EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0032346 (Gene tree)
Gene ID: 34548
Gene Symbol: Csl4
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 994 bases
Position: chr2L:11122574-11123567
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0079813	EXOSC1	PF10447.9	9.4e-12	1	1
FBpp0079813	ECR1_N	PF14382.6	9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080226	-	940	-	FBpp0079813	204 (aa)	-	Q9VKJ4

Gene Model

Click here to download FBgn0032346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0032346's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0032346	Csl4	92	48.148	ENSG00000171311	EXOSC1	94	48.148	Homo_sapiens
FBgn0032346	Csl4	92	47.895	ENSAPOG00000007822	exosc1	95	47.895	Acanthochromis_polyacanthus
FBgn0032346	Csl4	92	48.148	ENSAMEG00000000129	EXOSC1	94	48.148	Ailuropoda_melanoleuca
FBgn0032346	Csl4	90	47.312	ENSACIG00000018956	exosc1	89	47.312	Amphilophus_citrinellus
FBgn0032346	Csl4	92	47.895	ENSAOCG00000010699	exosc1	95	47.895	Amphiprion_ocellaris
FBgn0032346	Csl4	84	41.520	ENSAPEG00000012690	exosc1	90	41.520	Amphiprion_percula
FBgn0032346	Csl4	92	47.895	ENSATEG00000018683	exosc1	95	47.895	Anabas_testudineus
FBgn0032346	Csl4	92	46.032	ENSACAG00000002101	EXOSC1	94	46.032	Anolis_carolinensis
FBgn0032346	Csl4	92	48.677	ENSANAG00000034669	EXOSC1	94	48.677	Aotus_nancymaae
FBgn0032346	Csl4	92	47.895	ENSACLG00000021243	exosc1	95	47.895	Astatotilapia_calliptera
FBgn0032346	Csl4	92	50.000	ENSAMXG00000011116	exosc1	95	50.000	Astyanax_mexicanus
FBgn0032346	Csl4	92	48.148	ENSBTAG00000012699	EXOSC1	94	48.148	Bos_taurus
FBgn0032346	Csl4	95	33.971	WBGene00012966	exos-1	98	33.971	Caenorhabditis_elegans
FBgn0032346	Csl4	92	48.148	ENSCJAG00000016586	EXOSC1	94	48.148	Callithrix_jacchus
FBgn0032346	Csl4	92	48.148	ENSCAFG00000009068	EXOSC1	89	48.148	Canis_familiaris
FBgn0032346	Csl4	92	48.148	ENSCAFG00020006002	EXOSC1	89	48.148	Canis_lupus_dingo
FBgn0032346	Csl4	92	48.148	ENSCHIG00000015253	EXOSC1	94	48.148	Capra_hircus
FBgn0032346	Csl4	92	49.206	ENSTSYG00000000760	EXOSC1	94	49.206	Carlito_syrichta
FBgn0032346	Csl4	92	48.677	ENSCPOG00000001173	EXOSC1	94	48.677	Cavia_porcellus
FBgn0032346	Csl4	92	30.688	ENSCCAG00000023986	EXOSC1	92	30.688	Cebus_capucinus
FBgn0032346	Csl4	92	48.148	ENSCATG00000034114	EXOSC1	94	48.148	Cercocebus_atys
FBgn0032346	Csl4	92	48.677	ENSCLAG00000002463	EXOSC1	94	48.677	Chinchilla_lanigera
FBgn0032346	Csl4	92	48.148	ENSCSAG00000005870	EXOSC1	94	48.148	Chlorocebus_sabaeus
FBgn0032346	Csl4	90	43.243	ENSCHOG00000006477	EXOSC1	96	43.243	Choloepus_hoffmanni
FBgn0032346	Csl4	53	37.037	ENSCPBG00000011949	EXOSC1	88	37.037	Chrysemys_picta_bellii
FBgn0032346	Csl4	97	39.320	ENSCING00000022734	-	97	39.320	Ciona_intestinalis
FBgn0032346	Csl4	95	43.590	ENSCSAVG00000010865	-	96	43.590	Ciona_savignyi
FBgn0032346	Csl4	92	48.148	ENSCANG00000034159	EXOSC1	94	48.148	Colobus_angolensis_palliatus
FBgn0032346	Csl4	92	48.148	ENSCGRG00001000335	Exosc1	94	48.148	Cricetulus_griseus_chok1gshd
FBgn0032346	Csl4	92	48.148	ENSCGRG00000011602	Exosc1	94	48.148	Cricetulus_griseus_crigri
FBgn0032346	Csl4	92	43.684	ENSCSEG00000007895	exosc1	91	43.684	Cynoglossus_semilaevis
FBgn0032346	Csl4	92	47.368	ENSCVAG00000016748	exosc1	95	47.368	Cyprinodon_variegatus
FBgn0032346	Csl4	92	50.000	ENSDARG00000059841	exosc1	95	50.000	Danio_rerio
FBgn0032346	Csl4	68	45.070	ENSDNOG00000007983	EXOSC1	95	45.070	Dasypus_novemcinctus
FBgn0032346	Csl4	92	48.677	ENSDORG00000016528	Exosc1	94	48.677	Dipodomys_ordii
FBgn0032346	Csl4	92	48.677	ENSETEG00000002469	-	94	48.677	Echinops_telfairi
FBgn0032346	Csl4	92	46.875	ENSEBUG00000008164	exosc1	94	46.875	Eptatretus_burgeri
FBgn0032346	Csl4	92	45.789	ENSEASG00005008684	EXOSC1	94	45.789	Equus_asinus_asinus
FBgn0032346	Csl4	55	35.965	ENSECAG00000010621	EXOSC1	67	35.965	Equus_caballus
FBgn0032346	Csl4	92	47.619	ENSEEUG00000005647	EXOSC1	94	47.619	Erinaceus_europaeus
FBgn0032346	Csl4	91	48.663	ENSELUG00000017369	exosc1	94	40.625	Esox_lucius
FBgn0032346	Csl4	92	48.148	ENSFCAG00000040563	EXOSC1	94	45.503	Felis_catus
FBgn0032346	Csl4	92	46.032	ENSFALG00000008450	EXOSC1	94	46.032	Ficedula_albicollis
FBgn0032346	Csl4	92	48.677	ENSFDAG00000000846	EXOSC1	94	48.677	Fukomys_damarensis
FBgn0032346	Csl4	92	50.000	ENSFHEG00000009154	exosc1	95	50.000	Fundulus_heteroclitus
FBgn0032346	Csl4	92	47.368	ENSGMOG00000008993	exosc1	95	47.368	Gadus_morhua
FBgn0032346	Csl4	92	43.158	ENSGALG00000039917	EXOSC1	96	49.306	Gallus_gallus
FBgn0032346	Csl4	97	47.739	ENSGAFG00000010265	exosc1	95	47.739	Gambusia_affinis
FBgn0032346	Csl4	92	47.368	ENSGACG00000018936	exosc1	95	47.368	Gasterosteus_aculeatus
FBgn0032346	Csl4	92	44.974	ENSGAGG00000019192	EXOSC1	94	44.974	Gopherus_agassizii
FBgn0032346	Csl4	92	44.737	ENSGGOG00000003099	EXOSC1	94	44.737	Gorilla_gorilla
FBgn0032346	Csl4	92	47.895	ENSHBUG00000017857	exosc1	95	47.895	Haplochromis_burtoni
FBgn0032346	Csl4	92	48.677	ENSHGLG00000016927	EXOSC1	94	48.677	Heterocephalus_glaber_female
FBgn0032346	Csl4	92	48.677	ENSHGLG00100012208	EXOSC1	94	48.677	Heterocephalus_glaber_male
FBgn0032346	Csl4	92	46.842	ENSHCOG00000019882	exosc1	95	46.842	Hippocampus_comes
FBgn0032346	Csl4	92	48.947	ENSIPUG00000007685	exosc1	95	48.947	Ictalurus_punctatus
FBgn0032346	Csl4	57	38.793	ENSSTOG00000029860	-	88	38.793	Ictidomys_tridecemlineatus
FBgn0032346	Csl4	92	48.677	ENSSTOG00000006615	EXOSC1	94	48.677	Ictidomys_tridecemlineatus
FBgn0032346	Csl4	92	48.148	ENSJJAG00000013311	Exosc1	94	48.148	Jaculus_jaculus
FBgn0032346	Csl4	96	46.701	ENSKMAG00000001202	exosc1	81	46.701	Kryptolebias_marmoratus
FBgn0032346	Csl4	92	47.368	ENSLBEG00000011448	exosc1	95	47.368	Labrus_bergylta
FBgn0032346	Csl4	92	40.206	ENSLOCG00000003776	exosc1	94	40.206	Lepisosteus_oculatus
FBgn0032346	Csl4	92	49.206	ENSLAFG00000015983	EXOSC1	94	49.206	Loxodonta_africana
FBgn0032346	Csl4	92	48.148	ENSMFAG00000001493	EXOSC1	94	48.148	Macaca_fascicularis
FBgn0032346	Csl4	92	48.148	ENSMMUG00000020028	EXOSC1	94	44.974	Macaca_mulatta
FBgn0032346	Csl4	92	48.148	ENSMNEG00000029816	EXOSC1	94	48.148	Macaca_nemestrina
FBgn0032346	Csl4	92	43.386	ENSMLEG00000027643	EXOSC1	94	43.386	Mandrillus_leucophaeus
FBgn0032346	Csl4	92	48.947	ENSMAMG00000012200	exosc1	95	48.947	Mastacembelus_armatus
FBgn0032346	Csl4	92	47.895	ENSMZEG00005007042	exosc1	95	47.895	Maylandia_zebra
FBgn0032346	Csl4	92	43.915	ENSMAUG00000020462	-	94	43.915	Mesocricetus_auratus
FBgn0032346	Csl4	92	49.206	ENSMICG00000007664	EXOSC1	94	46.032	Microcebus_murinus
FBgn0032346	Csl4	93	44.271	ENSMOCG00000017124	-	95	44.271	Microtus_ochrogaster
FBgn0032346	Csl4	92	48.148	ENSMOCG00000006004	-	94	48.148	Microtus_ochrogaster
FBgn0032346	Csl4	89	36.413	ENSMMOG00000021403	exosc1	92	36.413	Mola_mola
FBgn0032346	Csl4	92	50.526	ENSMODG00000004213	EXOSC1	94	50.526	Monodelphis_domestica
FBgn0032346	Csl4	90	47.312	ENSMALG00000007061	exosc1	91	47.312	Monopterus_albus
FBgn0032346	Csl4	92	48.148	MGP_CAROLIEiJ_G0022959	Exosc1	94	48.148	Mus_caroli
FBgn0032346	Csl4	92	48.148	ENSMUSG00000034321	Exosc1	94	48.148	Mus_musculus
FBgn0032346	Csl4	92	48.148	MGP_PahariEiJ_G0014449	Exosc1	94	48.148	Mus_pahari
FBgn0032346	Csl4	92	48.148	MGP_SPRETEiJ_G0023880	Exosc1	94	48.148	Mus_spretus
FBgn0032346	Csl4	92	48.148	ENSMPUG00000017044	EXOSC1	94	48.148	Mustela_putorius_furo
FBgn0032346	Csl4	92	48.677	ENSMLUG00000009228	EXOSC1	94	48.677	Myotis_lucifugus
FBgn0032346	Csl4	92	47.619	ENSNGAG00000022033	Exosc1	94	47.619	Nannospalax_galili
FBgn0032346	Csl4	92	37.368	ENSNBRG00000024007	exosc1	94	37.368	Neolamprologus_brichardi
FBgn0032346	Csl4	92	47.619	ENSNLEG00000013872	EXOSC1	94	47.619	Nomascus_leucogenys
FBgn0032346	Csl4	53	44.545	ENSMEUG00000002246	EXOSC1	94	44.545	Notamacropus_eugenii
FBgn0032346	Csl4	92	48.148	ENSOPRG00000005065	EXOSC1	94	48.148	Ochotona_princeps
FBgn0032346	Csl4	92	48.677	ENSODEG00000016709	EXOSC1	94	48.677	Octodon_degus
FBgn0032346	Csl4	92	47.895	ENSONIG00000017683	exosc1	95	47.895	Oreochromis_niloticus
FBgn0032346	Csl4	55	55.652	ENSOANG00000006563	EXOSC1	95	52.419	Ornithorhynchus_anatinus
FBgn0032346	Csl4	92	46.032	ENSOCUG00000026461	-	94	46.032	Oryctolagus_cuniculus
FBgn0032346	Csl4	92	48.421	ENSOCUG00000011898	-	94	48.421	Oryctolagus_cuniculus
FBgn0032346	Csl4	93	47.917	ENSORLG00000011595	exosc1	96	47.917	Oryzias_latipes
FBgn0032346	Csl4	92	47.895	ENSORLG00020005831	exosc1	95	47.895	Oryzias_latipes_hni
FBgn0032346	Csl4	93	47.917	ENSORLG00015004317	exosc1	96	47.917	Oryzias_latipes_hsok
FBgn0032346	Csl4	93	39.062	ENSOMEG00000013907	exosc1	95	39.062	Oryzias_melastigma
FBgn0032346	Csl4	92	49.206	ENSOGAG00000016259	EXOSC1	94	49.206	Otolemur_garnettii
FBgn0032346	Csl4	92	48.148	ENSOARG00000010136	EXOSC1	94	48.148	Ovis_aries
FBgn0032346	Csl4	92	43.455	ENSPPAG00000039842	EXOSC1	94	43.455	Pan_paniscus
FBgn0032346	Csl4	92	48.148	ENSPPRG00000023366	EXOSC1	94	48.148	Panthera_pardus
FBgn0032346	Csl4	92	48.148	ENSPTIG00000017701	EXOSC1	94	48.148	Panthera_tigris_altaica
FBgn0032346	Csl4	92	48.148	ENSPTRG00000002808	EXOSC1	94	48.148	Pan_troglodytes
FBgn0032346	Csl4	92	48.148	ENSPANG00000021324	EXOSC1	94	48.148	Papio_anubis
FBgn0032346	Csl4	92	50.000	ENSPKIG00000016037	exosc1	95	50.000	Paramormyrops_kingsleyae
FBgn0032346	Csl4	70	44.444	ENSPSIG00000013571	EXOSC1	90	46.957	Pelodiscus_sinensis
FBgn0032346	Csl4	92	44.211	ENSPMGG00000014002	exosc1	95	44.211	Periophthalmus_magnuspinnatus
FBgn0032346	Csl4	92	48.148	ENSPEMG00000010710	-	94	48.148	Peromyscus_maniculatus_bairdii
FBgn0032346	Csl4	92	48.168	ENSPMAG00000000195	exosc1	95	48.168	Petromyzon_marinus
FBgn0032346	Csl4	92	50.526	ENSPCIG00000002210	EXOSC1	93	50.526	Phascolarctos_cinereus
FBgn0032346	Csl4	97	46.734	ENSPFOG00000006755	exosc1	95	46.734	Poecilia_formosa
FBgn0032346	Csl4	92	48.421	ENSPLAG00000005880	exosc1	95	48.421	Poecilia_latipinna
FBgn0032346	Csl4	97	46.734	ENSPMEG00000015598	exosc1	95	46.734	Poecilia_mexicana
FBgn0032346	Csl4	92	44.737	ENSPREG00000000405	exosc1	89	44.737	Poecilia_reticulata
FBgn0032346	Csl4	92	48.148	ENSPPYG00000002531	EXOSC1	94	48.148	Pongo_abelii
FBgn0032346	Csl4	92	49.206	ENSPCAG00000009135	EXOSC1	94	49.206	Procavia_capensis
FBgn0032346	Csl4	92	43.915	ENSPCOG00000027539	EXOSC1	94	43.915	Propithecus_coquereli
FBgn0032346	Csl4	92	48.677	ENSPVAG00000003372	EXOSC1	94	48.677	Pteropus_vampyrus
FBgn0032346	Csl4	92	47.895	ENSPNYG00000021745	exosc1	95	47.895	Pundamilia_nyererei
FBgn0032346	Csl4	92	50.526	ENSPNAG00000001944	exosc1	95	50.526	Pygocentrus_nattereri
FBgn0032346	Csl4	92	48.148	ENSRNOG00000048708	Exosc1	94	48.148	Rattus_norvegicus
FBgn0032346	Csl4	92	48.148	ENSRBIG00000035618	EXOSC1	94	48.148	Rhinopithecus_bieti
FBgn0032346	Csl4	92	48.148	ENSRROG00000032589	EXOSC1	94	44.974	Rhinopithecus_roxellana
FBgn0032346	Csl4	92	48.677	ENSSBOG00000000359	EXOSC1	94	48.677	Saimiri_boliviensis_boliviensis
FBgn0032346	Csl4	70	52.083	ENSSHAG00000018219	EXOSC1	96	52.083	Sarcophilus_harrisii
FBgn0032346	Csl4	92	49.474	ENSSFOG00015009069	exosc1	95	49.474	Scleropages_formosus
FBgn0032346	Csl4	92	47.368	ENSSFOG00015016289	-	95	47.368	Scleropages_formosus
FBgn0032346	Csl4	92	47.895	ENSSMAG00000003721	exosc1	95	47.895	Scophthalmus_maximus
FBgn0032346	Csl4	92	47.368	ENSSDUG00000002993	exosc1	95	47.368	Seriola_dumerili
FBgn0032346	Csl4	92	47.368	ENSSLDG00000025181	exosc1	95	47.368	Seriola_lalandi_dorsalis
FBgn0032346	Csl4	92	44.444	ENSSARG00000000162	EXOSC1	94	44.444	Sorex_araneus
FBgn0032346	Csl4	92	45.789	ENSSPUG00000012263	EXOSC1	94	45.789	Sphenodon_punctatus
FBgn0032346	Csl4	96	42.051	ENSSPAG00000016792	exosc1	82	42.051	Stegastes_partitus
FBgn0032346	Csl4	92	48.148	ENSSSCG00000010518	EXOSC1	86	48.148	Sus_scrofa
FBgn0032346	Csl4	92	46.032	ENSTGUG00000009692	EXOSC1	95	46.032	Taeniopygia_guttata
FBgn0032346	Csl4	91	49.198	ENSTRUG00000007706	exosc1	94	49.198	Takifugu_rubripes
FBgn0032346	Csl4	91	49.198	ENSTNIG00000014079	exosc1	93	49.198	Tetraodon_nigroviridis
FBgn0032346	Csl4	92	46.561	ENSTBEG00000006011	EXOSC1	94	46.561	Tupaia_belangeri
FBgn0032346	Csl4	90	47.568	ENSTTRG00000009887	EXOSC1	98	47.568	Tursiops_truncatus
FBgn0032346	Csl4	92	38.660	ENSUAMG00000010266	EXOSC1	94	38.660	Ursus_americanus
FBgn0032346	Csl4	92	39.683	ENSUMAG00000022002	EXOSC1	94	39.683	Ursus_maritimus
FBgn0032346	Csl4	92	48.148	ENSVVUG00000023192	EXOSC1	60	48.148	Vulpes_vulpes
FBgn0032346	Csl4	92	48.421	ENSXETG00000003434	exosc1	95	48.421	Xenopus_tropicalis
FBgn0032346	Csl4	55	56.522	ENSXCOG00000014499	exosc1	85	56.522	Xiphophorus_couchianus
FBgn0032346	Csl4	97	43.216	ENSXMAG00000023382	exosc1	94	43.216	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	IDA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	ISS	Component
GO:0000178	exosome (RNase complex)	12483225.	IDA	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	16407406.	IDA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0010468	regulation of gene expression	20185544.	IMP	Process
GO:0035327	transcriptionally active chromatin	12490954.	IDA	Component