EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0030354 (Gene tree)
Gene ID: 32153
Gene Symbol: Upf1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5376 bases
Position: chrX:11899996-11905371
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073433	UPF1_Zn_bind	PF09416.10	3.5e-73	1	1
FBpp0309612	UPF1_Zn_bind	PF09416.10	3.5e-73	1	1
FBpp0073433	ResIII	PF04851.15	3.2e-05	1	1
FBpp0309612	ResIII	PF04851.15	3.2e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0073596	-	5187	-	FBpp0073433	1180 (aa)	-	Q9VYS3
FBtr0342744	-	4709	-	FBpp0309612	1180 (aa)	-	Q9VYS3

Gene Model

Click here to download FBgn0030354's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0030354's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0030354	Upf1	84	67.433	ENSG00000005007	UPF1	85	70.941	Homo_sapiens
FBgn0030354	Upf1	81	71.162	ENSAPOG00000010916	-	86	71.534	Acanthochromis_polyacanthus
FBgn0030354	Upf1	82	70.872	ENSAPOG00000023773	upf1	86	72.187	Acanthochromis_polyacanthus
FBgn0030354	Upf1	84	66.794	ENSAMEG00000011474	UPF1	85	70.329	Ailuropoda_melanoleuca
FBgn0030354	Upf1	75	73.678	ENSACIG00000010985	-	84	74.971	Amphilophus_citrinellus
FBgn0030354	Upf1	82	70.637	ENSACIG00000019949	upf1	85	72.359	Amphilophus_citrinellus
FBgn0030354	Upf1	82	70.872	ENSAOCG00000018519	upf1	85	71.505	Amphiprion_ocellaris
FBgn0030354	Upf1	81	71.162	ENSAOCG00000006352	-	86	71.714	Amphiprion_ocellaris
FBgn0030354	Upf1	82	70.872	ENSAPEG00000016344	upf1	85	71.505	Amphiprion_percula
FBgn0030354	Upf1	81	71.162	ENSAPEG00000006292	-	86	71.714	Amphiprion_percula
FBgn0030354	Upf1	81	70.924	ENSATEG00000017867	upf1	83	72.252	Anabas_testudineus
FBgn0030354	Upf1	81	71.058	ENSATEG00000016606	-	86	71.429	Anabas_testudineus
FBgn0030354	Upf1	78	70.855	ENSAPLG00000009175	UPF1	83	74.263	Anas_platyrhynchos
FBgn0030354	Upf1	80	68.930	ENSANAG00000024107	UPF1	80	72.849	Aotus_nancymaae
FBgn0030354	Upf1	81	71.132	ENSACLG00000007181	upf1	85	72.465	Astatotilapia_calliptera
FBgn0030354	Upf1	82	70.667	ENSACLG00000022630	-	85	72.187	Astatotilapia_calliptera
FBgn0030354	Upf1	81	71.369	ENSAMXG00000042187	upf1	85	72.495	Astyanax_mexicanus
FBgn0030354	Upf1	84	66.857	ENSBTAG00000020922	UPF1	85	70.287	Bos_taurus
FBgn0030354	Upf1	77	52.407	WBGene00004880	smg-2	84	52.407	Caenorhabditis_elegans
FBgn0030354	Upf1	84	66.730	ENSCJAG00000019627	UPF1	85	70.143	Callithrix_jacchus
FBgn0030354	Upf1	84	66.667	ENSCAFG00000014578	UPF1	85	70.072	Canis_familiaris
FBgn0030354	Upf1	84	67.368	ENSCAFG00020012347	UPF1	85	70.868	Canis_lupus_dingo
FBgn0030354	Upf1	84	67.562	ENSCHIG00000011018	UPF1	85	71.088	Capra_hircus
FBgn0030354	Upf1	80	69.753	ENSTSYG00000008877	UPF1	82	73.743	Carlito_syrichta
FBgn0030354	Upf1	80	69.959	ENSCAPG00000005758	UPF1	80	73.631	Cavia_aperea
FBgn0030354	Upf1	84	68.213	ENSCPOG00000025463	UPF1	85	71.503	Cavia_porcellus
FBgn0030354	Upf1	84	67.433	ENSCCAG00000032175	UPF1	85	70.941	Cebus_capucinus
FBgn0030354	Upf1	80	69.650	ENSCATG00000040306	UPF1	82	73.631	Cercocebus_atys
FBgn0030354	Upf1	80	69.959	ENSCLAG00000004037	UPF1	84	73.631	Chinchilla_lanigera
FBgn0030354	Upf1	84	67.433	ENSCSAG00000005276	UPF1	85	70.941	Chlorocebus_sabaeus
FBgn0030354	Upf1	84	67.965	ENSCPBG00000012513	UPF1	85	71.102	Chrysemys_picta_bellii
FBgn0030354	Upf1	72	70.340	ENSCING00000021399	-	99	70.340	Ciona_intestinalis
FBgn0030354	Upf1	79	67.234	ENSCSAVG00000006533	-	85	67.340	Ciona_savignyi
FBgn0030354	Upf1	80	69.650	ENSCANG00000029819	UPF1	82	73.631	Colobus_angolensis_palliatus
FBgn0030354	Upf1	84	67.372	ENSCGRG00001021067	Upf1	87	70.290	Cricetulus_griseus_chok1gshd
FBgn0030354	Upf1	80	69.239	ENSCGRG00000013480	Upf1	83	73.296	Cricetulus_griseus_crigri
FBgn0030354	Upf1	79	69.050	ENSCSEG00000017239	upf1	85	69.050	Cynoglossus_semilaevis
FBgn0030354	Upf1	84	69.376	ENSCSEG00000016159	-	86	72.000	Cynoglossus_semilaevis
FBgn0030354	Upf1	81	70.954	ENSCVAG00000010561	upf1	86	71.504	Cyprinodon_variegatus
FBgn0030354	Upf1	82	70.812	ENSDARG00000016302	upf1	85	72.495	Danio_rerio
FBgn0030354	Upf1	71	74.794	ENSDORG00000009984	Upf1	77	74.794	Dipodomys_ordii
FBgn0030354	Upf1	51	68.576	ENSEBUG00000010069	upf1	96	68.740	Eptatretus_burgeri
FBgn0030354	Upf1	84	67.562	ENSEASG00005006549	UPF1	85	71.088	Equus_asinus_asinus
FBgn0030354	Upf1	84	67.562	ENSECAG00000010639	UPF1	85	71.088	Equus_caballus
FBgn0030354	Upf1	81	70.691	ENSELUG00000012916	-	85	71.822	Esox_lucius
FBgn0030354	Upf1	81	70.894	ENSELUG00000020917	upf1	91	72.009	Esox_lucius
FBgn0030354	Upf1	84	66.572	ENSFCAG00000009757	UPF1	85	69.969	Felis_catus
FBgn0030354	Upf1	78	71.383	ENSFALG00000009312	UPF1	80	74.743	Ficedula_albicollis
FBgn0030354	Upf1	80	69.959	ENSFDAG00000014816	UPF1	84	73.631	Fukomys_damarensis
FBgn0030354	Upf1	88	67.240	ENSFHEG00000006428	upf1	89	71.309	Fundulus_heteroclitus
FBgn0030354	Upf1	68	76.980	ENSFHEG00000016276	-	79	78.261	Fundulus_heteroclitus
FBgn0030354	Upf1	81	70.113	ENSGMOG00000007541	upf1	86	70.539	Gadus_morhua
FBgn0030354	Upf1	84	67.895	ENSGALG00000003220	UPF1	85	71.132	Gallus_gallus
FBgn0030354	Upf1	81	71.058	ENSGAFG00000004831	upf1	86	71.609	Gambusia_affinis
FBgn0030354	Upf1	58	75.292	ENSGAFG00000015443	-	84	75.292	Gambusia_affinis
FBgn0030354	Upf1	84	68.395	ENSGAGG00000022217	UPF1	85	71.682	Gopherus_agassizii
FBgn0030354	Upf1	80	70.447	ENSGGOG00000002608	UPF1	83	74.548	Gorilla_gorilla
FBgn0030354	Upf1	76	63.008	ENSHBUG00000014694	upf1	92	63.227	Haplochromis_burtoni
FBgn0030354	Upf1	78	72.108	ENSHBUG00000008939	upf1	91	72.030	Haplochromis_burtoni
FBgn0030354	Upf1	84	66.919	ENSHGLG00000010900	UPF1	85	70.143	Heterocephalus_glaber_female
FBgn0030354	Upf1	80	68.519	ENSHGLG00100005904	UPF1	81	72.179	Heterocephalus_glaber_male
FBgn0030354	Upf1	81	71.058	ENSHCOG00000008918	upf1	85	73.273	Hippocampus_comes
FBgn0030354	Upf1	81	71.503	ENSIPUG00000005108	UPF1	85	72.785	Ictalurus_punctatus
FBgn0030354	Upf1	84	67.720	ENSSTOG00000009196	UPF1	85	70.941	Ictidomys_tridecemlineatus
FBgn0030354	Upf1	84	66.699	ENSJJAG00000023151	Upf1	85	70.237	Jaculus_jaculus
FBgn0030354	Upf1	81	70.954	ENSKMAG00000004962	upf1	86	71.324	Kryptolebias_marmoratus
FBgn0030354	Upf1	81	70.704	ENSLBEG00000027848	-	86	71.144	Labrus_bergylta
FBgn0030354	Upf1	81	71.266	ENSLBEG00000014862	upf1	83	72.601	Labrus_bergylta
FBgn0030354	Upf1	50	71.523	ENSLACG00000008482	UPF1	76	76.994	Latimeria_chalumnae
FBgn0030354	Upf1	81	71.355	ENSLOCG00000002072	upf1	85	72.582	Lepisosteus_oculatus
FBgn0030354	Upf1	84	66.793	ENSLAFG00000014963	UPF1	85	70.215	Loxodonta_africana
FBgn0030354	Upf1	84	67.240	ENSMFAG00000037748	UPF1	85	70.722	Macaca_fascicularis
FBgn0030354	Upf1	84	67.048	ENSMMUG00000023286	UPF1	85	70.504	Macaca_mulatta
FBgn0030354	Upf1	84	67.240	ENSMNEG00000000046	UPF1	85	70.722	Macaca_nemestrina
FBgn0030354	Upf1	80	69.650	ENSMLEG00000028404	UPF1	84	73.631	Mandrillus_leucophaeus
FBgn0030354	Upf1	81	71.192	ENSMAMG00000006231	-	86	71.563	Mastacembelus_armatus
FBgn0030354	Upf1	81	71.443	ENSMAMG00000006229	upf1	83	72.572	Mastacembelus_armatus
FBgn0030354	Upf1	82	70.667	ENSMZEG00005016386	-	85	72.187	Maylandia_zebra
FBgn0030354	Upf1	81	71.132	ENSMZEG00005003489	upf1	84	72.650	Maylandia_zebra
FBgn0030354	Upf1	78	70.464	ENSMGAG00000004745	UPF1	83	73.839	Meleagris_gallopavo
FBgn0030354	Upf1	80	69.239	ENSMAUG00000011398	Upf1	80	73.296	Mesocricetus_auratus
FBgn0030354	Upf1	84	67.485	ENSMICG00000001659	UPF1	85	70.941	Microcebus_murinus
FBgn0030354	Upf1	84	66.667	ENSMOCG00000005699	Upf1	85	70.195	Microtus_ochrogaster
FBgn0030354	Upf1	75	71.685	ENSMMOG00000007537	-	83	72.178	Mola_mola
FBgn0030354	Upf1	81	71.236	ENSMMOG00000007881	upf1	85	72.650	Mola_mola
FBgn0030354	Upf1	80	71.022	ENSMODG00000003689	UPF1	86	69.654	Monodelphis_domestica
FBgn0030354	Upf1	81	70.790	ENSMALG00000000144	upf1	86	72.115	Monopterus_albus
FBgn0030354	Upf1	81	70.114	ENSMALG00000018100	-	84	71.353	Monopterus_albus
FBgn0030354	Upf1	99	61.379	MGP_CAROLIEiJ_G0031142	Upf1	85	70.894	Mus_caroli
FBgn0030354	Upf1	99	61.379	ENSMUSG00000058301	Upf1	85	70.894	Mus_musculus
FBgn0030354	Upf1	99	61.379	MGP_PahariEiJ_G0021607	Upf1	85	70.894	Mus_pahari
FBgn0030354	Upf1	99	61.379	MGP_SPRETEiJ_G0032260	Upf1	85	70.894	Mus_spretus
FBgn0030354	Upf1	84	67.368	ENSMPUG00000015516	UPF1	85	70.868	Mustela_putorius_furo
FBgn0030354	Upf1	84	67.404	ENSMLUG00000012122	UPF1	85	70.924	Myotis_lucifugus
FBgn0030354	Upf1	84	66.477	ENSNGAG00000024107	Upf1	85	69.877	Nannospalax_galili
FBgn0030354	Upf1	82	67.717	ENSNBRG00000022069	-	84	74.365	Neolamprologus_brichardi
FBgn0030354	Upf1	77	72.917	ENSNBRG00000000670	upf1	83	72.887	Neolamprologus_brichardi
FBgn0030354	Upf1	80	64.918	ENSNLEG00000006062	UPF1	83	68.492	Nomascus_leucogenys
FBgn0030354	Upf1	68	66.828	ENSMEUG00000014146	-	68	75.000	Notamacropus_eugenii
FBgn0030354	Upf1	75	69.921	ENSOPRG00000014018	UPF1	83	71.068	Ochotona_princeps
FBgn0030354	Upf1	84	67.761	ENSODEG00000012426	UPF1	85	71.324	Octodon_degus
FBgn0030354	Upf1	82	70.667	ENSONIG00000012729	-	85	72.187	Oreochromis_niloticus
FBgn0030354	Upf1	82	70.769	ENSONIG00000010452	upf1	84	72.650	Oreochromis_niloticus
FBgn0030354	Upf1	84	66.889	ENSOANG00000004568	UPF1	86	70.123	Ornithorhynchus_anatinus
FBgn0030354	Upf1	81	70.954	ENSORLG00000008453	upf1	86	71.399	Oryzias_latipes
FBgn0030354	Upf1	81	70.777	ENSORLG00020014758	upf1	86	71.218	Oryzias_latipes_hni
FBgn0030354	Upf1	81	70.777	ENSORLG00015010165	upf1	86	71.218	Oryzias_latipes_hsok
FBgn0030354	Upf1	81	70.747	ENSOMEG00000003665	upf1	86	71.113	Oryzias_melastigma
FBgn0030354	Upf1	84	67.433	ENSOGAG00000012866	UPF1	85	70.941	Otolemur_garnettii
FBgn0030354	Upf1	84	66.285	ENSOARG00000010739	UPF1	88	69.794	Ovis_aries
FBgn0030354	Upf1	80	69.650	ENSPPAG00000043884	UPF1	81	73.631	Pan_paniscus
FBgn0030354	Upf1	84	66.572	ENSPPRG00000023470	UPF1	85	69.969	Panthera_pardus
FBgn0030354	Upf1	79	69.304	ENSPTIG00000010159	UPF1	82	73.364	Panthera_tigris_altaica
FBgn0030354	Upf1	84	67.240	ENSPTRG00000010721	UPF1	85	70.722	Pan_troglodytes
FBgn0030354	Upf1	84	67.240	ENSPANG00000008847	UPF1	85	70.722	Papio_anubis
FBgn0030354	Upf1	87	67.625	ENSPKIG00000006069	upf1	90	72.611	Paramormyrops_kingsleyae
FBgn0030354	Upf1	56	69.242	ENSPSIG00000009491	UPF1	78	73.849	Pelodiscus_sinensis
FBgn0030354	Upf1	82	70.348	ENSPMGG00000017327	upf1	84	72.465	Periophthalmus_magnuspinnatus
FBgn0030354	Upf1	84	66.667	ENSPEMG00000001085	Upf1	85	70.092	Peromyscus_maniculatus_bairdii
FBgn0030354	Upf1	79	72.622	ENSPMAG00000001206	upf1	98	72.622	Petromyzon_marinus
FBgn0030354	Upf1	84	67.926	ENSPCIG00000006156	UPF1	85	70.941	Phascolarctos_cinereus
FBgn0030354	Upf1	81	71.058	ENSPLAG00000016232	-	86	71.609	Poecilia_latipinna
FBgn0030354	Upf1	87	67.437	ENSPLAG00000018155	-	84	72.465	Poecilia_latipinna
FBgn0030354	Upf1	88	67.143	ENSPMEG00000011443	-	85	72.572	Poecilia_mexicana
FBgn0030354	Upf1	81	70.984	ENSPMEG00000016319	-	86	71.534	Poecilia_mexicana
FBgn0030354	Upf1	81	71.058	ENSPREG00000011247	-	86	71.609	Poecilia_reticulata
FBgn0030354	Upf1	81	71.162	ENSPREG00000009940	upf1	84	72.601	Poecilia_reticulata
FBgn0030354	Upf1	84	63.576	ENSPPYG00000009752	UPF1	85	66.804	Pongo_abelii
FBgn0030354	Upf1	51	83.729	ENSPCAG00000012962	UPF1	54	83.729	Procavia_capensis
FBgn0030354	Upf1	84	67.112	ENSPCOG00000023813	UPF1	85	70.576	Propithecus_coquereli
FBgn0030354	Upf1	60	69.512	ENSPVAG00000003183	UPF1	65	69.512	Pteropus_vampyrus
FBgn0030354	Upf1	82	70.667	ENSPNYG00000016731	-	85	72.187	Pundamilia_nyererei
FBgn0030354	Upf1	81	71.132	ENSPNYG00000003694	upf1	84	72.650	Pundamilia_nyererei
FBgn0030354	Upf1	81	71.369	ENSPNAG00000025614	upf1	85	72.495	Pygocentrus_nattereri
FBgn0030354	Upf1	99	61.462	ENSRNOG00000020134	Upf1	85	70.894	Rattus_norvegicus
FBgn0030354	Upf1	80	67.798	ENSRBIG00000013894	UPF1	80	75.529	Rhinopithecus_bieti
FBgn0030354	Upf1	80	69.650	ENSRROG00000040935	UPF1	82	73.631	Rhinopithecus_roxellana
FBgn0030354	Upf1	73	52.583	YMR080C	NAM7	83	54.969	Saccharomyces_cerevisiae
FBgn0030354	Upf1	80	69.610	ENSSBOG00000023632	UPF1	81	73.579	Saimiri_boliviensis_boliviensis
FBgn0030354	Upf1	80	70.062	ENSSHAG00000010499	UPF1	84	73.467	Sarcophilus_harrisii
FBgn0030354	Upf1	84	69.444	ENSSFOG00015021095	upf1	85	72.611	Scleropages_formosus
FBgn0030354	Upf1	81	71.028	ENSSMAG00000005055	upf1	83	72.252	Scophthalmus_maximus
FBgn0030354	Upf1	81	71.088	ENSSMAG00000021018	-	86	71.459	Scophthalmus_maximus
FBgn0030354	Upf1	81	71.443	ENSSDUG00000013320	upf1	83	72.572	Seriola_dumerili
FBgn0030354	Upf1	81	71.088	ENSSDUG00000009629	-	86	71.459	Seriola_dumerili
FBgn0030354	Upf1	81	71.443	ENSSLDG00000020868	upf1	84	72.572	Seriola_lalandi_dorsalis
FBgn0030354	Upf1	81	71.088	ENSSLDG00000006878	-	86	71.459	Seriola_lalandi_dorsalis
FBgn0030354	Upf1	84	68.359	ENSSPUG00000010538	UPF1	90	71.533	Sphenodon_punctatus
FBgn0030354	Upf1	82	68.378	ENSSPAG00000000003	upf1	84	70.011	Stegastes_partitus
FBgn0030354	Upf1	81	71.162	ENSSPAG00000011521	-	86	71.534	Stegastes_partitus
FBgn0030354	Upf1	84	67.562	ENSSSCG00000039301	UPF1	84	74.548	Sus_scrofa
FBgn0030354	Upf1	77	65.259	ENSTGUG00000001057	UPF1	100	67.057	Taeniopygia_guttata
FBgn0030354	Upf1	88	67.464	ENSTRUG00000000150	upf1	86	72.785	Takifugu_rubripes
FBgn0030354	Upf1	99	61.869	ENSTRUG00000005131	-	86	71.324	Takifugu_rubripes
FBgn0030354	Upf1	84	64.107	ENSTTRG00000011544	UPF1	85	67.358	Tursiops_truncatus
FBgn0030354	Upf1	84	67.273	ENSUAMG00000007093	UPF1	85	70.764	Ursus_americanus
FBgn0030354	Upf1	79	70.992	ENSUMAG00000006652	UPF1	83	76.208	Ursus_maritimus
FBgn0030354	Upf1	84	67.368	ENSVVUG00000007797	UPF1	85	70.868	Vulpes_vulpes
FBgn0030354	Upf1	63	69.036	ENSXETG00000013602	upf1	73	69.162	Xenopus_tropicalis
FBgn0030354	Upf1	81	71.443	ENSXCOG00000015275	-	86	72.572	Xiphophorus_couchianus
FBgn0030354	Upf1	75	73.952	ENSXCOG00000005764	-	84	74.483	Xiphophorus_couchianus
FBgn0030354	Upf1	81	71.547	ENSXMAG00000001703	-	86	72.679	Xiphophorus_maculatus
FBgn0030354	Upf1	81	70.881	ENSXMAG00000002540	-	86	71.429	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	16177138.25452588.	IMP	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0035195	gene silencing by miRNA	16177138.	IMP	Process
GO:0071456	cellular response to hypoxia	18653470.	IMP	Process
GO:0071598	neuronal ribonucleoprotein granule	17178403.	IDA	Component
GO:1990124	messenger ribonucleoprotein complex	17178403.	IDA	Component
GO:2000624	positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	20145706.	IMP	Process