EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0030943 (Gene tree)
Gene ID: 32851
Gene Symbol: CG6540
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1308 bases
Position: chrX:18648182-18649489
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074372	Nup35_RRM	PF05172.13	2.1e-26	1	1
FBpp0074372	Nup35_RRM_2	PF14605.6	2.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0074601	-	1249	-	FBpp0074372	331 (aa)	-	Q9VWS2

Gene Model

Click here to download FBgn0030943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0030943's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0030943	CG6540	69	31.915	ENSACIG00000023984	nup35	90	32.340	Amphilophus_citrinellus
FBgn0030943	CG6540	99	30.240	ENSACLG00000013918	nup35	98	31.138	Astatotilapia_calliptera
FBgn0030943	CG6540	55	31.795	ENSCCAG00000025009	NUP35	95	31.795	Cebus_capucinus
FBgn0030943	CG6540	99	30.056	ENSCING00000009659	-	98	30.056	Ciona_intestinalis
FBgn0030943	CG6540	99	31.728	ENSCSAVG00000007467	-	99	31.728	Ciona_savignyi
FBgn0030943	CG6540	55	31.282	ENSCANG00000030785	NUP35	95	31.282	Colobus_angolensis_palliatus
FBgn0030943	CG6540	99	30.240	ENSFHEG00000010229	nup35	98	30.838	Fundulus_heteroclitus
FBgn0030943	CG6540	55	31.282	ENSGGOG00000009919	NUP35	92	31.282	Gorilla_gorilla
FBgn0030943	CG6540	55	31.282	ENSMLEG00000035422	NUP35	95	31.282	Mandrillus_leucophaeus
FBgn0030943	CG6540	89	30.303	ENSMZEG00005020619	nup35	91	31.313	Maylandia_zebra
FBgn0030943	CG6540	99	30.723	ENSMALG00000020187	nup35	98	30.723	Monopterus_albus
FBgn0030943	CG6540	99	30.149	ENSNBRG00000020466	nup35	96	30.448	Neolamprologus_brichardi
FBgn0030943	CG6540	55	31.282	ENSNLEG00000035026	NUP35	94	31.282	Nomascus_leucogenys
FBgn0030943	CG6540	55	31.282	ENSPPAG00000036316	NUP35	92	31.282	Pan_paniscus
FBgn0030943	CG6540	55	31.282	ENSPTRG00000012711	NUP35	92	31.282	Pan_troglodytes
FBgn0030943	CG6540	99	30.060	ENSPMEG00000010552	nup35	98	30.357	Poecilia_mexicana
FBgn0030943	CG6540	99	30.838	ENSPNYG00000012486	nup35	94	30.838	Pundamilia_nyererei
FBgn0030943	CG6540	55	31.282	ENSRBIG00000039427	NUP35	95	31.282	Rhinopithecus_bieti
FBgn0030943	CG6540	55	31.282	ENSRROG00000026525	NUP35	95	31.282	Rhinopithecus_roxellana
FBgn0030943	CG6540	55	31.795	ENSSBOG00000018676	NUP35	95	31.795	Saimiri_boliviensis_boliviensis
FBgn0030943	CG6540	50	34.524	ENSSDUG00000013118	nup35	56	35.119	Seriola_dumerili
FBgn0030943	CG6540	50	32.022	ENSUAMG00000018696	-	84	32.022	Ursus_americanus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0005543	phospholipid binding	21873635.	IBA	Function
GO:0006607	NLS-bearing protein import into nucleus	21873635.	IBA	Process
GO:0006999	nuclear pore organization	21873635.	IBA	Process
GO:0006999	nuclear pore organization	-	ISS	Process
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISS	Function
GO:0031965	nuclear membrane	-	IEA	Component
GO:0044613	nuclear pore central transport channel	21873635.	IBA	Component
GO:0044613	nuclear pore central transport channel	-	ISS	Component
GO:0044615	nuclear pore nuclear basket	21873635.	IBA	Component