EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0030506 (Gene tree)
Gene ID: 32322
Gene Symbol: Lig4
Alias: -
Full Name: Ligase4
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 3228 bases
Position: chrX:13664584-13667811
Accession: FBgn0030506
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073678	RNA_ligase	PF09414.10	7.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0073847	-	3040	-	FBpp0073678	918 (aa)	-	Q8MS06

Gene Model

Click here to download FBgn0030506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0030506's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0030506	Lig4	91	31.389	ENSG00000174405	LIG4	90	31.389	Homo_sapiens
FBgn0030506	Lig4	93	30.769	ENSAPOG00000000866	lig4	92	30.769	Acanthochromis_polyacanthus
FBgn0030506	Lig4	90	31.095	ENSAMEG00000019685	LIG4	88	31.095	Ailuropoda_melanoleuca
FBgn0030506	Lig4	93	30.917	ENSACIG00000018309	lig4	92	30.917	Amphilophus_citrinellus
FBgn0030506	Lig4	93	30.804	ENSAOCG00000011768	lig4	92	30.804	Amphiprion_ocellaris
FBgn0030506	Lig4	93	30.804	ENSAPEG00000017815	lig4	92	30.804	Amphiprion_percula
FBgn0030506	Lig4	85	32.832	ENSATEG00000005583	lig4	83	32.707	Anabas_testudineus
FBgn0030506	Lig4	83	33.205	ENSAPLG00000001673	LIG4	84	33.205	Anas_platyrhynchos
FBgn0030506	Lig4	91	31.257	ENSACAG00000014566	LIG4	89	31.257	Anolis_carolinensis
FBgn0030506	Lig4	90	31.213	ENSANAG00000012446	LIG4	89	31.213	Aotus_nancymaae
FBgn0030506	Lig4	93	30.934	ENSACLG00000027051	lig4	93	30.934	Astatotilapia_calliptera
FBgn0030506	Lig4	91	30.869	ENSAMXG00000008192	lig4	84	30.869	Astyanax_mexicanus
FBgn0030506	Lig4	91	31.382	ENSBTAG00000015868	LIG4	94	31.287	Bos_taurus
FBgn0030506	Lig4	90	31.301	ENSCJAG00000014689	LIG4	89	31.301	Callithrix_jacchus
FBgn0030506	Lig4	91	31.395	ENSCAFG00000006031	LIG4	89	31.395	Canis_familiaris
FBgn0030506	Lig4	91	31.395	ENSCAFG00020021230	LIG4	89	31.395	Canis_lupus_dingo
FBgn0030506	Lig4	91	30.409	ENSCHIG00000001019	LIG4	89	30.409	Capra_hircus
FBgn0030506	Lig4	91	31.647	ENSCAPG00000006284	LIG4	90	31.647	Cavia_aperea
FBgn0030506	Lig4	91	31.653	ENSCPOG00000014266	LIG4	89	31.653	Cavia_porcellus
FBgn0030506	Lig4	90	31.641	ENSCCAG00000019971	LIG4	89	31.641	Cebus_capucinus
FBgn0030506	Lig4	91	30.877	ENSCATG00000021075	LIG4	89	30.877	Cercocebus_atys
FBgn0030506	Lig4	91	31.733	ENSCLAG00000003376	LIG4	89	31.733	Chinchilla_lanigera
FBgn0030506	Lig4	90	31.213	ENSCSAG00000000211	LIG4	89	31.213	Chlorocebus_sabaeus
FBgn0030506	Lig4	90	32.742	ENSCPBG00000023291	LIG4	88	32.742	Chrysemys_picta_bellii
FBgn0030506	Lig4	70	31.071	ENSCING00000009536	-	96	31.071	Ciona_intestinalis
FBgn0030506	Lig4	91	31.111	ENSCANG00000005805	LIG4	89	31.111	Colobus_angolensis_palliatus
FBgn0030506	Lig4	92	30.971	ENSCGRG00001012072	Lig4	91	30.971	Cricetulus_griseus_chok1gshd
FBgn0030506	Lig4	92	30.971	ENSCGRG00000013417	Lig4	91	30.971	Cricetulus_griseus_crigri
FBgn0030506	Lig4	91	30.832	ENSCSEG00000013905	lig4	88	30.832	Cynoglossus_semilaevis
FBgn0030506	Lig4	85	32.246	ENSCVAG00000007896	lig4	84	32.246	Cyprinodon_variegatus
FBgn0030506	Lig4	91	31.887	ENSDARG00000060620	lig4	89	31.887	Danio_rerio
FBgn0030506	Lig4	91	30.607	ENSDNOG00000000513	LIG4	89	30.607	Dasypus_novemcinctus
FBgn0030506	Lig4	91	32.277	ENSDORG00000027303	Lig4	89	32.277	Dipodomys_ordii
FBgn0030506	Lig4	90	30.697	ENSETEG00000015563	LIG4	89	30.697	Echinops_telfairi
FBgn0030506	Lig4	91	31.039	ENSEASG00005022073	LIG4	89	31.039	Equus_asinus_asinus
FBgn0030506	Lig4	91	31.272	ENSECAG00000003257	LIG4	89	31.272	Equus_caballus
FBgn0030506	Lig4	92	30.540	ENSELUG00000006787	lig4	90	30.664	Esox_lucius
FBgn0030506	Lig4	91	31.412	ENSFCAG00000031985	LIG4	89	31.412	Felis_catus
FBgn0030506	Lig4	86	32.099	ENSFALG00000004214	LIG4	93	32.099	Ficedula_albicollis
FBgn0030506	Lig4	91	32.515	ENSFDAG00000008973	LIG4	89	32.515	Fukomys_damarensis
FBgn0030506	Lig4	85	31.407	ENSFHEG00000007398	lig4	78	30.788	Fundulus_heteroclitus
FBgn0030506	Lig4	85	32.258	ENSGMOG00000012843	lig4	97	32.010	Gadus_morhua
FBgn0030506	Lig4	87	31.985	ENSGALG00000016854	LIG4	85	31.985	Gallus_gallus
FBgn0030506	Lig4	86	31.722	ENSGAFG00000019779	lig4	86	31.257	Gambusia_affinis
FBgn0030506	Lig4	85	31.995	ENSGACG00000014135	lig4	86	31.840	Gasterosteus_aculeatus
FBgn0030506	Lig4	91	31.272	ENSGGOG00000027771	LIG4	90	31.272	Gorilla_gorilla
FBgn0030506	Lig4	93	30.709	ENSHBUG00000006245	lig4	93	30.821	Haplochromis_burtoni
FBgn0030506	Lig4	91	32.281	ENSHGLG00000000718	LIG4	89	32.281	Heterocephalus_glaber_female
FBgn0030506	Lig4	91	32.281	ENSHGLG00100003265	LIG4	89	32.281	Heterocephalus_glaber_male
FBgn0030506	Lig4	93	31.864	ENSHCOG00000012010	lig4	92	31.864	Hippocampus_comes
FBgn0030506	Lig4	95	31.348	ENSIPUG00000013748	lig4	91	31.348	Ictalurus_punctatus
FBgn0030506	Lig4	90	31.250	ENSSTOG00000024303	LIG4	88	31.250	Ictidomys_tridecemlineatus
FBgn0030506	Lig4	91	31.972	ENSJJAG00000006750	Lig4	89	31.818	Jaculus_jaculus
FBgn0030506	Lig4	88	31.879	ENSKMAG00000001149	lig4	86	31.879	Kryptolebias_marmoratus
FBgn0030506	Lig4	85	31.095	ENSLBEG00000014578	lig4	93	31.095	Labrus_bergylta
FBgn0030506	Lig4	92	31.250	ENSLACG00000003282	LIG4	90	31.250	Latimeria_chalumnae
FBgn0030506	Lig4	91	31.475	ENSLOCG00000008901	lig4	88	31.475	Lepisosteus_oculatus
FBgn0030506	Lig4	91	31.616	ENSLAFG00000031152	LIG4	89	31.616	Loxodonta_africana
FBgn0030506	Lig4	91	30.994	ENSMFAG00000037235	LIG4	89	30.994	Macaca_fascicularis
FBgn0030506	Lig4	91	30.994	ENSMMUG00000008874	LIG4	89	30.994	Macaca_mulatta
FBgn0030506	Lig4	91	30.994	ENSMNEG00000023575	LIG4	89	30.994	Macaca_nemestrina
FBgn0030506	Lig4	90	30.860	ENSMLEG00000026720	LIG4	89	30.860	Mandrillus_leucophaeus
FBgn0030506	Lig4	93	31.674	ENSMAMG00000008472	lig4	92	31.674	Mastacembelus_armatus
FBgn0030506	Lig4	93	30.934	ENSMZEG00005001855	lig4	93	30.934	Maylandia_zebra
FBgn0030506	Lig4	87	32.681	ENSMGAG00000015532	LIG4	85	32.681	Meleagris_gallopavo
FBgn0030506	Lig4	91	30.617	ENSMOCG00000019000	Lig4	89	30.617	Microtus_ochrogaster
FBgn0030506	Lig4	88	31.470	ENSMMOG00000004390	lig4	86	31.470	Mola_mola
FBgn0030506	Lig4	91	31.030	ENSMODG00000025064	LIG4	89	31.308	Monodelphis_domestica
FBgn0030506	Lig4	99	30.150	ENSMALG00000008555	lig4	98	30.150	Monopterus_albus
FBgn0030506	Lig4	91	31.199	MGP_CAROLIEiJ_G0030809	Lig4	89	31.199	Mus_caroli
FBgn0030506	Lig4	91	31.548	ENSMUSG00000049717	Lig4	89	31.548	Mus_musculus
FBgn0030506	Lig4	91	31.352	MGP_PahariEiJ_G0021270	Lig4	89	31.352	Mus_pahari
FBgn0030506	Lig4	91	31.665	MGP_SPRETEiJ_G0031917	Lig4	89	31.665	Mus_spretus
FBgn0030506	Lig4	91	31.529	ENSMPUG00000018675	LIG4	89	31.529	Mustela_putorius_furo
FBgn0030506	Lig4	91	31.382	ENSMLUG00000001267	LIG4	89	31.382	Myotis_lucifugus
FBgn0030506	Lig4	92	32.180	ENSNGAG00000013258	Lig4	90	32.180	Nannospalax_galili
FBgn0030506	Lig4	93	30.891	ENSNBRG00000021252	lig4	93	30.891	Neolamprologus_brichardi
FBgn0030506	Lig4	91	31.228	ENSNLEG00000007888	LIG4	89	31.228	Nomascus_leucogenys
FBgn0030506	Lig4	91	30.805	ENSOPRG00000005765	LIG4	89	30.805	Ochotona_princeps
FBgn0030506	Lig4	91	32.360	ENSODEG00000019683	LIG4	89	32.360	Octodon_degus
FBgn0030506	Lig4	93	30.926	ENSONIG00000011969	lig4	91	31.038	Oreochromis_niloticus
FBgn0030506	Lig4	91	30.950	ENSOCUG00000015734	LIG4	89	30.950	Oryctolagus_cuniculus
FBgn0030506	Lig4	93	30.631	ENSORLG00000004041	lig4	92	30.968	Oryzias_latipes
FBgn0030506	Lig4	93	30.665	ENSORLG00020019607	lig4	92	30.891	Oryzias_latipes_hni
FBgn0030506	Lig4	93	30.891	ENSORLG00015017754	lig4	92	31.116	Oryzias_latipes_hsok
FBgn0030506	Lig4	75	32.482	ENSOMEG00000003459	lig4	97	32.482	Oryzias_melastigma
FBgn0030506	Lig4	90	31.759	ENSOGAG00000032120	LIG4	88	31.759	Otolemur_garnettii
FBgn0030506	Lig4	83	30.701	ENSOARG00000005590	LIG4	98	30.701	Ovis_aries
FBgn0030506	Lig4	91	30.994	ENSPPAG00000032998	LIG4	90	30.994	Pan_paniscus
FBgn0030506	Lig4	91	31.294	ENSPPRG00000017804	LIG4	89	31.294	Panthera_pardus
FBgn0030506	Lig4	91	31.412	ENSPTIG00000010051	LIG4	89	31.412	Panthera_tigris_altaica
FBgn0030506	Lig4	91	31.111	ENSPTRG00000006025	LIG4	90	31.111	Pan_troglodytes
FBgn0030506	Lig4	91	30.877	ENSPANG00000007562	LIG4	89	30.877	Papio_anubis
FBgn0030506	Lig4	91	30.624	ENSPKIG00000011645	lig4	87	30.624	Paramormyrops_kingsleyae
FBgn0030506	Lig4	90	31.910	ENSPSIG00000001504	LIG4	88	31.910	Pelodiscus_sinensis
FBgn0030506	Lig4	91	31.518	ENSPEMG00000000076	Lig4	89	31.518	Peromyscus_maniculatus_bairdii
FBgn0030506	Lig4	91	31.382	ENSPCIG00000021882	LIG4	89	31.382	Phascolarctos_cinereus
FBgn0030506	Lig4	86	31.475	ENSPFOG00000000797	lig4	89	30.978	Poecilia_formosa
FBgn0030506	Lig4	86	31.475	ENSPLAG00000001196	lig4	89	30.978	Poecilia_latipinna
FBgn0030506	Lig4	86	31.475	ENSPMEG00000021353	lig4	89	30.978	Poecilia_mexicana
FBgn0030506	Lig4	86	31.475	ENSPREG00000007323	lig4	89	31.140	Poecilia_reticulata
FBgn0030506	Lig4	91	30.994	ENSPPYG00000005540	LIG4	89	30.994	Pongo_abelii
FBgn0030506	Lig4	91	31.315	ENSPVAG00000016403	LIG4	89	31.315	Pteropus_vampyrus
FBgn0030506	Lig4	93	30.934	ENSPNYG00000009660	lig4	93	30.821	Pundamilia_nyererei
FBgn0030506	Lig4	91	31.455	ENSPNAG00000028056	lig4	89	31.455	Pygocentrus_nattereri
FBgn0030506	Lig4	91	31.455	ENSPNAG00000028069	LIG4	89	31.455	Pygocentrus_nattereri
FBgn0030506	Lig4	91	30.886	ENSRNOG00000014605	Lig4	89	30.886	Rattus_norvegicus
FBgn0030506	Lig4	91	30.526	ENSRBIG00000039962	LIG4	89	30.526	Rhinopithecus_bieti
FBgn0030506	Lig4	91	31.111	ENSRROG00000006040	LIG4	89	31.111	Rhinopithecus_roxellana
FBgn0030506	Lig4	90	31.059	ENSSBOG00000019029	LIG4	89	31.059	Saimiri_boliviensis_boliviensis
FBgn0030506	Lig4	90	30.271	ENSSHAG00000009525	LIG4	88	30.506	Sarcophilus_harrisii
FBgn0030506	Lig4	91	30.841	ENSSFOG00015012835	lig4	89	30.841	Scleropages_formosus
FBgn0030506	Lig4	85	31.360	ENSSMAG00000011267	lig4	85	31.360	Scophthalmus_maximus
FBgn0030506	Lig4	93	30.430	ENSSDUG00000010343	lig4	92	30.430	Seriola_dumerili
FBgn0030506	Lig4	92	33.103	ENSSARG00000006573	LIG4	90	33.103	Sorex_araneus
FBgn0030506	Lig4	79	33.066	ENSSPUG00000002444	LIG4	85	33.066	Sphenodon_punctatus
FBgn0030506	Lig4	91	31.294	ENSSPAG00000001609	lig4	89	31.176	Stegastes_partitus
FBgn0030506	Lig4	90	31.449	ENSSSCG00000009540	LIG4	89	31.449	Sus_scrofa
FBgn0030506	Lig4	91	31.653	ENSTGUG00000010795	LIG4	89	31.653	Taeniopygia_guttata
FBgn0030506	Lig4	85	31.995	ENSTRUG00000009984	lig4	83	31.995	Takifugu_rubripes
FBgn0030506	Lig4	85	32.581	ENSTNIG00000010348	lig4	84	32.456	Tetraodon_nigroviridis
FBgn0030506	Lig4	91	31.765	ENSTBEG00000017741	LIG4	89	31.765	Tupaia_belangeri
FBgn0030506	Lig4	91	30.994	ENSTTRG00000012660	LIG4	89	30.994	Tursiops_truncatus
FBgn0030506	Lig4	90	31.213	ENSUAMG00000003773	LIG4	89	31.213	Ursus_americanus
FBgn0030506	Lig4	86	32.214	ENSXETG00000002654	lig4	84	32.214	Xenopus_tropicalis
FBgn0030506	Lig4	90	30.378	ENSXCOG00000017401	lig4	89	30.353	Xiphophorus_couchianus
FBgn0030506	Lig4	90	30.851	ENSXMAG00000015142	lig4	89	30.824	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000723	telomere maintenance	15296751.	IGI	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003910	DNA ligase (ATP) activity	14704177.	ISS	Function
GO:0005515	protein binding	14704177.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex	21873635.	IBA	Component
GO:0006297	nucleotide-excision repair, DNA gap filling	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	17660539.19064913.	IMP	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0010212	response to ionizing radiation	14704177.	IMP	Process
GO:0032807	DNA ligase IV complex	21873635.	IBA	Component
GO:0051103	DNA ligation involved in DNA repair	-	IEA	Process
GO:0071897	DNA biosynthetic process	-	IEA	Process