EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0031883 (Gene tree)
Gene ID: 33989
Gene Symbol: Caper
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 5158 bases
Position: chr2L:7032721-7037878
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0088579	RRM_1	PF00076.22	9.3e-41	1	2
FBpp0088579	RRM_1	PF00076.22	9.3e-41	2	2
FBpp0088583	RRM_1	PF00076.22	9.3e-41	1	2
FBpp0088583	RRM_1	PF00076.22	9.3e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0344709	-	2561	-	FBpp0311042	21 (aa)	-	X2JDG0
FBtr0344708	-	2623	-	FBpp0311041	21 (aa)	-	X2JDG0
FBtr0089640	-	2128	-	FBpp0088583	594 (aa)	-	Q9VM49
FBtr0344710	-	2453	-	FBpp0311043	22 (aa)	-	X2J9R6
FBtr0344711	-	3145	-	FBpp0311044	22 (aa)	-	X2J523
FBtr0344712	-	2484	-	FBpp0311045	22 (aa)	-	X2J523
FBtr0089636	-	2457	-	FBpp0088579	594 (aa)	-	Q9VM49

Gene Model

Click here to download FBgn0031883's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0031883's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0031883	Caper	57	31.034	FBgn0086675	fne	93	31.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0031883	Caper	63	49.871	WBGene00021921	Y55F3AM.3	86	50.129	Caenorhabditis_elegans
FBgn0031883	Caper	58	58.659	ENSCING00000020692	-	80	57.632	Ciona_intestinalis
FBgn0031883	Caper	59	56.906	ENSCSAVG00000006572	-	81	55.990	Ciona_savignyi

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.24643257.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	25294944.	HDA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component