EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0033005 (Gene tree)
Gene ID: 35475
Gene Symbol: CG3107
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 4510
Position: chr2R: 5090581-5095090
Accession
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0086077	-	3230	-	FBpp0085413	1034 (aa)	-	Q9V9E3
FBtr0111280	-	3156	-	FBpp0110537	1034 (aa)	-	Q9V9E3
FBtr0345009	-	3966	-	FBpp0311260	1034 (aa)	-	Q9V9E3
FBtr0086078	-	3331	-	FBpp0085414	1034 (aa)	-	Q9V9E3

Gene Model

Click here to download FBgn0033005's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0033005's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0033005	CG3107	94	39.010	ENSG00000107959	PITRM1	97	39.010	Homo_sapiens
FBgn0033005	CG3107	94	40.258	ENSMUSG00000021193	Pitrm1	97	40.258	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004222	metalloendopeptidase activity	21873635.	IBA	Function
GO:0004222	metalloendopeptidase activity	-	ISS	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005759	mitochondrial matrix	21873635.	IBA	Component
GO:0005759	mitochondrial matrix	-	ISS	Component
GO:0006508	proteolysis	-	ISS	Process
GO:0016485	protein processing	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function