EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0031868 (Gene tree)
Gene ID: 33964
Gene Symbol: Rat1
Alias: -
Full Name: Rat1 5'-3' exoribonuclease
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 3341 bases
Position: chr2L:6908083-6911423
Accession: FBgn0031868
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078973	XRN_N	PF03159.18	1.1e-101	1	1
FBpp0304602	XRN_N	PF03159.18	1.1e-101	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079345	-	3341	-	FBpp0078973	908 (aa)	-	Q9VM71
FBtr0332324	-	2975	-	FBpp0304602	908 (aa)	-	Q9VM71

Gene Model

Click here to download FBgn0031868's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0031868's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0031868	Rat1	87	56.711	ENSG00000088930	XRN2	87	56.832	Homo_sapiens
FBgn0031868	Rat1	88	55.967	ENSAPOG00000009818	xrn2	85	55.716	Acanthochromis_polyacanthus
FBgn0031868	Rat1	89	55.948	ENSAMEG00000012581	XRN2	87	56.469	Ailuropoda_melanoleuca
FBgn0031868	Rat1	97	50.273	ENSACIG00000015047	xrn2	85	61.407	Amphilophus_citrinellus
FBgn0031868	Rat1	92	54.805	ENSAOCG00000023632	xrn2	85	55.475	Amphiprion_ocellaris
FBgn0031868	Rat1	96	52.979	ENSAPEG00000014871	xrn2	85	55.475	Amphiprion_percula
FBgn0031868	Rat1	92	54.400	ENSATEG00000001273	xrn2	87	54.796	Anabas_testudineus
FBgn0031868	Rat1	85	55.266	ENSAPLG00000013869	XRN2	85	55.654	Anas_platyrhynchos
FBgn0031868	Rat1	91	53.464	ENSACAG00000005565	XRN2	86	54.733	Anolis_carolinensis
FBgn0031868	Rat1	90	55.516	ENSANAG00000020126	XRN2	87	57.126	Aotus_nancymaae
FBgn0031868	Rat1	92	52.511	ENSACLG00000010522	xrn2	96	71.901	Astatotilapia_calliptera
FBgn0031868	Rat1	89	54.854	ENSAMXG00000018301	xrn2	86	54.994	Astyanax_mexicanus
FBgn0031868	Rat1	89	56.631	ENSBTAG00000011304	XRN2	86	57.557	Bos_taurus
FBgn0031868	Rat1	88	51.809	WBGene00006964	xrn-2	87	51.986	Caenorhabditis_elegans
FBgn0031868	Rat1	90	55.047	ENSCJAG00000005611	XRN2	86	56.432	Callithrix_jacchus
FBgn0031868	Rat1	90	55.582	ENSCAFG00000005185	XRN2	87	56.953	Canis_familiaris
FBgn0031868	Rat1	90	55.582	ENSCAFG00020027479	XRN2	87	56.953	Canis_lupus_dingo
FBgn0031868	Rat1	89	56.511	ENSCHIG00000006921	XRN2	86	57.557	Capra_hircus
FBgn0031868	Rat1	87	56.711	ENSTSYG00000008315	XRN2	87	56.832	Carlito_syrichta
FBgn0031868	Rat1	83	49.025	ENSCAPG00000010773	XRN2	83	48.822	Cavia_aperea
FBgn0031868	Rat1	87	56.590	ENSCPOG00000009407	XRN2	87	56.711	Cavia_porcellus
FBgn0031868	Rat1	87	56.711	ENSCATG00000040350	XRN2	87	56.832	Cercocebus_atys
FBgn0031868	Rat1	87	56.711	ENSCLAG00000013419	XRN2	87	56.832	Chinchilla_lanigera
FBgn0031868	Rat1	87	56.711	ENSCSAG00000011094	XRN2	87	56.832	Chlorocebus_sabaeus
FBgn0031868	Rat1	65	76.882	ENSCHOG00000013404	XRN2	53	76.882	Choloepus_hoffmanni
FBgn0031868	Rat1	91	54.715	ENSCPBG00000023533	XRN2	86	56.145	Chrysemys_picta_bellii
FBgn0031868	Rat1	87	54.197	ENSCING00000022336	-	100	54.197	Ciona_intestinalis
FBgn0031868	Rat1	95	51.631	ENSCSAVG00000011217	-	100	59.881	Ciona_savignyi
FBgn0031868	Rat1	87	56.711	ENSCANG00000040240	XRN2	87	56.832	Colobus_angolensis_palliatus
FBgn0031868	Rat1	87	55.811	ENSCGRG00001010676	Xrn2	88	55.889	Cricetulus_griseus_chok1gshd
FBgn0031868	Rat1	85	54.367	ENSCGRG00000006378	Xrn2	86	54.457	Cricetulus_griseus_crigri
FBgn0031868	Rat1	52	58.511	ENSCSEG00000005628	xrn2	93	58.511	Cynoglossus_semilaevis
FBgn0031868	Rat1	90	52.601	ENSCVAG00000018999	xrn2	87	63.812	Cyprinodon_variegatus
FBgn0031868	Rat1	90	55.530	ENSDARG00000101900	xrn2	88	64.017	Danio_rerio
FBgn0031868	Rat1	87	57.074	ENSDNOG00000001895	XRN2	87	57.195	Dasypus_novemcinctus
FBgn0031868	Rat1	87	56.485	ENSDORG00000005434	Xrn2	86	56.606	Dipodomys_ordii
FBgn0031868	Rat1	80	66.344	ENSETEG00000001740	XRN2	76	66.344	Echinops_telfairi
FBgn0031868	Rat1	85	56.432	ENSEBUG00000016136	xrn2	100	56.189	Eptatretus_burgeri
FBgn0031868	Rat1	87	56.953	ENSEASG00005002484	XRN2	87	56.590	Equus_asinus_asinus
FBgn0031868	Rat1	87	56.953	ENSECAG00000018988	XRN2	87	55.621	Equus_caballus
FBgn0031868	Rat1	61	80.000	ENSEEUG00000009265	XRN2	57	54.244	Erinaceus_europaeus
FBgn0031868	Rat1	90	56.109	ENSELUG00000000552	xrn2	85	55.907	Esox_lucius
FBgn0031868	Rat1	90	55.699	ENSFCAG00000007970	XRN2	87	56.590	Felis_catus
FBgn0031868	Rat1	91	54.588	ENSFALG00000004508	XRN2	87	55.448	Ficedula_albicollis
FBgn0031868	Rat1	87	56.401	ENSFDAG00000016311	XRN2	87	56.711	Fukomys_damarensis
FBgn0031868	Rat1	51	57.479	ENSFHEG00000013039	xrn2	93	65.574	Fundulus_heteroclitus
FBgn0031868	Rat1	87	56.055	ENSGMOG00000013436	xrn2	100	56.180	Gadus_morhua
FBgn0031868	Rat1	89	55.213	ENSGALG00000008372	XRN2	87	55.340	Gallus_gallus
FBgn0031868	Rat1	92	53.776	ENSGAFG00000014284	xrn2	93	65.714	Gambusia_affinis
FBgn0031868	Rat1	88	56.914	ENSGACG00000011870	xrn2	99	57.285	Gasterosteus_aculeatus
FBgn0031868	Rat1	91	54.756	ENSGAGG00000004884	XRN2	86	56.182	Gopherus_agassizii
FBgn0031868	Rat1	87	56.711	ENSGGOG00000013738	XRN2	87	56.832	Gorilla_gorilla
FBgn0031868	Rat1	52	60.797	ENSHBUG00000005077	xrn2	96	71.901	Haplochromis_burtoni
FBgn0031868	Rat1	87	56.970	ENSHGLG00000014831	XRN2	86	56.606	Heterocephalus_glaber_female
FBgn0031868	Rat1	87	56.970	ENSHGLG00100013130	XRN2	86	56.606	Heterocephalus_glaber_male
FBgn0031868	Rat1	92	54.378	ENSHCOG00000011994	xrn2	91	54.061	Hippocampus_comes
FBgn0031868	Rat1	89	55.319	ENSIPUG00000006639	xrn2	86	55.383	Ictalurus_punctatus
FBgn0031868	Rat1	87	56.953	ENSSTOG00000000589	XRN2	87	56.590	Ictidomys_tridecemlineatus
FBgn0031868	Rat1	90	55.189	ENSJJAG00000022128	Xrn2	87	56.796	Jaculus_jaculus
FBgn0031868	Rat1	51	64.530	ENSLBEG00000010041	xrn2	92	71.429	Labrus_bergylta
FBgn0031868	Rat1	94	52.009	ENSLACG00000008307	XRN2	97	56.064	Latimeria_chalumnae
FBgn0031868	Rat1	99	49.790	ENSLOCG00000016874	xrn2	91	54.968	Lepisosteus_oculatus
FBgn0031868	Rat1	88	55.875	ENSLAFG00000014624	XRN2	87	56.287	Loxodonta_africana
FBgn0031868	Rat1	87	56.711	ENSMFAG00000038122	XRN2	87	56.832	Macaca_fascicularis
FBgn0031868	Rat1	87	56.711	ENSMMUG00000011405	XRN2	87	56.832	Macaca_mulatta
FBgn0031868	Rat1	87	56.711	ENSMNEG00000040626	XRN2	87	56.832	Macaca_nemestrina
FBgn0031868	Rat1	87	56.416	ENSMLEG00000041897	XRN2	87	56.832	Mandrillus_leucophaeus
FBgn0031868	Rat1	99	53.290	ENSMAMG00000008633	xrn2	86	56.410	Mastacembelus_armatus
FBgn0031868	Rat1	92	53.820	ENSMZEG00005022362	xrn2	93	54.753	Maylandia_zebra
FBgn0031868	Rat1	89	54.900	ENSMGAG00000003196	XRN2	86	55.018	Meleagris_gallopavo
FBgn0031868	Rat1	87	56.675	ENSMAUG00000021842	Xrn2	86	56.675	Mesocricetus_auratus
FBgn0031868	Rat1	87	56.242	ENSMICG00000008126	XRN2	87	56.606	Microcebus_murinus
FBgn0031868	Rat1	87	56.227	ENSMOCG00000012588	Xrn2	87	56.130	Microtus_ochrogaster
FBgn0031868	Rat1	87	55.716	ENSMMOG00000017576	xrn2	85	61.571	Mola_mola
FBgn0031868	Rat1	91	54.662	ENSMODG00000006163	XRN2	86	55.918	Monodelphis_domestica
FBgn0031868	Rat1	92	54.124	ENSMALG00000011355	xrn2	94	55.409	Monopterus_albus
FBgn0031868	Rat1	87	56.364	MGP_CAROLIEiJ_G0024400	Xrn2	86	56.364	Mus_caroli
FBgn0031868	Rat1	87	56.364	ENSMUSG00000027433	Xrn2	86	56.364	Mus_musculus
FBgn0031868	Rat1	87	56.364	MGP_PahariEiJ_G0025843	Xrn2	86	56.364	Mus_pahari
FBgn0031868	Rat1	87	56.364	MGP_SPRETEiJ_G0025318	Xrn2	93	69.919	Mus_spretus
FBgn0031868	Rat1	87	55.687	ENSMPUG00000001198	XRN2	81	55.332	Mustela_putorius_furo
FBgn0031868	Rat1	87	56.747	ENSMLUG00000001536	XRN2	87	56.595	Myotis_lucifugus
FBgn0031868	Rat1	87	56.832	ENSNGAG00000018138	Xrn2	87	56.250	Nannospalax_galili
FBgn0031868	Rat1	92	53.829	ENSNBRG00000008062	xrn2	96	71.901	Neolamprologus_brichardi
FBgn0031868	Rat1	87	56.711	ENSNLEG00000009991	XRN2	87	56.832	Nomascus_leucogenys
FBgn0031868	Rat1	52	60.000	ENSMEUG00000008622	-	52	60.000	Notamacropus_eugenii
FBgn0031868	Rat1	87	56.832	ENSODEG00000010745	-	87	56.953	Octodon_degus
FBgn0031868	Rat1	85	52.393	ENSODEG00000000860	-	88	52.259	Octodon_degus
FBgn0031868	Rat1	92	53.723	ENSONIG00000018720	xrn2	86	54.921	Oreochromis_niloticus
FBgn0031868	Rat1	89	56.198	ENSOANG00000015673	XRN2	87	55.702	Ornithorhynchus_anatinus
FBgn0031868	Rat1	87	56.832	ENSOCUG00000013468	XRN2	87	56.953	Oryctolagus_cuniculus
FBgn0031868	Rat1	99	52.526	ENSORLG00000017213	xrn2	93	55.036	Oryzias_latipes
FBgn0031868	Rat1	99	52.880	ENSORLG00020001824	xrn2	87	55.036	Oryzias_latipes_hni
FBgn0031868	Rat1	99	52.526	ENSORLG00015019747	xrn2	87	55.036	Oryzias_latipes_hsok
FBgn0031868	Rat1	91	54.545	ENSOMEG00000019820	xrn2	85	54.970	Oryzias_melastigma
FBgn0031868	Rat1	87	56.884	ENSOGAG00000001068	XRN2	87	57.367	Otolemur_garnettii
FBgn0031868	Rat1	85	56.203	ENSOARG00000004443	XRN2	86	56.807	Ovis_aries
FBgn0031868	Rat1	87	56.711	ENSPPAG00000033549	XRN2	87	56.832	Pan_paniscus
FBgn0031868	Rat1	90	55.699	ENSPPRG00000008732	XRN2	87	56.590	Panthera_pardus
FBgn0031868	Rat1	86	55.542	ENSPTIG00000015683	XRN2	84	55.817	Panthera_tigris_altaica
FBgn0031868	Rat1	87	56.711	ENSPTRG00000013308	XRN2	87	56.832	Pan_troglodytes
FBgn0031868	Rat1	87	56.711	ENSPANG00000018088	XRN2	87	56.832	Papio_anubis
FBgn0031868	Rat1	92	54.100	ENSPKIG00000016889	xrn2	86	54.862	Paramormyrops_kingsleyae
FBgn0031868	Rat1	81	55.253	ENSPSIG00000014666	XRN2	99	55.039	Pelodiscus_sinensis
FBgn0031868	Rat1	88	55.423	ENSPEMG00000000111	Xrn2	87	56.250	Peromyscus_maniculatus_bairdii
FBgn0031868	Rat1	92	53.767	ENSPFOG00000004182	xrn2	86	55.461	Poecilia_formosa
FBgn0031868	Rat1	92	53.661	ENSPLAG00000007351	xrn2	93	54.982	Poecilia_latipinna
FBgn0031868	Rat1	92	54.171	ENSPREG00000012452	xrn2	93	55.156	Poecilia_reticulata
FBgn0031868	Rat1	88	55.995	ENSPPYG00000010755	XRN2	86	56.501	Pongo_abelii
FBgn0031868	Rat1	87	52.174	ENSPCAG00000011191	XRN2	86	52.536	Procavia_capensis
FBgn0031868	Rat1	87	52.369	ENSPCOG00000016468	XRN2	85	52.734	Propithecus_coquereli
FBgn0031868	Rat1	79	51.619	ENSPVAG00000004596	XRN2	79	51.978	Pteropus_vampyrus
FBgn0031868	Rat1	92	52.511	ENSPNYG00000001765	xrn2	93	53.118	Pundamilia_nyererei
FBgn0031868	Rat1	88	54.911	ENSPNAG00000010956	xrn2	85	55.222	Pygocentrus_nattereri
FBgn0031868	Rat1	88	55.235	ENSRNOG00000011785	Xrn2	86	55.904	Rattus_norvegicus
FBgn0031868	Rat1	87	56.813	ENSRBIG00000036193	XRN2	100	56.934	Rhinopithecus_bieti
FBgn0031868	Rat1	87	56.711	ENSRROG00000044400	XRN2	78	56.832	Rhinopithecus_roxellana
FBgn0031868	Rat1	75	48.747	YOR048C	RAT1	67	48.747	Saccharomyces_cerevisiae
FBgn0031868	Rat1	90	55.582	ENSSBOG00000021014	XRN2	87	56.469	Saimiri_boliviensis_boliviensis
FBgn0031868	Rat1	91	53.642	ENSSFOG00015001091	xrn2	89	53.656	Scleropages_formosus
FBgn0031868	Rat1	88	55.662	ENSSMAG00000007834	xrn2	84	55.502	Scophthalmus_maximus
FBgn0031868	Rat1	92	53.689	ENSSDUG00000012802	xrn2	95	55.210	Seriola_dumerili
FBgn0031868	Rat1	96	54.343	ENSSLDG00000021273	xrn2	93	56.707	Seriola_lalandi_dorsalis
FBgn0031868	Rat1	57	80.000	ENSSARG00000005859	-	58	80.000	Sorex_araneus
FBgn0031868	Rat1	97	49.785	ENSSPUG00000005485	XRN2	85	53.438	Sphenodon_punctatus
FBgn0031868	Rat1	92	54.577	ENSSPAG00000016027	xrn2	85	54.994	Stegastes_partitus
FBgn0031868	Rat1	90	54.524	ENSSSCG00000007109	XRN2	86	55.893	Sus_scrofa
FBgn0031868	Rat1	91	53.526	ENSTGUG00000007535	XRN2	87	54.699	Taeniopygia_guttata
FBgn0031868	Rat1	92	54.977	ENSTRUG00000015489	xrn2	84	55.529	Takifugu_rubripes
FBgn0031868	Rat1	91	55.673	ENSTNIG00000010712	xrn2	86	56.744	Tetraodon_nigroviridis
FBgn0031868	Rat1	87	56.250	ENSTBEG00000004119	XRN2	87	56.763	Tupaia_belangeri
FBgn0031868	Rat1	80	61.221	ENSTTRG00000009087	XRN2	80	61.759	Tursiops_truncatus
FBgn0031868	Rat1	94	54.228	ENSUAMG00000024634	XRN2	94	56.646	Ursus_americanus
FBgn0031868	Rat1	86	55.623	ENSUMAG00000004012	XRN2	81	56.156	Ursus_maritimus
FBgn0031868	Rat1	77	51.432	ENSVPAG00000010694	XRN2	79	51.766	Vicugna_pacos
FBgn0031868	Rat1	90	55.582	ENSVVUG00000012178	XRN2	87	56.469	Vulpes_vulpes
FBgn0031868	Rat1	99	53.148	ENSXETG00000023501	xrn2	87	56.740	Xenopus_tropicalis
FBgn0031868	Rat1	92	53.539	ENSXMAG00000000242	xrn2	93	66.190	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000738	DNA catabolic process, exonucleolytic	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004534	5'-3' exoribonuclease activity	-	IEA	Function
GO:0005634	nucleus	17363252.21300896.	IDA	Component
GO:0008409	5'-3' exonuclease activity	-	ISS	Function