EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0030085 (Gene tree)
Gene ID: 31837
Gene Symbol: CG6999
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 948 bases
Position: chrX:9088367-9089314
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071225	RRM_1	PF00076.22	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071288	-	875	-	FBpp0071225	233 (aa)	-	B4F578

Gene Model

Click here to download FBgn0030085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0030085's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0030085	CG6999	70	43.293	FBgn0085693	CG41562	72	44.512
FBgn0030085	CG6999	70	43.293	FBgn0085521	CG40813	72	44.512
FBgn0030085	CG6999	70	41.104	FBgn0030524	CG10993	71	41.104
FBgn0030085	CG6999	100	96.137	FBgn0052706	CG32706	100	96.137

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0030085	CG6999	66	35.366	ENSCSAVG00000003960	-	55	38.519	Ciona_savignyi

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0034462	small-subunit processome assembly	21873635.	IBA	Process