EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0031266 (Gene tree)
Gene ID: 33235
Gene Symbol: Sf3b1
Alias: -
Full Name: Splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 4568 bases
Position: chr2L:568340-572907
Accession: FBgn0031266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0077728	SF3b1	PF08920.10	5.2e-43	1	1
FBpp0304617	SF3b1	PF08920.10	5.2e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078068	-	4155	-	FBpp0077728	1340 (aa)	-	Q9VPR5
FBtr0332340	-	4346	-	FBpp0304617	1340 (aa)	-	Q4V5E9

Gene Model

Click here to download FBgn0031266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0031266's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0031266	Sf3b1	100	76.618	ENSG00000115524	SF3B1	94	92.035	Homo_sapiens
FBgn0031266	Sf3b1	100	75.806	ENSAPOG00000011894	sf3b1	100	75.806	Acanthochromis_polyacanthus
FBgn0031266	Sf3b1	99	76.701	ENSAMEG00000013809	SF3B1	99	76.701	Ailuropoda_melanoleuca
FBgn0031266	Sf3b1	100	76.250	ENSACIG00000020910	sf3b1	97	76.250	Amphilophus_citrinellus
FBgn0031266	Sf3b1	100	75.806	ENSAOCG00000004478	sf3b1	100	75.806	Amphiprion_ocellaris
FBgn0031266	Sf3b1	100	75.806	ENSAPEG00000012937	sf3b1	100	75.806	Amphiprion_percula
FBgn0031266	Sf3b1	100	75.880	ENSATEG00000020435	sf3b1	100	75.880	Anabas_testudineus
FBgn0031266	Sf3b1	99	76.723	ENSAPLG00000003993	SF3B1	99	76.723	Anas_platyrhynchos
FBgn0031266	Sf3b1	100	76.453	ENSACAG00000009612	SF3B1	100	76.453	Anolis_carolinensis
FBgn0031266	Sf3b1	100	76.618	ENSANAG00000021577	SF3B1	100	80.000	Aotus_nancymaae
FBgn0031266	Sf3b1	100	76.026	ENSACLG00000023470	sf3b1	100	76.026	Astatotilapia_calliptera
FBgn0031266	Sf3b1	100	75.733	ENSAMXG00000002219	sf3b1	100	75.733	Astyanax_mexicanus
FBgn0031266	Sf3b1	100	76.618	ENSBTAG00000008915	SF3B1	100	76.618	Bos_taurus
FBgn0031266	Sf3b1	97	67.543	WBGene00011605	sftb-1	97	67.494	Caenorhabditis_elegans
FBgn0031266	Sf3b1	100	76.618	ENSCJAG00000003902	SF3B1	100	76.618	Callithrix_jacchus
FBgn0031266	Sf3b1	100	76.618	ENSCAFG00000010826	SF3B1	100	76.618	Canis_familiaris
FBgn0031266	Sf3b1	100	76.618	ENSCAFG00020004750	SF3B1	100	76.618	Canis_lupus_dingo
FBgn0031266	Sf3b1	100	76.618	ENSCHIG00000015226	SF3B1	100	76.618	Capra_hircus
FBgn0031266	Sf3b1	100	76.544	ENSTSYG00000009214	SF3B1	100	76.544	Carlito_syrichta
FBgn0031266	Sf3b1	99	76.696	ENSCAPG00000006547	SF3B1	99	76.696	Cavia_aperea
FBgn0031266	Sf3b1	99	76.741	ENSCPOG00000009353	SF3B1	100	76.741	Cavia_porcellus
FBgn0031266	Sf3b1	100	76.618	ENSCCAG00000020506	SF3B1	100	76.618	Cebus_capucinus
FBgn0031266	Sf3b1	100	76.618	ENSCATG00000035735	SF3B1	100	76.618	Cercocebus_atys
FBgn0031266	Sf3b1	99	76.758	ENSCLAG00000014767	SF3B1	99	76.758	Chinchilla_lanigera
FBgn0031266	Sf3b1	100	76.618	ENSCSAG00000011505	SF3B1	100	76.618	Chlorocebus_sabaeus
FBgn0031266	Sf3b1	77	80.989	ENSCHOG00000009860	SF3B1	76	80.989	Choloepus_hoffmanni
FBgn0031266	Sf3b1	100	76.583	ENSCPBG00000021902	SF3B1	99	80.000	Chrysemys_picta_bellii
FBgn0031266	Sf3b1	67	73.804	ENSCING00000002558	-	98	73.804	Ciona_intestinalis
FBgn0031266	Sf3b1	99	75.147	ENSCSAVG00000002559	-	99	75.147	Ciona_savignyi
FBgn0031266	Sf3b1	100	76.618	ENSCANG00000029415	SF3B1	100	76.618	Colobus_angolensis_palliatus
FBgn0031266	Sf3b1	100	76.618	ENSCGRG00001016990	Sf3b1	100	76.618	Cricetulus_griseus_chok1gshd
FBgn0031266	Sf3b1	100	76.618	ENSCGRG00000005301	Sf3b1	100	76.618	Cricetulus_griseus_crigri
FBgn0031266	Sf3b1	100	72.721	ENSCSEG00000003860	sf3b1	100	72.721	Cynoglossus_semilaevis
FBgn0031266	Sf3b1	96	75.610	ENSCVAG00000003680	sf3b1	99	75.610	Cyprinodon_variegatus
FBgn0031266	Sf3b1	100	75.587	ENSDARG00000056138	sf3b1	100	75.587	Danio_rerio
FBgn0031266	Sf3b1	100	76.561	ENSDNOG00000011754	SF3B1	100	76.561	Dasypus_novemcinctus
FBgn0031266	Sf3b1	99	76.074	ENSDORG00000002399	Sf3b1	100	76.074	Dipodomys_ordii
FBgn0031266	Sf3b1	83	74.691	ENSETEG00000009188	SF3B1	100	74.691	Echinops_telfairi
FBgn0031266	Sf3b1	99	75.130	ENSEBUG00000004325	sf3b1	100	78.517	Eptatretus_burgeri
FBgn0031266	Sf3b1	100	76.618	ENSEASG00005020159	SF3B1	98	76.618	Equus_asinus_asinus
FBgn0031266	Sf3b1	100	76.618	ENSECAG00000021657	SF3B1	98	76.618	Equus_caballus
FBgn0031266	Sf3b1	74	96.380	ENSEEUG00000000836	SF3B1	76	96.380	Erinaceus_europaeus
FBgn0031266	Sf3b1	100	75.055	ENSELUG00000005977	sf3b1	98	75.182	Esox_lucius
FBgn0031266	Sf3b1	100	76.618	ENSFCAG00000005038	SF3B1	100	76.618	Felis_catus
FBgn0031266	Sf3b1	99	76.723	ENSFALG00000004281	SF3B1	99	76.723	Ficedula_albicollis
FBgn0031266	Sf3b1	100	76.618	ENSFDAG00000017510	SF3B1	100	76.618	Fukomys_damarensis
FBgn0031266	Sf3b1	100	75.880	ENSFHEG00000014333	sf3b1	100	75.880	Fundulus_heteroclitus
FBgn0031266	Sf3b1	100	75.642	ENSGMOG00000006773	sf3b1	100	75.642	Gadus_morhua
FBgn0031266	Sf3b1	100	76.583	ENSGALG00000008038	SF3B1	100	76.583	Gallus_gallus
FBgn0031266	Sf3b1	98	76.484	ENSGAFG00000000704	sf3b1	99	76.484	Gambusia_affinis
FBgn0031266	Sf3b1	100	75.991	ENSGACG00000008839	sf3b1	100	75.991	Gasterosteus_aculeatus
FBgn0031266	Sf3b1	100	76.079	ENSGAGG00000017478	SF3B1	100	76.079	Gopherus_agassizii
FBgn0031266	Sf3b1	99	74.682	ENSGGOG00000009264	SF3B1	99	74.682	Gorilla_gorilla
FBgn0031266	Sf3b1	99	76.009	ENSHBUG00000007705	sf3b1	100	76.009	Haplochromis_burtoni
FBgn0031266	Sf3b1	99	76.758	ENSHGLG00000008285	-	99	76.758	Heterocephalus_glaber_female
FBgn0031266	Sf3b1	99	75.056	ENSHGLG00100005535	-	99	75.056	Heterocephalus_glaber_male
FBgn0031266	Sf3b1	100	75.953	ENSHCOG00000016775	sf3b1	100	75.953	Hippocampus_comes
FBgn0031266	Sf3b1	100	76.401	ENSIPUG00000013171	sf3b1	100	76.401	Ictalurus_punctatus
FBgn0031266	Sf3b1	100	76.618	ENSSTOG00000011034	SF3B1	100	76.618	Ictidomys_tridecemlineatus
FBgn0031266	Sf3b1	99	76.672	ENSJJAG00000010903	Sf3b1	99	76.672	Jaculus_jaculus
FBgn0031266	Sf3b1	100	75.806	ENSKMAG00000004009	sf3b1	100	75.587	Kryptolebias_marmoratus
FBgn0031266	Sf3b1	100	75.974	ENSLBEG00000022208	sf3b1	100	75.974	Labrus_bergylta
FBgn0031266	Sf3b1	99	74.170	ENSLACG00000014832	SF3B1	99	74.170	Latimeria_chalumnae
FBgn0031266	Sf3b1	100	75.567	ENSLOCG00000003899	sf3b1	100	75.567	Lepisosteus_oculatus
FBgn0031266	Sf3b1	100	76.618	ENSLAFG00000001956	SF3B1	100	76.618	Loxodonta_africana
FBgn0031266	Sf3b1	99	76.758	ENSMMUG00000022430	SF3B1	99	76.758	Macaca_mulatta
FBgn0031266	Sf3b1	100	76.618	ENSMNEG00000042333	SF3B1	100	80.000	Macaca_nemestrina
FBgn0031266	Sf3b1	94	76.531	ENSMLEG00000026141	SF3B1	98	76.531	Mandrillus_leucophaeus
FBgn0031266	Sf3b1	100	75.880	ENSMAMG00000010241	sf3b1	100	75.880	Mastacembelus_armatus
FBgn0031266	Sf3b1	100	76.026	ENSMZEG00005021254	sf3b1	100	76.026	Maylandia_zebra
FBgn0031266	Sf3b1	99	76.649	ENSMGAG00000007017	SF3B1	99	76.649	Meleagris_gallopavo
FBgn0031266	Sf3b1	99	71.799	ENSMAUG00000009071	Sf3b1	99	73.057	Mesocricetus_auratus
FBgn0031266	Sf3b1	100	76.618	ENSMICG00000013879	SF3B1	100	76.618	Microcebus_murinus
FBgn0031266	Sf3b1	99	72.707	ENSMOCG00000000455	Sf3b1	99	72.707	Microtus_ochrogaster
FBgn0031266	Sf3b1	84	74.607	ENSMMOG00000000475	sf3b1	100	74.607	Mola_mola
FBgn0031266	Sf3b1	100	76.471	ENSMODG00000012275	SF3B1	100	76.471	Monodelphis_domestica
FBgn0031266	Sf3b1	100	75.660	ENSMALG00000017211	sf3b1	100	75.660	Monopterus_albus
FBgn0031266	Sf3b1	100	76.618	MGP_CAROLIEiJ_G0014141	Sf3b1	100	76.618	Mus_caroli
FBgn0031266	Sf3b1	100	76.618	ENSMUSG00000025982	Sf3b1	100	76.618	Mus_musculus
FBgn0031266	Sf3b1	100	76.618	MGP_SPRETEiJ_G0014947	Sf3b1	100	76.618	Mus_spretus
FBgn0031266	Sf3b1	100	76.618	ENSMPUG00000007799	SF3B1	100	76.618	Mustela_putorius_furo
FBgn0031266	Sf3b1	100	75.588	ENSMLUG00000000840	SF3B1	100	75.588	Myotis_lucifugus
FBgn0031266	Sf3b1	99	76.741	ENSNGAG00000021884	-	99	76.741	Nannospalax_galili
FBgn0031266	Sf3b1	100	74.265	ENSNBRG00000015816	sf3b1	100	74.265	Neolamprologus_brichardi
FBgn0031266	Sf3b1	100	76.618	ENSNLEG00000006861	SF3B1	100	76.618	Nomascus_leucogenys
FBgn0031266	Sf3b1	61	93.768	ENSMEUG00000015848	-	66	93.768	Notamacropus_eugenii
FBgn0031266	Sf3b1	100	68.406	ENSOPRG00000008596	SF3B1	100	68.406	Ochotona_princeps
FBgn0031266	Sf3b1	100	76.618	ENSODEG00000011153	-	100	76.618	Octodon_degus
FBgn0031266	Sf3b1	100	76.026	ENSONIG00000013758	sf3b1	100	76.026	Oreochromis_niloticus
FBgn0031266	Sf3b1	82	82.363	ENSOCUG00000012722	-	96	82.363	Oryctolagus_cuniculus
FBgn0031266	Sf3b1	100	76.026	ENSORLG00000020219	sf3b1	100	76.026	Oryzias_latipes
FBgn0031266	Sf3b1	100	76.026	ENSORLG00020001746	sf3b1	100	76.026	Oryzias_latipes_hni
FBgn0031266	Sf3b1	65	68.919	ENSORLG00015001759	sf3b1	98	68.919	Oryzias_latipes_hsok
FBgn0031266	Sf3b1	100	75.880	ENSOMEG00000019231	sf3b1	100	75.880	Oryzias_melastigma
FBgn0031266	Sf3b1	50	52.104	ENSOGAG00000000267	-	100	52.104	Otolemur_garnettii
FBgn0031266	Sf3b1	100	76.618	ENSOARG00000015374	SF3B1	100	76.618	Ovis_aries
FBgn0031266	Sf3b1	100	76.618	ENSPPAG00000035007	SF3B1	100	76.618	Pan_paniscus
FBgn0031266	Sf3b1	100	76.618	ENSPPRG00000009090	SF3B1	100	76.618	Panthera_pardus
FBgn0031266	Sf3b1	100	76.618	ENSPTIG00000021557	SF3B1	100	76.618	Panthera_tigris_altaica
FBgn0031266	Sf3b1	99	71.908	ENSPTRG00000012771	SF3B1	99	71.908	Pan_troglodytes
FBgn0031266	Sf3b1	100	76.618	ENSPANG00000013417	SF3B1	100	76.618	Papio_anubis
FBgn0031266	Sf3b1	99	76.085	ENSPKIG00000000784	sf3b1	99	76.085	Paramormyrops_kingsleyae
FBgn0031266	Sf3b1	99	76.300	ENSPSIG00000017222	SF3B1	98	76.300	Pelodiscus_sinensis
FBgn0031266	Sf3b1	91	76.125	ENSPMGG00000004330	sf3b1	99	76.125	Periophthalmus_magnuspinnatus
FBgn0031266	Sf3b1	99	76.758	ENSPEMG00000010699	Sf3b1	100	76.758	Peromyscus_maniculatus_bairdii
FBgn0031266	Sf3b1	99	76.250	ENSPMAG00000001311	sf3b1	99	76.432	Petromyzon_marinus
FBgn0031266	Sf3b1	100	76.397	ENSPCIG00000010642	SF3B1	100	76.397	Phascolarctos_cinereus
FBgn0031266	Sf3b1	100	75.678	ENSPFOG00000000073	sf3b1	100	75.678	Poecilia_formosa
FBgn0031266	Sf3b1	100	75.733	ENSPLAG00000002293	sf3b1	100	75.733	Poecilia_latipinna
FBgn0031266	Sf3b1	100	75.733	ENSPMEG00000000446	sf3b1	98	75.733	Poecilia_mexicana
FBgn0031266	Sf3b1	100	75.806	ENSPREG00000019652	sf3b1	100	75.806	Poecilia_reticulata
FBgn0031266	Sf3b1	90	81.430	ENSPPYG00000013044	SF3B1	100	81.430	Pongo_abelii
FBgn0031266	Sf3b1	100	76.471	ENSPCAG00000009292	SF3B1	100	76.471	Procavia_capensis
FBgn0031266	Sf3b1	100	76.618	ENSPCOG00000024074	SF3B1	100	76.618	Propithecus_coquereli
FBgn0031266	Sf3b1	100	76.618	ENSPVAG00000008302	SF3B1	100	76.618	Pteropus_vampyrus
FBgn0031266	Sf3b1	100	76.026	ENSPNYG00000014939	sf3b1	100	76.026	Pundamilia_nyererei
FBgn0031266	Sf3b1	100	75.953	ENSPNAG00000008288	sf3b1	100	75.953	Pygocentrus_nattereri
FBgn0031266	Sf3b1	100	76.618	ENSRNOG00000013516	Sf3b1	100	76.618	Rattus_norvegicus
FBgn0031266	Sf3b1	99	73.797	ENSRBIG00000026096	SF3B1	99	73.797	Rhinopithecus_bieti
FBgn0031266	Sf3b1	100	76.618	ENSRROG00000031308	SF3B1	100	76.618	Rhinopithecus_roxellana
FBgn0031266	Sf3b1	100	76.618	ENSSBOG00000020080	SF3B1	100	76.618	Saimiri_boliviensis_boliviensis
FBgn0031266	Sf3b1	100	76.471	ENSSHAG00000017564	SF3B1	100	76.471	Sarcophilus_harrisii
FBgn0031266	Sf3b1	100	75.933	ENSSFOG00015021535	sf3b1	100	75.875	Scleropages_formosus
FBgn0031266	Sf3b1	99	76.065	ENSSMAG00000013977	sf3b1	99	75.918	Scophthalmus_maximus
FBgn0031266	Sf3b1	100	75.880	ENSSDUG00000017422	sf3b1	100	75.880	Seriola_dumerili
FBgn0031266	Sf3b1	100	75.880	ENSSLDG00000019495	sf3b1	100	75.880	Seriola_lalandi_dorsalis
FBgn0031266	Sf3b1	75	90.476	ENSSARG00000007016	SF3B1	74	90.476	Sorex_araneus
FBgn0031266	Sf3b1	100	76.436	ENSSPUG00000000410	SF3B1	100	76.436	Sphenodon_punctatus
FBgn0031266	Sf3b1	100	75.806	ENSSPAG00000010451	sf3b1	99	75.733	Stegastes_partitus
FBgn0031266	Sf3b1	89	80.000	ENSSSCG00000016075	SF3B1	100	80.000	Sus_scrofa
FBgn0031266	Sf3b1	100	76.583	ENSTGUG00000010553	SF3B1	100	76.583	Taeniopygia_guttata
FBgn0031266	Sf3b1	100	76.320	ENSTRUG00000015534	sf3b1	100	76.320	Takifugu_rubripes
FBgn0031266	Sf3b1	84	83.832	ENSTBEG00000008714	SF3B1	93	83.832	Tupaia_belangeri
FBgn0031266	Sf3b1	92	86.726	ENSTTRG00000003414	SF3B1	92	86.726	Tursiops_truncatus
FBgn0031266	Sf3b1	99	73.155	ENSUAMG00000018506	SF3B1	96	93.784	Ursus_americanus
FBgn0031266	Sf3b1	100	76.618	ENSUMAG00000020945	SF3B1	100	76.618	Ursus_maritimus
FBgn0031266	Sf3b1	88	88.217	ENSVPAG00000005798	SF3B1	89	88.217	Vicugna_pacos
FBgn0031266	Sf3b1	100	76.618	ENSVVUG00000025948	SF3B1	95	76.618	Vulpes_vulpes
FBgn0031266	Sf3b1	100	75.956	ENSXETG00000013339	sf3b1	100	75.956	Xenopus_tropicalis
FBgn0031266	Sf3b1	100	73.961	ENSXCOG00000018086	sf3b1	100	73.961	Xiphophorus_couchianus
FBgn0031266	Sf3b1	100	75.640	ENSXMAG00000007369	sf3b1	100	75.778	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	10908584.	ISS	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component