032679	UPF2	89	36.439	Cercocebus_atys
FBgn0029992	Upf2	82	43.860	ENSCLAG00000011434	UPF2	89	36.221	Chinchilla_lanigera
FBgn0029992	Upf2	82	43.860	ENSCSAG00000013372	UPF2	89	36.439	Chlorocebus_sabaeus
FBgn0029992	Upf2	64	47.781	ENSCHOG00000000422	UPF2	72	47.781	Choloepus_hoffmanni
FBgn0029992	Upf2	81	44.037	ENSCPBG00000027823	UPF2	91	36.039	Chrysemys_picta_bellii
FBgn0029992	Upf2	64	40.192	ENSCSAVG00000007772	-	88	34.621	Ciona_savignyi
FBgn0029992	Upf2	73	39.457	ENSCANG00000040396	UPF2	88	34.938	Colobus_angolensis_palliatus
FBgn0029992	Upf2	90	39.474	ENSCSEG00000003520	UPF2	89	35.607	Cynoglossus_semilaevis
FBgn0029992	Upf2	73	39.912	ENSCVAG00000006167	UPF2	90	36.104	Cyprinodon_variegatus
FBgn0029992	Upf2	82	42.105	ENSDNOG00000018160	UPF2	89	36.228	Dasypus_novemcinctus
FBgn0029992	Upf2	62	43.878	ENSEBUG00000012448	-	78	43.878	Eptatretus_burgeri
FBgn0029992	Upf2	82	43.860	ENSEASG00005019274	UPF2	88	38.503	Equus_asinus_asinus
FBgn0029992	Upf2	82	43.860	ENSECAG00000017022	UPF2	89	36.304	Equus_caballus
FBgn0029992	Upf2	50	41.228	ENSEEUG00000007819	UPF2	63	40.290	Erinaceus_europaeus
FBgn0029992	Upf2	79	47.297	ENSFCAG00000005785	UPF2	89	36.559	Felis_catus
FBgn0029992	Upf2	90	39.869	ENSFALG00000001889	UPF2	88	36.595	Ficedula_albicollis
FBgn0029992	Upf2	90	39.040	ENSFDAG00000014348	UPF2	89	36.139	Fukomys_damarensis
FBgn0029992	Upf2	73	39.384	ENSFHEG00000009826	UPF2	90	36.163	Fundulus_heteroclitus
FBgn0029992	Upf2	73	39.760	ENSGALG00000033772	UPF2	90	36.289	Gallus_gallus
FBgn0029992	Upf2	95	35.390	ENSGAFG00000020867	UPF2	89	35.814	Gambusia_affinis
FBgn0029992	Upf2	82	43.860	ENSGGOG00000001479	UPF2	89	36.439	Gorilla_gorilla
FBgn0029992	Upf2	82	43.860	ENSHGLG00000015176	-	89	36.146	Heterocephalus_glaber_female
FBgn0029992	Upf2	81	41.667	ENSHGLG00000003822	-	90	32.261	Heterocephalus_glaber_female
FBgn0029992	Upf2	79	43.860	ENSHGLG00100010036	UPF2	89	35.949	Heterocephalus_glaber_male
FBgn0029992	Upf2	73	39.130	ENSHCOG00000004025	UPF2	89	36.237	Hippocampus_comes
FBgn0029992	Upf2	82	43.860	ENSSTOG00000013075	UPF2	89	36.469	Ictidomys_tridecemlineatus
FBgn0029992	Upf2	90	39.149	ENSJJAG00000004913	Upf2	89	36.251	Jaculus_jaculus
FBgn0029992	Upf2	90	38.840	ENSLBEG00000016394	-	89	36.493	Labrus_bergylta
FBgn0029992	Upf2	71	38.939	ENSLBEG00000000728	-	86	38.075	Labrus_bergylta
FBgn0029992	Upf2	90	39.040	ENSLOCG00000015698	UPF2	90	36.048	Lepisosteus_oculatus
FBgn0029992	Upf2	82	43.860	ENSMFAG00000043865	UPF2	89	36.439	Macaca_fascicularis
FBgn0029992	Upf2	82	43.860	ENSMMUG00000008241	UPF2	89	36.439	Macaca_mulatta
FBgn0029992	Upf2	73	39.457	ENSMNEG00000008062	UPF2	86	39.690	Macaca_nemestrina
FBgn0029992	Upf2	82	43.860	ENSMLEG00000036120	UPF2	89	36.349	Mandrillus_leucophaeus
FBgn0029992	Upf2	90	39.956	ENSMAMG00000018276	UPF2	90	36.252	Mastacembelus_armatus
FBgn0029992	Upf2	73	39.651	ENSMGAG00000004573	UPF2	89	35.912	Meleagris_gallopavo
FBgn0029992	Upf2	82	43.750	ENSMAUG00000016512	Upf2	88	35.149	Mesocricetus_auratus
FBgn0029992	Upf2	80	43.750	ENSMOCG00000008263	Upf2	89	36.672	Microtus_ochrogaster
FBgn0029992	Upf2	89	39.361	ENSMMOG00000006528	UPF2	90	36.197	Mola_mola
FBgn0029992	Upf2	82	43.860	ENSMPUG00000001064	UPF2	89	36.469	Mustela_putorius_furo
FBgn0029992	Upf2	82	43.860	ENSNLEG00000012058	UPF2	89	36.439	Nomascus_leucogenys
FBgn0029992	Upf2	57	42.982	ENSOPRG00000006801	-	72	35.915	Ochotona_princeps
FBgn0029992	Upf2	90	39.040	ENSODEG00000001290	UPF2	89	36.139	Octodon_degus
FBgn0029992	Upf2	81	42.982	ENSOCUG00000006230	UPF2	89	36.469	Oryctolagus_cuniculus
FBgn0029992	Upf2	90	36.513	ENSOMEG00000023420	UPF2	87	34.265	Oryzias_melastigma
FBgn0029992	Upf2	82	43.860	ENSPPAG00000037953	UPF2	89	35.667	Pan_paniscus
FBgn0029992	Upf2	82	43.860	ENSPPRG00000000690	UPF2	89	36.559	Panthera_pardus
FBgn0029992	Upf2	82	43.860	ENSPTIG00000008867	UPF2	89	36.559	Panthera_tigris_altaica
FBgn0029992	Upf2	82	43.860	ENSPTRG00000002291	UPF2	89	36.439	Pan_troglodytes
FBgn0029992	Upf2	82	43.860	ENSPANG00000023399	UPF2	89	36.469	Papio_anubis
FBgn0029992	Upf2	90	40.220	ENSPKIG00000025502	UPF2	89	36.186	Paramormyrops_kingsleyae
FBgn0029992	Upf2	52	38.602	ENSPSIG00000015158	UPF2	80	38.580	Pelodiscus_sinensis
FBgn0029992	Upf2	95	36.154	ENSPMGG00000005259	UPF2	90	36.334	Periophthalmus_magnuspinnatus
FBgn0029992	Upf2	90	39.325	ENSPCIG00000006656	UPF2	90	36.020	Phascolarctos_cinereus
FBgn0029992	Upf2	73	39.274	ENSPFOG00000017118	UPF2	89	35.650	Poecilia_formosa
FBgn0029992	Upf2	73	39.274	ENSPLAG00000005094	UPF2	89	35.650	Poecilia_latipinna
FBgn0029992	Upf2	73	39.164	ENSPMEG00000017009	UPF2	89	35.568	Poecilia_mexicana
FBgn0029992	Upf2	73	39.604	ENSPREG00000021880	UPF2	89	35.885	Poecilia_reticulata
FBgn0029992	Upf2	55	43.860	ENSPPYG00000002089	-	97	35.169	Pongo_abelii
FBgn0029992	Upf2	85	32.943	ENSPCAG00000000684	UPF2	85	31.234	Procavia_capensis
FBgn0029992	Upf2	95	36.023	ENSPCOG00000021656	UPF2	88	36.548	Propithecus_coquereli
FBgn0029992	Upf2	73	43.860	ENSPVAG00000017286	UPF2	82	38.920	Pteropus_vampyrus
FBgn0029992	Upf2	90	38.303	ENSPNAG00000009357	UPF2	89	35.778	Pygocentrus_nattereri
FBgn0029992	Upf2	82	39.262	ENSRNOG00000023593	Upf2	92	42.391	Rattus_norvegicus
FBgn0029992	Upf2	82	43.860	ENSRBIG00000037780	UPF2	89	35.614	Rhinopithecus_bieti
FBgn0029992	Upf2	83	43.860	ENSRROG00000043547	UPF2	89	36.439	Rhinopithecus_roxellana
FBgn0029992	Upf2	96	36.146	ENSSBOG00000020012	UPF2	89	36.251	Saimiri_boliviensis_boliviensis
FBgn0029992	Upf2	95	36.042	ENSSFOG00015023788	upf2	90	36.032	Scleropages_formosus
FBgn0029992	Upf2	72	37.251	ENSSMAG00000007637	UPF2	89	36.120	Scophthalmus_maximus
FBgn0029992	Upf2	95	36.060	ENSSDUG00000017244	UPF2	89	36.522	Seriola_dumerili
FBgn0029992	Upf2	90	39.016	ENSSLDG00000016866	UPF2	89	36.692	Seriola_lalandi_dorsalis
FBgn0029992	Upf2	82	43.860	ENSSARG00000008615	UPF2	89	35.638	Sorex_araneus
FBgn0029992	Upf2	95	35.519	ENSSPUG00000014544	UPF2	88	35.222	Sphenodon_punctatus
FBgn0029992	Upf2	59	43.860	ENSSSCG00000011117	-	92	43.011	Sus_scrofa
FBgn0029992	Upf2	73	35.839	ENSTBEG00000012679	UPF2	81	33.302	Tupaia_belangeri
FBgn0029992	Upf2	85	43.750	ENSTTRG00000016388	UPF2	90	36.207	Tursiops_truncatus
FBgn0029992	Upf2	82	43.860	ENSUAMG00000023560	UPF2	86	43.011	Ursus_americanus
FBgn0029992	Upf2	82	43.860	ENSUMAG00000012953	UPF2	84	36.386	Ursus_maritimus
FBgn0029992	Upf2	73	37.268	ENSVPAG00000006763	UPF2	72	37.179	Vicugna_pacos
FBgn0029992	Upf2	73	39.542	ENSVVUG00000006166	UPF2	89	36.469	Vulpes_vulpes
FBgn0029992	Upf2	90	40.000	ENSXETG00000033103	UPF2	90	36.490	Xenopus_tropicalis
FBgn0029992	Upf2	73	39.364	ENSXCOG00000011604	UPF2	90	35.732	Xiphophorus_couchianus
FBgn0029992	Upf2	73	39.384	ENSXMAG00000017209	UPF2	89	35.732	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	20826458.	IDA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	16177138.21317294.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0007274	neuromuscular synaptic transmission	20826458.	IDA	Process
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035195	gene silencing by miRNA	16177138.	IMP	Process
GO:0050808	synapse organization	20826458.	IDA	Process