EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0030479 (Gene tree)
Gene ID: 32293
Gene Symbol: Rbp1-like
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4712 bases
Position: chrX:13380166-13384877
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073621	RRM_1	PF00076.22	1.4e-16	1	1
FBpp0308870	RRM_1	PF00076.22	1.4e-16	1	1
FBpp0292970	RRM_1	PF00076.22	2.8e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0339838	-	1456	-	FBpp0308870	158 (aa)	-	M9MS48
FBtr0073790	-	917	-	FBpp0073621	158 (aa)	-	Q9VYD8
FBtr0304001	-	2452	-	FBpp0292970	247 (aa)	-	M9MS48

Gene Model

Click here to download FBgn0030479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0030479's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0030479	Rbp1-like	51	95.062	FBgn0260944	Rbp1	60	95.062

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0030479	Rbp1-like	85	48.148	ENSG00000112081	SRSF3	73	69.565	Homo_sapiens
FBgn0030479	Rbp1-like	57	66.667	ENSG00000115875	SRSF7	61	69.136	Homo_sapiens
FBgn0030479	Rbp1-like	53	67.857	ENSACIG00000016419	-	51	67.949	Amphilophus_citrinellus
FBgn0030479	Rbp1-like	57	62.222	ENSACIG00000009890	srsf7b	62	64.198	Amphilophus_citrinellus
FBgn0030479	Rbp1-like	50	62.025	ENSAOCG00000021499	srsf7b	53	63.380	Amphiprion_ocellaris
FBgn0030479	Rbp1-like	53	66.667	ENSAPEG00000014876	srsf3b	62	67.949	Amphiprion_percula
FBgn0030479	Rbp1-like	53	66.667	ENSAPEG00000013125	-	62	67.949	Amphiprion_percula
FBgn0030479	Rbp1-like	50	62.025	ENSAPEG00000018802	srsf7b	53	63.380	Amphiprion_percula
FBgn0030479	Rbp1-like	53	66.667	ENSATEG00000006193	srsf3b	52	67.949	Anabas_testudineus
FBgn0030479	Rbp1-like	57	66.667	ENSANAG00000019399	SRSF7	59	69.136	Aotus_nancymaae
FBgn0030479	Rbp1-like	54	61.628	ENSANAG00000035091	-	64	66.667	Aotus_nancymaae
FBgn0030479	Rbp1-like	85	48.148	ENSANAG00000033233	-	59	71.233	Aotus_nancymaae
FBgn0030479	Rbp1-like	57	66.667	ENSBTAG00000014891	SRSF7	59	69.136	Bos_taurus
FBgn0030479	Rbp1-like	57	66.667	ENSCJAG00000015185	SRSF7	59	69.136	Callithrix_jacchus
FBgn0030479	Rbp1-like	85	48.148	ENSCJAG00000016062	-	59	71.233	Callithrix_jacchus
FBgn0030479	Rbp1-like	57	66.667	ENSCAFG00020022807	SRSF7	59	69.136	Canis_lupus_dingo
FBgn0030479	Rbp1-like	50	69.620	ENSCHIG00000009659	-	59	71.233	Capra_hircus
FBgn0030479	Rbp1-like	57	66.667	ENSCHIG00000019180	SRSF7	59	69.136	Capra_hircus
FBgn0030479	Rbp1-like	57	66.667	ENSTSYG00000012273	SRSF7	59	69.136	Carlito_syrichta
FBgn0030479	Rbp1-like	85	48.148	ENSTSYG00000025880	SRSF3	59	71.233	Carlito_syrichta
FBgn0030479	Rbp1-like	57	66.667	ENSCPOG00000033318	SRSF7	59	69.136	Cavia_porcellus
FBgn0030479	Rbp1-like	85	48.148	ENSCCAG00000032244	SRSF3	59	71.233	Cebus_capucinus
FBgn0030479	Rbp1-like	85	48.148	ENSCATG00000031850	SRSF3	73	69.565	Cercocebus_atys
FBgn0030479	Rbp1-like	57	66.667	ENSCATG00000031728	SRSF7	59	69.136	Cercocebus_atys
FBgn0030479	Rbp1-like	57	66.667	ENSCLAG00000005235	SRSF7	59	69.136	Chinchilla_lanigera
FBgn0030479	Rbp1-like	50	70.886	ENSCPBG00000018252	-	59	67.901	Chrysemys_picta_bellii
FBgn0030479	Rbp1-like	57	66.667	ENSCPBG00000018247	-	59	69.136	Chrysemys_picta_bellii
FBgn0030479	Rbp1-like	57	66.667	ENSCANG00000040757	SRSF7	59	69.136	Colobus_angolensis_palliatus
FBgn0030479	Rbp1-like	85	48.148	ENSCANG00000039617	SRSF3	59	71.233	Colobus_angolensis_palliatus
FBgn0030479	Rbp1-like	85	48.148	ENSCGRG00001014666	-	59	71.233	Cricetulus_griseus_chok1gshd
FBgn0030479	Rbp1-like	50	72.152	ENSCGRG00000005929	Srsf7	51	75.714	Cricetulus_griseus_crigri
FBgn0030479	Rbp1-like	50	67.089	ENSCGRG00000005286	-	52	68.493	Cricetulus_griseus_crigri
FBgn0030479	Rbp1-like	89	49.286	ENSCSEG00000001311	-	62	67.949	Cynoglossus_semilaevis
FBgn0030479	Rbp1-like	53	66.667	ENSCSEG00000002271	srsf3b	59	67.949	Cynoglossus_semilaevis
FBgn0030479	Rbp1-like	51	74.074	ENSCSEG00000006378	srsf7a	59	68.675	Cynoglossus_semilaevis
FBgn0030479	Rbp1-like	89	47.857	ENSCVAG00000003851	srsf3b	62	67.949	Cyprinodon_variegatus
FBgn0030479	Rbp1-like	53	66.667	ENSCVAG00000009865	-	52	67.949	Cyprinodon_variegatus
FBgn0030479	Rbp1-like	50	68.354	ENSDARG00000101057	srsf7b	53	64.198	Danio_rerio
FBgn0030479	Rbp1-like	52	69.512	ENSDARG00000035325	srsf7a	81	76.271	Danio_rerio
FBgn0030479	Rbp1-like	53	69.880	ENSDARG00000100815	srsf3a	57	71.429	Danio_rerio
FBgn0030479	Rbp1-like	53	66.667	ENSDARG00000059360	srsf3b	63	67.949	Danio_rerio
FBgn0030479	Rbp1-like	53	69.880	ENSDARG00000025397	srsf3a	57	71.429	Danio_rerio
FBgn0030479	Rbp1-like	57	66.667	ENSDNOG00000007821	SRSF7	59	69.136	Dasypus_novemcinctus
FBgn0030479	Rbp1-like	57	66.667	ENSEASG00005005547	SRSF7	59	69.136	Equus_asinus_asinus
FBgn0030479	Rbp1-like	50	69.620	ENSELUG00000018155	srsf7b	51	72.857	Esox_lucius
FBgn0030479	Rbp1-like	51	70.000	ENSELUG00000016922	srsf7a	50	72.464	Esox_lucius
FBgn0030479	Rbp1-like	57	66.667	ENSFDAG00000016030	-	59	69.136	Fukomys_damarensis
FBgn0030479	Rbp1-like	53	66.667	ENSFHEG00000005368	srsf3b	62	67.949	Fundulus_heteroclitus
FBgn0030479	Rbp1-like	53	66.667	ENSFHEG00000014610	-	62	67.949	Fundulus_heteroclitus
FBgn0030479	Rbp1-like	53	66.667	ENSGMOG00000008043	SRSF3	55	66.667	Gadus_morhua
FBgn0030479	Rbp1-like	50	69.620	ENSGMOG00000000944	-	68	71.233	Gadus_morhua
FBgn0030479	Rbp1-like	77	52.800	ENSGALG00000033120	SRSF7	59	67.901	Gallus_gallus
FBgn0030479	Rbp1-like	53	66.667	ENSGAFG00000010130	-	62	67.949	Gambusia_affinis
FBgn0030479	Rbp1-like	53	66.667	ENSGAFG00000021603	srsf3b	64	67.949	Gambusia_affinis
FBgn0030479	Rbp1-like	55	63.218	ENSGACG00000001473	-	66	64.198	Gasterosteus_aculeatus
FBgn0030479	Rbp1-like	57	65.556	ENSGAGG00000016294	-	59	67.901	Gopherus_agassizii
FBgn0030479	Rbp1-like	50	70.886	ENSGAGG00000003553	SRSF7	59	67.901	Gopherus_agassizii
FBgn0030479	Rbp1-like	57	66.667	ENSGGOG00000014620	SRSF7	59	69.136	Gorilla_gorilla
FBgn0030479	Rbp1-like	85	48.148	ENSGGOG00000017186	SRSF3	59	71.233	Gorilla_gorilla
FBgn0030479	Rbp1-like	53	66.667	ENSHBUG00000003073	srsf3b	62	67.949	Haplochromis_burtoni
FBgn0030479	Rbp1-like	57	66.667	ENSHGLG00100006124	-	59	69.136	Heterocephalus_glaber_male
FBgn0030479	Rbp1-like	53	67.857	ENSHCOG00000000149	srsf3b	53	69.231	Hippocampus_comes
FBgn0030479	Rbp1-like	53	66.667	ENSIPUG00000017382	srsf3	61	67.949	Ictalurus_punctatus
FBgn0030479	Rbp1-like	57	66.667	ENSSTOG00000004389	SRSF7	59	69.136	Ictidomys_tridecemlineatus
FBgn0030479	Rbp1-like	53	65.476	ENSLBEG00000013364	srsf3b	67	66.667	Labrus_bergylta
FBgn0030479	Rbp1-like	53	66.265	ENSLBEG00000000877	-	61	67.532	Labrus_bergylta
FBgn0030479	Rbp1-like	91	50.000	ENSLAFG00000005666	SRSF7	51	69.136	Loxodonta_africana
FBgn0030479	Rbp1-like	85	48.148	ENSMFAG00000002707	SRSF3	73	69.565	Macaca_fascicularis
FBgn0030479	Rbp1-like	57	66.667	ENSMFAG00000001980	SRSF7	59	69.136	Macaca_fascicularis
FBgn0030479	Rbp1-like	85	48.148	ENSMMUG00000014306	SRSF3	73	69.565	Macaca_mulatta
FBgn0030479	Rbp1-like	85	48.148	ENSMNEG00000038420	SRSF3	73	69.565	Macaca_nemestrina
FBgn0030479	Rbp1-like	57	66.667	ENSMLEG00000038852	SRSF7	59	69.136	Mandrillus_leucophaeus
FBgn0030479	Rbp1-like	53	66.667	ENSMAMG00000023637	-	63	67.949	Mastacembelus_armatus
FBgn0030479	Rbp1-like	53	66.667	ENSMZEG00005016010	-	50	67.949	Maylandia_zebra
FBgn0030479	Rbp1-like	85	48.148	ENSMICG00000029154	-	59	71.233	Microcebus_murinus
FBgn0030479	Rbp1-like	50	69.620	ENSMOCG00000014206	-	50	71.233	Microtus_ochrogaster
FBgn0030479	Rbp1-like	53	66.667	ENSMALG00000021269	-	63	67.949	Monopterus_albus
FBgn0030479	Rbp1-like	85	48.148	ENSMUSG00000071172	Srsf3	59	71.233	Mus_musculus
FBgn0030479	Rbp1-like	57	66.667	ENSMUSG00000024097	Srsf7	59	69.136	Mus_musculus
FBgn0030479	Rbp1-like	79	56.000	ENSNBRG00000006601	srsf7a	54	49.600	Neolamprologus_brichardi
FBgn0030479	Rbp1-like	85	48.148	ENSNLEG00000010737	SRSF3	73	69.565	Nomascus_leucogenys
FBgn0030479	Rbp1-like	57	66.667	ENSNLEG00000016349	SRSF7	59	69.136	Nomascus_leucogenys
FBgn0030479	Rbp1-like	55	65.517	ENSORLG00020011157	-	61	67.949	Oryzias_latipes_hni
FBgn0030479	Rbp1-like	53	66.667	ENSOMEG00000014893	srsf3b	52	67.949	Oryzias_melastigma
FBgn0030479	Rbp1-like	85	48.148	ENSPPAG00000037453	SRSF3	73	69.565	Pan_paniscus
FBgn0030479	Rbp1-like	85	48.148	ENSPTRG00000018106	SRSF3	73	69.565	Pan_troglodytes
FBgn0030479	Rbp1-like	85	48.148	ENSPANG00000018768	-	73	69.565	Papio_anubis
FBgn0030479	Rbp1-like	57	64.444	ENSPKIG00000022669	SRSF7	55	66.667	Paramormyrops_kingsleyae
FBgn0030479	Rbp1-like	53	66.667	ENSPMGG00000010209	-	50	67.949	Periophthalmus_magnuspinnatus
FBgn0030479	Rbp1-like	51	74.074	ENSPMGG00000021890	srsf7a	52	74.648	Periophthalmus_magnuspinnatus
FBgn0030479	Rbp1-like	53	67.857	ENSPMGG00000004040	srsf3b	62	67.949	Periophthalmus_magnuspinnatus
FBgn0030479	Rbp1-like	50	69.620	ENSPCIG00000020726	-	60	65.432	Phascolarctos_cinereus
FBgn0030479	Rbp1-like	57	66.667	ENSPCIG00000020694	-	59	69.136	Phascolarctos_cinereus
FBgn0030479	Rbp1-like	53	66.667	ENSPFOG00000000552	srsf3b	62	67.949	Poecilia_formosa
FBgn0030479	Rbp1-like	53	66.667	ENSPFOG00000018005	-	62	67.949	Poecilia_formosa
FBgn0030479	Rbp1-like	53	66.667	ENSPLAG00000003715	srsf3b	62	67.949	Poecilia_latipinna
FBgn0030479	Rbp1-like	53	66.667	ENSPMEG00000012960	-	62	67.949	Poecilia_mexicana
FBgn0030479	Rbp1-like	53	66.667	ENSPMEG00000001983	srsf3b	62	67.949	Poecilia_mexicana
FBgn0030479	Rbp1-like	53	66.667	ENSPREG00000004340	srsf3b	62	67.949	Poecilia_reticulata
FBgn0030479	Rbp1-like	53	67.857	ENSPREG00000002610	-	51	67.949	Poecilia_reticulata
FBgn0030479	Rbp1-like	51	74.074	ENSPREG00000020685	srsf7a	56	74.648	Poecilia_reticulata
FBgn0030479	Rbp1-like	50	69.620	ENSPPYG00000016548	-	59	71.233	Pongo_abelii
FBgn0030479	Rbp1-like	85	48.148	ENSPCOG00000026280	SRSF3	59	71.233	Propithecus_coquereli
FBgn0030479	Rbp1-like	53	67.857	ENSPNYG00000013747	-	50	69.231	Pundamilia_nyererei
FBgn0030479	Rbp1-like	53	66.667	ENSPNYG00000007657	srsf3b	58	67.949	Pundamilia_nyererei
FBgn0030479	Rbp1-like	94	50.676	ENSPNAG00000012262	srsf3a	61	70.513	Pygocentrus_nattereri
FBgn0030479	Rbp1-like	85	48.148	ENSRNOG00000000520	Srsf3	59	71.233	Rattus_norvegicus
FBgn0030479	Rbp1-like	85	48.148	ENSRBIG00000036836	SRSF3	59	71.233	Rhinopithecus_bieti
FBgn0030479	Rbp1-like	57	66.667	ENSRROG00000005080	SRSF7	59	69.136	Rhinopithecus_roxellana
FBgn0030479	Rbp1-like	85	48.148	ENSRROG00000044486	SRSF3	59	71.233	Rhinopithecus_roxellana
FBgn0030479	Rbp1-like	57	66.667	ENSSBOG00000025074	SRSF7	59	69.136	Saimiri_boliviensis_boliviensis
FBgn0030479	Rbp1-like	85	48.148	ENSSBOG00000022192	SRSF3	59	71.233	Saimiri_boliviensis_boliviensis
FBgn0030479	Rbp1-like	50	72.152	ENSSHAG00000015970	-	50	75.714	Sarcophilus_harrisii
FBgn0030479	Rbp1-like	53	65.476	ENSSMAG00000020812	-	62	66.667	Scophthalmus_maximus
FBgn0030479	Rbp1-like	53	66.667	ENSSDUG00000009243	srsf3b	62	67.949	Seriola_dumerili
FBgn0030479	Rbp1-like	50	69.620	ENSSDUG00000021338	srsf7b	57	65.432	Seriola_dumerili
FBgn0030479	Rbp1-like	53	66.667	ENSSLDG00000022631	srsf3b	62	67.949	Seriola_lalandi_dorsalis
FBgn0030479	Rbp1-like	51	74.074	ENSSPAG00000022192	srsf7a	57	74.648	Stegastes_partitus
FBgn0030479	Rbp1-like	50	72.152	ENSSPAG00000017204	srsf7b	57	67.901	Stegastes_partitus
FBgn0030479	Rbp1-like	53	66.667	ENSSPAG00000017902	-	51	67.949	Stegastes_partitus
FBgn0030479	Rbp1-like	57	66.667	ENSSSCG00000008484	SRSF7	59	69.136	Sus_scrofa
FBgn0030479	Rbp1-like	54	66.279	ENSTRUG00000023965	-	64	67.500	Takifugu_rubripes
FBgn0030479	Rbp1-like	57	66.667	ENSUAMG00000025051	-	59	69.136	Ursus_americanus
FBgn0030479	Rbp1-like	57	66.667	ENSVVUG00000018767	-	59	69.136	Vulpes_vulpes
FBgn0030479	Rbp1-like	51	74.074	ENSXCOG00000009381	srsf7a	56	74.648	Xiphophorus_couchianus
FBgn0030479	Rbp1-like	53	66.667	ENSXMAG00000001097	srsf3b	62	67.949	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008380	RNA splicing	15961996.	IMP	Process
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component