EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0032781 (Gene tree)
Gene ID: 35220
Gene Symbol: RtcB
Alias: -
Full Name: RtcB-like
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 1802 bases
Position: chr2L:19430643-19432444
Accession: FBgn0032781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080746	RtcB	PF01139.17	7e-148	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0081205	-	1742	-	FBpp0080746	506 (aa)	-	Q9VIW7

Gene Model

Click here to download FBgn0032781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0032781's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0032781	RtcB	99	85.487	ENSG00000100220	RTCB	99	85.487	Homo_sapiens
FBgn0032781	RtcB	99	85.089	ENSAPOG00000006040	rtcb	99	85.089	Acanthochromis_polyacanthus
FBgn0032781	RtcB	99	85.288	ENSAMEG00000016152	RTCB	99	85.288	Ailuropoda_melanoleuca
FBgn0032781	RtcB	99	81.113	ENSACIG00000009083	rtcb	99	81.113	Amphilophus_citrinellus
FBgn0032781	RtcB	99	85.288	ENSAOCG00000005662	rtcb	100	86.957	Amphiprion_ocellaris
FBgn0032781	RtcB	96	81.725	ENSAPEG00000024653	rtcb	100	81.725	Amphiprion_percula
FBgn0032781	RtcB	99	85.288	ENSAPEG00000024701	rtcb	99	85.288	Amphiprion_percula
FBgn0032781	RtcB	99	85.288	ENSATEG00000000618	rtcb	99	85.288	Anabas_testudineus
FBgn0032781	RtcB	99	83.366	ENSACAG00000014817	RTCB	99	83.366	Anolis_carolinensis
FBgn0032781	RtcB	72	83.333	ENSANAG00000023724	-	83	83.333	Aotus_nancymaae
FBgn0032781	RtcB	99	72.255	ENSANAG00000018191	-	90	72.255	Aotus_nancymaae
FBgn0032781	RtcB	99	85.089	ENSACLG00000008367	rtcb	100	86.739	Astatotilapia_calliptera
FBgn0032781	RtcB	99	83.897	ENSAMXG00000042320	rtcb	99	83.897	Astyanax_mexicanus
FBgn0032781	RtcB	99	85.686	ENSBTAG00000011070	RTCB	99	85.686	Bos_taurus
FBgn0032781	RtcB	99	74.950	WBGene00008877	rtcb-1	99	74.950	Caenorhabditis_elegans
FBgn0032781	RtcB	99	85.487	ENSCJAG00000006128	RTCB	99	85.487	Callithrix_jacchus
FBgn0032781	RtcB	99	81.511	ENSCAFG00000010789	-	99	81.511	Canis_familiaris
FBgn0032781	RtcB	99	85.288	ENSCAFG00000001785	RTCB	99	85.288	Canis_familiaris
FBgn0032781	RtcB	99	85.288	ENSCAFG00020004890	-	99	85.288	Canis_lupus_dingo
FBgn0032781	RtcB	87	82.192	ENSCAFG00020018953	-	99	82.192	Canis_lupus_dingo
FBgn0032781	RtcB	99	85.487	ENSCHIG00000027009	-	99	85.487	Capra_hircus
FBgn0032781	RtcB	99	85.288	ENSTSYG00000012320	RTCB	99	85.288	Carlito_syrichta
FBgn0032781	RtcB	94	86.287	ENSCAPG00000011647	RTCB	96	86.287	Cavia_aperea
FBgn0032781	RtcB	99	85.487	ENSCCAG00000000618	RTCB	99	85.487	Cebus_capucinus
FBgn0032781	RtcB	99	85.487	ENSCATG00000033424	RTCB	99	85.487	Cercocebus_atys
FBgn0032781	RtcB	99	85.686	ENSCLAG00000007997	RTCB	99	85.686	Chinchilla_lanigera
FBgn0032781	RtcB	99	85.487	ENSCSAG00000008351	RTCB	99	85.487	Chlorocebus_sabaeus
FBgn0032781	RtcB	99	72.565	ENSCHOG00000009123	RTCB	99	72.565	Choloepus_hoffmanni
FBgn0032781	RtcB	99	85.089	ENSCPBG00000023184	RTCB	99	85.089	Chrysemys_picta_bellii
FBgn0032781	RtcB	99	79.523	ENSCING00000003830	-	99	79.523	Ciona_intestinalis
FBgn0032781	RtcB	99	79.125	ENSCSAVG00000008124	-	100	78.132	Ciona_savignyi
FBgn0032781	RtcB	99	82.306	ENSCANG00000001891	RTCB	99	82.306	Colobus_angolensis_palliatus
FBgn0032781	RtcB	99	85.089	ENSCGRG00001011173	Rtcb	99	85.089	Cricetulus_griseus_chok1gshd
FBgn0032781	RtcB	99	81.944	ENSCGRG00000009587	-	99	81.944	Cricetulus_griseus_crigri
FBgn0032781	RtcB	99	84.692	ENSCSEG00000003986	rtcb	99	84.692	Cynoglossus_semilaevis
FBgn0032781	RtcB	81	87.073	ENSCVAG00000000569	rtcb	93	87.073	Cyprinodon_variegatus
FBgn0032781	RtcB	99	84.493	ENSDARG00000101047	rtcb	99	84.493	Danio_rerio
FBgn0032781	RtcB	80	82.222	ENSDNOG00000012425	RTCB	99	82.222	Dasypus_novemcinctus
FBgn0032781	RtcB	99	84.692	ENSDORG00000010855	Rtcb	99	84.692	Dipodomys_ordii
FBgn0032781	RtcB	99	80.119	ENSETEG00000001988	RTCB	99	80.119	Echinops_telfairi
FBgn0032781	RtcB	99	77.336	ENSEBUG00000014235	rtcb	99	77.336	Eptatretus_burgeri
FBgn0032781	RtcB	99	85.288	ENSEASG00005019059	RTCB	99	85.288	Equus_asinus_asinus
FBgn0032781	RtcB	99	85.288	ENSECAG00000023998	RTCB	99	85.288	Equus_caballus
FBgn0032781	RtcB	88	79.418	ENSEEUG00000006251	RTCB	100	79.418	Erinaceus_europaeus
FBgn0032781	RtcB	99	73.624	ENSELUG00000009275	rtcb	99	73.624	Esox_lucius
FBgn0032781	RtcB	99	85.487	ENSFCAG00000026480	RTCB	99	85.487	Felis_catus
FBgn0032781	RtcB	99	85.487	ENSFALG00000013334	RTCB	99	85.487	Ficedula_albicollis
FBgn0032781	RtcB	99	85.288	ENSFDAG00000018150	RTCB	99	85.288	Fukomys_damarensis
FBgn0032781	RtcB	99	84.891	ENSFHEG00000009595	rtcb	99	84.891	Fundulus_heteroclitus
FBgn0032781	RtcB	99	82.772	ENSGMOG00000018882	rtcb	100	82.772	Gadus_morhua
FBgn0032781	RtcB	99	85.885	ENSGALG00000012611	RTCB	99	85.885	Gallus_gallus
FBgn0032781	RtcB	99	85.288	ENSGAFG00000004198	rtcb	99	85.288	Gambusia_affinis
FBgn0032781	RtcB	99	84.095	ENSGACG00000000586	rtcb	99	84.095	Gasterosteus_aculeatus
FBgn0032781	RtcB	92	84.402	ENSGAGG00000019133	RTCB	97	84.402	Gopherus_agassizii
FBgn0032781	RtcB	99	85.487	ENSGGOG00000011402	RTCB	99	85.487	Gorilla_gorilla
FBgn0032781	RtcB	99	85.089	ENSHBUG00000020571	rtcb	99	85.089	Haplochromis_burtoni
FBgn0032781	RtcB	93	60.554	ENSHGLG00000001066	-	99	60.341	Heterocephalus_glaber_female
FBgn0032781	RtcB	99	85.288	ENSHGLG00000004492	RTCB	99	85.288	Heterocephalus_glaber_female
FBgn0032781	RtcB	99	85.288	ENSHGLG00100008965	RTCB	99	85.288	Heterocephalus_glaber_male
FBgn0032781	RtcB	99	83.960	ENSHCOG00000006450	rtcb	99	83.960	Hippocampus_comes
FBgn0032781	RtcB	99	84.493	ENSIPUG00000015443	rtcb	99	84.493	Ictalurus_punctatus
FBgn0032781	RtcB	99	85.487	ENSSTOG00000003878	RTCB	99	85.487	Ictidomys_tridecemlineatus
FBgn0032781	RtcB	99	85.288	ENSJJAG00000010667	Rtcb	99	85.288	Jaculus_jaculus
FBgn0032781	RtcB	99	85.885	ENSKMAG00000013178	rtcb	99	85.885	Kryptolebias_marmoratus
FBgn0032781	RtcB	99	84.493	ENSLBEG00000000214	rtcb	99	84.493	Labrus_bergylta
FBgn0032781	RtcB	99	85.487	ENSLBEG00000010566	RTCB	99	85.487	Labrus_bergylta
FBgn0032781	RtcB	99	84.493	ENSLACG00000013033	RTCB	99	84.493	Latimeria_chalumnae
FBgn0032781	RtcB	99	84.294	ENSLOCG00000016515	rtcb	99	84.294	Lepisosteus_oculatus
FBgn0032781	RtcB	99	85.089	ENSLAFG00000002082	RTCB	99	85.089	Loxodonta_africana
FBgn0032781	RtcB	99	85.487	ENSMFAG00000034419	RTCB	99	85.487	Macaca_fascicularis
FBgn0032781	RtcB	99	85.487	ENSMMUG00000006720	RTCB	99	85.487	Macaca_mulatta
FBgn0032781	RtcB	99	85.487	ENSMNEG00000040669	RTCB	99	85.487	Macaca_nemestrina
FBgn0032781	RtcB	99	85.487	ENSMLEG00000040505	RTCB	99	85.487	Mandrillus_leucophaeus
FBgn0032781	RtcB	99	85.288	ENSMAMG00000020676	rtcb	99	85.288	Mastacembelus_armatus
FBgn0032781	RtcB	99	85.089	ENSMZEG00005018942	rtcb	99	85.089	Maylandia_zebra
FBgn0032781	RtcB	99	85.545	ENSMGAG00000012805	RTCB	99	85.545	Meleagris_gallopavo
FBgn0032781	RtcB	59	88.496	ENSMAUG00000008301	Rtcb	100	88.496	Mesocricetus_auratus
FBgn0032781	RtcB	99	85.487	ENSMICG00000013303	-	99	85.487	Microcebus_murinus
FBgn0032781	RtcB	99	67.460	ENSMICG00000036677	-	100	67.460	Microcebus_murinus
FBgn0032781	RtcB	99	85.288	ENSMOCG00000002440	Rtcb	99	85.288	Microtus_ochrogaster
FBgn0032781	RtcB	99	85.686	ENSMMOG00000005987	rtcb	99	85.686	Mola_mola
FBgn0032781	RtcB	99	85.288	ENSMODG00000001414	RTCB	99	85.288	Monodelphis_domestica
FBgn0032781	RtcB	99	85.288	ENSMALG00000007603	rtcb	99	85.288	Monopterus_albus
FBgn0032781	RtcB	99	85.288	MGP_CAROLIEiJ_G0015689	Rtcb	99	85.288	Mus_caroli
FBgn0032781	RtcB	99	85.288	ENSMUSG00000001783	Rtcb	99	85.288	Mus_musculus
FBgn0032781	RtcB	99	85.288	MGP_PahariEiJ_G0031396	Rtcb	99	85.288	Mus_pahari
FBgn0032781	RtcB	99	85.288	MGP_SPRETEiJ_G0016507	Rtcb	99	85.288	Mus_spretus
FBgn0032781	RtcB	99	85.288	ENSMPUG00000012285	RTCB	99	85.288	Mustela_putorius_furo
FBgn0032781	RtcB	99	83.564	ENSMLUG00000007803	RTCB	99	83.564	Myotis_lucifugus
FBgn0032781	RtcB	72	86.667	ENSNGAG00000005093	Rtcb	99	86.667	Nannospalax_galili
FBgn0032781	RtcB	99	84.891	ENSNBRG00000017202	rtcb	99	84.891	Neolamprologus_brichardi
FBgn0032781	RtcB	99	85.487	ENSNLEG00000004960	RTCB	99	85.487	Nomascus_leucogenys
FBgn0032781	RtcB	99	62.624	ENSMEUG00000007809	-	99	62.624	Notamacropus_eugenii
FBgn0032781	RtcB	73	87.500	ENSOPRG00000003488	RTCB	78	87.500	Ochotona_princeps
FBgn0032781	RtcB	99	57.228	ENSODEG00000005042	-	100	57.228	Octodon_degus
FBgn0032781	RtcB	75	87.736	ENSODEG00000013033	-	100	87.736	Octodon_degus
FBgn0032781	RtcB	99	84.692	ENSONIG00000007474	rtcb	99	84.692	Oreochromis_niloticus
FBgn0032781	RtcB	99	85.089	ENSOANG00000005524	RTCB	99	85.089	Ornithorhynchus_anatinus
FBgn0032781	RtcB	92	85.684	ENSOCUG00000008270	RTCB	96	85.684	Oryctolagus_cuniculus
FBgn0032781	RtcB	99	85.288	ENSORLG00000020093	rtcb	99	85.288	Oryzias_latipes
FBgn0032781	RtcB	99	85.089	ENSORLG00020003706	rtcb	99	85.654	Oryzias_latipes_hni
FBgn0032781	RtcB	99	85.288	ENSORLG00015002968	rtcb	99	85.288	Oryzias_latipes_hsok
FBgn0032781	RtcB	99	84.891	ENSOMEG00000021278	rtcb	99	84.891	Oryzias_melastigma
FBgn0032781	RtcB	99	85.089	ENSOGAG00000001425	RTCB	99	85.089	Otolemur_garnettii
FBgn0032781	RtcB	99	85.487	ENSOARG00000018008	RTCB	99	85.487	Ovis_aries
FBgn0032781	RtcB	99	85.487	ENSPPAG00000028667	RTCB	99	85.487	Pan_paniscus
FBgn0032781	RtcB	99	85.487	ENSPPRG00000004038	RTCB	99	85.487	Panthera_pardus
FBgn0032781	RtcB	94	82.947	ENSPTIG00000020499	RTCB	97	82.489	Panthera_tigris_altaica
FBgn0032781	RtcB	99	85.487	ENSPTRG00000014287	RTCB	99	85.487	Pan_troglodytes
FBgn0032781	RtcB	99	85.487	ENSPANG00000016035	RTCB	99	85.487	Papio_anubis
FBgn0032781	RtcB	99	83.499	ENSPKIG00000001881	rtcb	99	83.499	Paramormyrops_kingsleyae
FBgn0032781	RtcB	91	86.304	ENSPSIG00000011690	RTCB	100	86.304	Pelodiscus_sinensis
FBgn0032781	RtcB	99	84.891	ENSPMGG00000016672	rtcb	99	84.891	Periophthalmus_magnuspinnatus
FBgn0032781	RtcB	99	85.288	ENSPEMG00000019548	Rtcb	99	85.288	Peromyscus_maniculatus_bairdii
FBgn0032781	RtcB	99	83.897	ENSPMAG00000005657	rtcb	99	83.897	Petromyzon_marinus
FBgn0032781	RtcB	99	85.288	ENSPCIG00000009467	RTCB	99	85.288	Phascolarctos_cinereus
FBgn0032781	RtcB	99	85.487	ENSPFOG00000003058	rtcb	99	85.487	Poecilia_formosa
FBgn0032781	RtcB	99	85.288	ENSPLAG00000017663	rtcb	99	85.288	Poecilia_latipinna
FBgn0032781	RtcB	99	85.487	ENSPMEG00000006227	rtcb	99	85.487	Poecilia_mexicana
FBgn0032781	RtcB	99	85.288	ENSPREG00000018467	rtcb	99	85.288	Poecilia_reticulata
FBgn0032781	RtcB	99	85.487	ENSPPYG00000011752	RTCB	99	85.487	Pongo_abelii
FBgn0032781	RtcB	92	70.213	ENSPCAG00000013641	RTCB	99	70.213	Procavia_capensis
FBgn0032781	RtcB	99	85.686	ENSPCOG00000017243	RTCB	99	85.686	Propithecus_coquereli
FBgn0032781	RtcB	92	84.829	ENSPVAG00000002380	RTCB	99	84.829	Pteropus_vampyrus
FBgn0032781	RtcB	99	85.089	ENSPNYG00000022760	rtcb	99	85.089	Pundamilia_nyererei
FBgn0032781	RtcB	99	84.095	ENSPNAG00000009209	rtcb	99	84.095	Pygocentrus_nattereri
FBgn0032781	RtcB	99	85.288	ENSRNOG00000004813	Rtcb	99	85.288	Rattus_norvegicus
FBgn0032781	RtcB	99	77.579	ENSRBIG00000042090	RTCB	99	77.579	Rhinopithecus_bieti
FBgn0032781	RtcB	99	81.909	ENSSBOG00000020085	-	99	81.909	Saimiri_boliviensis_boliviensis
FBgn0032781	RtcB	94	86.498	ENSSHAG00000016277	RTCB	100	86.498	Sarcophilus_harrisii
FBgn0032781	RtcB	99	82.306	ENSSFOG00015011572	RTCB	99	82.306	Scleropages_formosus
FBgn0032781	RtcB	99	84.095	ENSSFOG00015000763	rtcb	99	84.095	Scleropages_formosus
FBgn0032781	RtcB	99	82.107	ENSSMAG00000005096	rtcb	99	82.107	Scophthalmus_maximus
FBgn0032781	RtcB	99	84.493	ENSSDUG00000012605	rtcb	99	84.493	Seriola_dumerili
FBgn0032781	RtcB	99	84.692	ENSSLDG00000019458	rtcb	99	84.692	Seriola_lalandi_dorsalis
FBgn0032781	RtcB	66	85.714	ENSSARG00000004799	-	70	85.714	Sorex_araneus
FBgn0032781	RtcB	99	84.891	ENSSPUG00000012814	RTCB	99	84.891	Sphenodon_punctatus
FBgn0032781	RtcB	99	85.288	ENSSPAG00000004623	rtcb	99	85.288	Stegastes_partitus
FBgn0032781	RtcB	99	85.487	ENSSSCG00000000158	RTCB	99	85.487	Sus_scrofa
FBgn0032781	RtcB	99	85.487	ENSTGUG00000010947	RTCB	99	85.487	Taeniopygia_guttata
FBgn0032781	RtcB	91	86.304	ENSTRUG00000009880	rtcb	100	86.304	Takifugu_rubripes
FBgn0032781	RtcB	99	84.095	ENSTNIG00000002484	rtcb	99	84.095	Tetraodon_nigroviridis
FBgn0032781	RtcB	99	74.354	ENSTBEG00000004418	RTCB	99	74.354	Tupaia_belangeri
FBgn0032781	RtcB	92	85.684	ENSTTRG00000006417	RTCB	99	85.684	Tursiops_truncatus
FBgn0032781	RtcB	99	85.288	ENSUAMG00000022792	RTCB	99	85.288	Ursus_americanus
FBgn0032781	RtcB	99	85.288	ENSUMAG00000017225	RTCB	99	85.288	Ursus_maritimus
FBgn0032781	RtcB	99	85.487	ENSVPAG00000005375	RTCB	99	85.487	Vicugna_pacos
FBgn0032781	RtcB	99	85.288	ENSVVUG00000023408	RTCB	100	87.469	Vulpes_vulpes
FBgn0032781	RtcB	99	83.897	ENSXETG00000011523	rtcb	99	83.897	Xenopus_tropicalis
FBgn0032781	RtcB	99	85.288	ENSXMAG00000002855	rtcb	99	85.288	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000971	tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	21873635.	IBA	Process
GO:0003972	RNA ligase (ATP) activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	21873635.	IBA	Process
GO:0072669	tRNA-splicing ligase complex	21873635.	IBA	Component
GO:2000237	positive regulation of tRNA processing	26194134.	IMP	Process