EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0031492 (Gene tree)
Gene ID: 33513
Gene Symbol: CG3542
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 3214
Position: chr2L: 3023226-3026439
Accession
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0077648	-	2906	-	FBpp0077333	806 (aa)	-	Q9VQK5

Gene Model

Click here to download FBgn0031492's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0031492's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0031492	CG3542	68	43.087	ENSG00000196504	PRPF40A	87	41.596	Homo_sapiens
FBgn0031492	CG3542	63	45.769	ENSMUSG00000061136	Prpf40a	88	40.871	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	10908584.	ISS	Component
GO:0045292	mRNA cis splicing, via spliceosome	-	IEA	Process
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component