EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0032240 (Gene tree)
Gene ID: 3772012
Gene Symbol: CG17768
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 2007 bases
Position: chr2L:10403197-10405203
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0099642	LSM	PF01423.22	8.9e-16	1	1
FBpp0293054	LSM	PF01423.22	8.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0100253	-	1578	-	FBpp0099642	154 (aa)	-	Q9VKW8
FBtr0304111	-	530	-	FBpp0293054	154 (aa)	-	Q8IGS9

Gene Model

Click here to download FBgn0032240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0032240's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0032240	CG17768	56	37.778	FBgn0036277	CG10418	93	37.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0032240	CG17768	57	88.636	ENSG00000130520	LSM4	99	69.118	Homo_sapiens
FBgn0032240	CG17768	63	81.443	ENSAPOG00000005643	lsm4	66	81.000	Acanthochromis_polyacanthus
FBgn0032240	CG17768	56	88.506	ENSAMEG00000011162	LSM4	66	81.250	Ailuropoda_melanoleuca
FBgn0032240	CG17768	63	81.443	ENSAOCG00000006414	lsm4	68	81.000	Amphiprion_ocellaris
FBgn0032240	CG17768	63	81.443	ENSAPEG00000006238	lsm4	67	81.000	Amphiprion_percula
FBgn0032240	CG17768	63	81.818	ENSATEG00000016559	lsm4	66	82.000	Anabas_testudineus
FBgn0032240	CG17768	57	88.636	ENSANAG00000034659	LSM4	70	81.443	Aotus_nancymaae
FBgn0032240	CG17768	63	81.443	ENSACLG00000022738	lsm4	68	81.000	Astatotilapia_calliptera
FBgn0032240	CG17768	63	82.474	ENSAMXG00000016932	lsm4	68	82.474	Astyanax_mexicanus
FBgn0032240	CG17768	57	88.636	ENSBTAG00000008578	LSM4	70	81.443	Bos_taurus
FBgn0032240	CG17768	54	75.904	WBGene00003078	lsm-4	81	67.000	Caenorhabditis_elegans
FBgn0032240	CG17768	57	88.636	ENSCJAG00000014171	LSM4	70	81.443	Callithrix_jacchus
FBgn0032240	CG17768	57	88.636	ENSCAFG00000014900	LSM4	63	81.443	Canis_familiaris
FBgn0032240	CG17768	57	88.636	ENSCAFG00020012137	LSM4	70	81.443	Canis_lupus_dingo
FBgn0032240	CG17768	56	88.506	ENSCHIG00000010928	LSM4	64	81.250	Capra_hircus
FBgn0032240	CG17768	57	89.773	ENSTSYG00000030906	LSM4	70	82.474	Carlito_syrichta
FBgn0032240	CG17768	57	89.773	ENSCAPG00000014140	LSM4	70	82.474	Cavia_aperea
FBgn0032240	CG17768	57	89.773	ENSCPOG00000024117	LSM4	70	82.474	Cavia_porcellus
FBgn0032240	CG17768	57	88.636	ENSCCAG00000036308	LSM4	70	81.443	Cebus_capucinus
FBgn0032240	CG17768	57	88.636	ENSCATG00000029311	LSM4	97	68.657	Cercocebus_atys
FBgn0032240	CG17768	57	88.636	ENSCLAG00000010828	LSM4	70	81.443	Chinchilla_lanigera
FBgn0032240	CG17768	57	88.636	ENSCSAG00000005370	LSM4	70	81.443	Chlorocebus_sabaeus
FBgn0032240	CG17768	57	87.500	ENSCPBG00000012925	LSM4	78	77.570	Chrysemys_picta_bellii
FBgn0032240	CG17768	56	89.535	ENSCING00000007519	-	77	82.653	Ciona_intestinalis
FBgn0032240	CG17768	56	88.372	ENSCSAVG00000008596	-	78	81.633	Ciona_savignyi
FBgn0032240	CG17768	57	88.636	ENSCANG00000043686	LSM4	97	68.116	Colobus_angolensis_palliatus
FBgn0032240	CG17768	57	88.636	ENSCGRG00001014436	Lsm4	64	87.778	Cricetulus_griseus_chok1gshd
FBgn0032240	CG17768	56	88.506	ENSCGRG00000009398	Lsm4	64	87.640	Cricetulus_griseus_crigri
FBgn0032240	CG17768	63	81.443	ENSCSEG00000016127	lsm4	68	81.443	Cynoglossus_semilaevis
FBgn0032240	CG17768	58	86.667	ENSCVAG00000010601	lsm4	70	81.000	Cyprinodon_variegatus
FBgn0032240	CG17768	53	79.268	ENSCVAG00000021828	lsm4	65	78.824	Cyprinodon_variegatus
FBgn0032240	CG17768	63	82.474	ENSDARG00000023852	lsm4	68	82.474	Danio_rerio
FBgn0032240	CG17768	57	88.636	ENSDORG00000024225	Lsm4	70	81.443	Dipodomys_ordii
FBgn0032240	CG17768	52	86.250	ENSEBUG00000003639	-	53	86.250	Eptatretus_burgeri
FBgn0032240	CG17768	62	82.292	ENSELUG00000012821	lsm4	73	82.292	Esox_lucius
FBgn0032240	CG17768	57	88.636	ENSFCAG00000040580	LSM4	70	81.443	Felis_catus
FBgn0032240	CG17768	56	87.356	ENSFALG00000009478	LSM4	70	81.250	Ficedula_albicollis
FBgn0032240	CG17768	56	88.506	ENSFDAG00000010124	LSM4	70	81.250	Fukomys_damarensis
FBgn0032240	CG17768	62	82.292	ENSGMOG00000007729	lsm4	66	82.474	Gadus_morhua
FBgn0032240	CG17768	57	87.500	ENSGALG00000003385	LSM4	70	81.443	Gallus_gallus
FBgn0032240	CG17768	63	81.443	ENSGAFG00000004903	lsm4	62	76.829	Gambusia_affinis
FBgn0032240	CG17768	58	86.667	ENSGACG00000008140	lsm4	67	81.000	Gasterosteus_aculeatus
FBgn0032240	CG17768	57	87.500	ENSGAGG00000017812	LSM4	78	77.570	Gopherus_agassizii
FBgn0032240	CG17768	57	88.636	ENSGGOG00000012914	-	97	68.657	Gorilla_gorilla
FBgn0032240	CG17768	58	86.667	ENSHBUG00000008858	lsm4	56	81.000	Haplochromis_burtoni
FBgn0032240	CG17768	57	88.636	ENSHGLG00000006568	LSM4	70	81.443	Heterocephalus_glaber_female
FBgn0032240	CG17768	58	87.778	ENSHGLG00100007894	LSM4	97	87.778	Heterocephalus_glaber_male
FBgn0032240	CG17768	63	81.443	ENSHCOG00000008819	lsm4	68	81.443	Hippocampus_comes
FBgn0032240	CG17768	63	82.474	ENSIPUG00000005368	Lsm4	68	82.474	Ictalurus_punctatus
FBgn0032240	CG17768	57	88.636	ENSSTOG00000016494	LSM4	70	81.443	Ictidomys_tridecemlineatus
FBgn0032240	CG17768	57	88.636	ENSJJAG00000017420	Lsm4	65	87.778	Jaculus_jaculus
FBgn0032240	CG17768	56	87.209	ENSKMAG00000005073	lsm4	73	77.143	Kryptolebias_marmoratus
FBgn0032240	CG17768	63	81.443	ENSLBEG00000027930	lsm4	67	81.000	Labrus_bergylta
FBgn0032240	CG17768	57	87.500	ENSLACG00000015861	LSM4	69	81.443	Latimeria_chalumnae
FBgn0032240	CG17768	63	82.474	ENSLOCG00000002025	lsm4	69	82.474	Lepisosteus_oculatus
FBgn0032240	CG17768	56	87.356	ENSLAFG00000017459	LSM4	69	80.208	Loxodonta_africana
FBgn0032240	CG17768	57	88.636	ENSMFAG00000031194	LSM4	97	68.116	Macaca_fascicularis
FBgn0032240	CG17768	57	88.636	ENSMMUG00000004405	LSM4	70	81.443	Macaca_mulatta
FBgn0032240	CG17768	57	88.636	ENSMNEG00000042899	LSM4	97	68.116	Macaca_nemestrina
FBgn0032240	CG17768	57	88.636	ENSMLEG00000027948	LSM4	97	68.657	Mandrillus_leucophaeus
FBgn0032240	CG17768	63	81.443	ENSMAMG00000006190	lsm4	70	81.000	Mastacembelus_armatus
FBgn0032240	CG17768	63	81.443	ENSMZEG00005016420	lsm4	68	81.000	Maylandia_zebra
FBgn0032240	CG17768	56	87.356	ENSMGAG00000004976	LSM4	69	81.250	Meleagris_gallopavo
FBgn0032240	CG17768	58	87.778	ENSMICG00000000222	LSM4	65	87.778	Microcebus_murinus
FBgn0032240	CG17768	57	88.636	ENSMOCG00000020861	Lsm4	64	87.778	Microtus_ochrogaster
FBgn0032240	CG17768	63	80.808	ENSMALG00000018159	lsm4	70	81.000	Monopterus_albus
FBgn0032240	CG17768	57	88.636	MGP_CAROLIEiJ_G0031158	Lsm4	64	87.778	Mus_caroli
FBgn0032240	CG17768	57	88.636	ENSMUSG00000031848	Lsm4	95	74.286	Mus_musculus
FBgn0032240	CG17768	57	88.636	MGP_PahariEiJ_G0021623	Lsm4	64	87.778	Mus_pahari
FBgn0032240	CG17768	57	88.636	MGP_SPRETEiJ_G0032276	Lsm4	64	87.778	Mus_spretus
FBgn0032240	CG17768	57	88.636	ENSMPUG00000015589	LSM4	70	81.443	Mustela_putorius_furo
FBgn0032240	CG17768	56	88.506	ENSMLUG00000004010	LSM4	69	81.250	Myotis_lucifugus
FBgn0032240	CG17768	57	88.636	ENSNGAG00000008644	Lsm4	65	87.778	Nannospalax_galili
FBgn0032240	CG17768	58	86.517	ENSNBRG00000022150	lsm4	61	80.808	Neolamprologus_brichardi
FBgn0032240	CG17768	57	79.545	ENSODEG00000004519	-	70	72.165	Octodon_degus
FBgn0032240	CG17768	57	88.636	ENSODEG00000020549	-	70	81.443	Octodon_degus
FBgn0032240	CG17768	63	81.443	ENSONIG00000012724	lsm4	68	81.000	Oreochromis_niloticus
FBgn0032240	CG17768	56	82.418	ENSOANG00000007434	LSM4	86	77.000	Ornithorhynchus_anatinus
FBgn0032240	CG17768	63	80.412	ENSORLG00000008391	lsm4	69	80.000	Oryzias_latipes
FBgn0032240	CG17768	63	80.412	ENSORLG00020014829	lsm4	69	80.000	Oryzias_latipes_hni
FBgn0032240	CG17768	63	80.412	ENSORLG00015010205	lsm4	69	80.000	Oryzias_latipes_hsok
FBgn0032240	CG17768	63	82.474	ENSOMEG00000003606	lsm4	69	82.000	Oryzias_melastigma
FBgn0032240	CG17768	58	87.640	ENSOGAG00000027992	LSM4	61	87.640	Otolemur_garnettii
FBgn0032240	CG17768	56	88.506	ENSOARG00000012553	LSM4	66	81.250	Ovis_aries
FBgn0032240	CG17768	57	88.636	ENSPPAG00000044045	-	70	81.443	Pan_paniscus
FBgn0032240	CG17768	57	88.636	ENSPPRG00000018264	LSM4	70	81.443	Panthera_pardus
FBgn0032240	CG17768	56	88.506	ENSPTIG00000006306	LSM4	70	81.250	Panthera_tigris_altaica
FBgn0032240	CG17768	57	88.636	ENSPTRG00000031470	LSM4	70	81.443	Pan_troglodytes
FBgn0032240	CG17768	57	88.636	ENSPANG00000014399	LSM4	97	68.657	Papio_anubis
FBgn0032240	CG17768	63	82.474	ENSPKIG00000006154	lsm4	69	82.474	Paramormyrops_kingsleyae
FBgn0032240	CG17768	56	87.356	ENSPSIG00000012358	LSM4	77	77.358	Pelodiscus_sinensis
FBgn0032240	CG17768	57	88.636	ENSPEMG00000001358	Lsm4	64	87.778	Peromyscus_maniculatus_bairdii
FBgn0032240	CG17768	63	81.443	ENSPFOG00000000570	lsm4	53	81.000	Poecilia_formosa
FBgn0032240	CG17768	73	74.336	ENSPLAG00000016267	lsm4	75	77.570	Poecilia_latipinna
FBgn0032240	CG17768	63	81.443	ENSPMEG00000016378	lsm4	69	81.250	Poecilia_mexicana
FBgn0032240	CG17768	63	81.443	ENSPREG00000011290	lsm4	53	81.000	Poecilia_reticulata
FBgn0032240	CG17768	57	88.636	ENSPPYG00000009736	LSM4	70	81.443	Pongo_abelii
FBgn0032240	CG17768	58	87.778	ENSPCOG00000019837	LSM4	65	87.778	Propithecus_coquereli
FBgn0032240	CG17768	57	88.636	ENSPVAG00000015383	LSM4	70	81.443	Pteropus_vampyrus
FBgn0032240	CG17768	63	81.443	ENSPNYG00000016794	lsm4	68	81.000	Pundamilia_nyererei
FBgn0032240	CG17768	62	82.292	ENSPNAG00000016598	lsm4	72	82.292	Pygocentrus_nattereri
FBgn0032240	CG17768	57	88.636	ENSRNOG00000019572	Lsm4	64	87.778	Rattus_norvegicus
FBgn0032240	CG17768	57	88.636	ENSRBIG00000024717	LSM4	97	69.565	Rhinopithecus_bieti
FBgn0032240	CG17768	57	88.636	ENSRROG00000045706	LSM4	97	69.565	Rhinopithecus_roxellana
FBgn0032240	CG17768	53	38.462	YER112W	LSM4	55	37.500	Saccharomyces_cerevisiae
FBgn0032240	CG17768	57	87.500	ENSSHAG00000011559	LSM4	70	80.412	Sarcophilus_harrisii
FBgn0032240	CG17768	63	82.474	ENSSFOG00015021067	lsm4	69	82.474	Scleropages_formosus
FBgn0032240	CG17768	58	86.667	ENSSMAG00000021020	lsm4	70	78.095	Scophthalmus_maximus
FBgn0032240	CG17768	63	81.443	ENSSDUG00000009588	lsm4	60	81.000	Seriola_dumerili
FBgn0032240	CG17768	63	81.443	ENSSLDG00000006827	lsm4	60	81.000	Seriola_lalandi_dorsalis
FBgn0032240	CG17768	56	87.356	ENSSPUG00000010166	LSM4	62	81.250	Sphenodon_punctatus
FBgn0032240	CG17768	63	81.443	ENSSPAG00000011615	lsm4	66	81.000	Stegastes_partitus
FBgn0032240	CG17768	57	88.636	ENSSSCG00000034314	LSM4	70	81.443	Sus_scrofa
FBgn0032240	CG17768	63	82.474	ENSTRUG00000021737	lsm4	70	82.000	Takifugu_rubripes
FBgn0032240	CG17768	63	81.443	ENSTNIG00000010191	lsm4	69	81.000	Tetraodon_nigroviridis
FBgn0032240	CG17768	57	88.636	ENSUAMG00000000665	LSM4	80	81.443	Ursus_americanus
FBgn0032240	CG17768	57	88.636	ENSUMAG00000009013	LSM4	70	81.443	Ursus_maritimus
FBgn0032240	CG17768	63	81.443	ENSXETG00000024933	lsm4	70	81.443	Xenopus_tropicalis
FBgn0032240	CG17768	58	86.667	ENSXMAG00000026672	lsm4	53	81.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0017070	U6 snRNA binding	-	ISS	Function
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISS	Component