EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0033029 (Gene tree)
Gene ID: 35501
Gene Symbol: Not3
Alias: -
Full Name: CCR4-NOT transcription complex subunit 3
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 6817 bases
Position: chr2R:5656406-5663222
Accession: FBgn0033029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085398	Not3	PF04065.15	1.6e-87	1	1
FBpp0304299	Not3	PF04065.15	1.6e-87	1	1
FBpp0085398	NOT2_3_5	PF04153.18	1.3e-38	1	1
FBpp0304299	NOT2_3_5	PF04153.18	1.3e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0086062	-	3406	-	FBpp0085398	844 (aa)	-	Q7K126
FBtr0331970	-	3919	-	FBpp0304299	844 (aa)	-	Q7K126

Gene Model

Click here to download FBgn0033029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0033029's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0033029	Not3	51	66.111	ENSG00000088038	CNOT3	99	71.264	Homo_sapiens
FBgn0033029	Not3	51	65.556	ENSAMEG00000004528	CNOT3	61	65.556	Ailuropoda_melanoleuca
FBgn0033029	Not3	50	67.251	ENSACIG00000006635	cnot3a	69	68.421	Amphilophus_citrinellus
FBgn0033029	Not3	58	67.857	ENSAOCG00000018385	-	64	67.857	Amphiprion_ocellaris
FBgn0033029	Not3	56	67.857	ENSAPEG00000002640	cnot3b	70	67.857	Amphiprion_percula
FBgn0033029	Not3	52	64.961	ENSACAG00000016085	CNOT3	64	64.021	Anolis_carolinensis
FBgn0033029	Not3	51	66.111	ENSANAG00000025756	CNOT3	63	66.111	Aotus_nancymaae
FBgn0033029	Not3	50	67.323	ENSACLG00000021136	cnot3a	50	66.667	Astatotilapia_calliptera
FBgn0033029	Not3	51	66.111	ENSBTAG00000014900	CNOT3	61	66.111	Bos_taurus
FBgn0033029	Not3	51	66.111	ENSCJAG00000001094	CNOT3	60	66.111	Callithrix_jacchus
FBgn0033029	Not3	50	66.111	ENSCHIG00000015302	CNOT3	61	66.111	Capra_hircus
FBgn0033029	Not3	51	66.111	ENSTSYG00000008058	CNOT3	61	66.111	Carlito_syrichta
FBgn0033029	Not3	51	66.111	ENSCAPG00000009533	CNOT3	61	66.111	Cavia_aperea
FBgn0033029	Not3	51	66.111	ENSCPOG00000020741	CNOT3	61	66.111	Cavia_porcellus
FBgn0033029	Not3	51	66.111	ENSCCAG00000036290	CNOT3	63	66.111	Cebus_capucinus
FBgn0033029	Not3	51	66.111	ENSCATG00000030324	CNOT3	61	66.111	Cercocebus_atys
FBgn0033029	Not3	51	66.111	ENSCLAG00000003302	CNOT3	99	76.543	Chinchilla_lanigera
FBgn0033029	Not3	51	66.111	ENSCSAG00000001900	CNOT3	61	66.111	Chlorocebus_sabaeus
FBgn0033029	Not3	50	69.461	ENSCING00000000293	-	60	68.208	Ciona_intestinalis
FBgn0033029	Not3	51	66.111	ENSCANG00000013408	CNOT3	61	66.111	Colobus_angolensis_palliatus
FBgn0033029	Not3	51	67.429	ENSCGRG00001000855	Cnot3	60	67.429	Cricetulus_griseus_chok1gshd
FBgn0033029	Not3	50	67.857	ENSCSEG00000016892	cnot3b	62	65.537	Cynoglossus_semilaevis
FBgn0033029	Not3	50	67.460	ENSCVAG00000008168	cnot3a	50	67.251	Cyprinodon_variegatus
FBgn0033029	Not3	51	68.000	ENSDORG00000008021	Cnot3	99	72.093	Dipodomys_ordii
FBgn0033029	Not3	51	66.111	ENSEASG00005021591	CNOT3	60	66.111	Equus_asinus_asinus
FBgn0033029	Not3	51	66.111	ENSECAG00000023181	CNOT3	60	66.111	Equus_caballus
FBgn0033029	Not3	51	66.111	ENSFCAG00000014042	CNOT3	61	66.111	Felis_catus
FBgn0033029	Not3	55	67.251	ENSFHEG00000023166	cnot3a	68	67.251	Fundulus_heteroclitus
FBgn0033029	Not3	52	63.874	ENSGAGG00000012677	CNOT3	64	63.874	Gopherus_agassizii
FBgn0033029	Not3	51	66.111	ENSGGOG00000012996	CNOT3	63	66.111	Gorilla_gorilla
FBgn0033029	Not3	50	67.323	ENSHBUG00000005275	cnot3a	50	66.667	Haplochromis_burtoni
FBgn0033029	Not3	51	65.193	ENSHGLG00000008821	CNOT3	99	72.093	Heterocephalus_glaber_female
FBgn0033029	Not3	50	67.857	ENSHCOG00000020968	cnot3a	52	64.130	Hippocampus_comes
FBgn0033029	Not3	51	66.111	ENSSTOG00000028248	CNOT3	95	66.111	Ictidomys_tridecemlineatus
FBgn0033029	Not3	51	66.111	ENSJJAG00000014594	Cnot3	100	71.264	Jaculus_jaculus
FBgn0033029	Not3	53	70.940	ENSKMAG00000004863	cnot3a	75	62.847	Kryptolebias_marmoratus
FBgn0033029	Not3	50	66.279	ENSLBEG00000018278	cnot3b	51	66.279	Labrus_bergylta
FBgn0033029	Not3	50	66.929	ENSLBEG00000017296	cnot3a	61	66.082	Labrus_bergylta
FBgn0033029	Not3	51	63.529	ENSLAFG00000022133	CNOT3	59	61.538	Loxodonta_africana
FBgn0033029	Not3	51	66.111	ENSMFAG00000040073	CNOT3	61	66.111	Macaca_fascicularis
FBgn0033029	Not3	51	65.000	ENSMNEG00000036750	CNOT3	61	65.000	Macaca_nemestrina
FBgn0033029	Not3	51	63.780	ENSMLEG00000036579	CNOT3	60	60.071	Mandrillus_leucophaeus
FBgn0033029	Not3	51	66.142	ENSMAMG00000019397	cnot3a	50	63.388	Mastacembelus_armatus
FBgn0033029	Not3	50	67.323	ENSMZEG00005016304	cnot3a	50	66.667	Maylandia_zebra
FBgn0033029	Not3	51	67.429	ENSMAUG00000014996	Cnot3	94	67.429	Mesocricetus_auratus
FBgn0033029	Not3	51	66.667	ENSMICG00000002370	CNOT3	60	66.667	Microcebus_murinus
FBgn0033029	Not3	50	68.263	MGP_CAROLIEiJ_G0029095	Cnot3	100	80.952	Mus_caroli
FBgn0033029	Not3	50	68.263	ENSMUSG00000035632	Cnot3	100	80.952	Mus_musculus
FBgn0033029	Not3	50	68.263	MGP_PahariEiJ_G0020964	Cnot3	100	80.952	Mus_pahari
FBgn0033029	Not3	50	68.263	MGP_SPRETEiJ_G0030148	Cnot3	100	80.952	Mus_spretus
FBgn0033029	Not3	51	66.111	ENSMPUG00000010352	CNOT3	61	66.111	Mustela_putorius_furo
FBgn0033029	Not3	51	66.111	ENSNGAG00000013266	Cnot3	95	66.111	Nannospalax_galili
FBgn0033029	Not3	50	67.323	ENSNBRG00000002401	cnot3a	50	66.667	Neolamprologus_brichardi
FBgn0033029	Not3	50	68.293	ENSNBRG00000003336	cnot3b	68	67.262	Neolamprologus_brichardi
FBgn0033029	Not3	51	66.111	ENSODEG00000000705	CNOT3	99	79.487	Octodon_degus
FBgn0033029	Not3	51	66.111	ENSOCUG00000007691	CNOT3	61	66.111	Oryctolagus_cuniculus
FBgn0033029	Not3	50	67.451	ENSOMEG00000010309	cnot3a	62	66.667	Oryzias_melastigma
FBgn0033029	Not3	51	66.111	ENSOGAG00000006945	CNOT3	61	66.111	Otolemur_garnettii
FBgn0033029	Not3	51	66.111	ENSPPAG00000002748	CNOT3	63	66.111	Pan_paniscus
FBgn0033029	Not3	51	66.111	ENSPPRG00000011705	CNOT3	61	66.111	Panthera_pardus
FBgn0033029	Not3	51	66.111	ENSPTIG00000008781	CNOT3	78	66.111	Panthera_tigris_altaica
FBgn0033029	Not3	51	66.111	ENSPTRG00000046717	-	63	66.111	Pan_troglodytes
FBgn0033029	Not3	51	66.111	ENSPTRG00000011444	CNOT3	63	66.111	Pan_troglodytes
FBgn0033029	Not3	51	66.111	ENSPANG00000009375	CNOT3	61	66.111	Papio_anubis
FBgn0033029	Not3	51	65.556	ENSPEMG00000024185	Cnot3	61	65.556	Peromyscus_maniculatus_bairdii
FBgn0033029	Not3	51	65.556	ENSPCIG00000023018	CNOT3	93	65.556	Phascolarctos_cinereus
FBgn0033029	Not3	50	67.251	ENSPFOG00000008693	cnot3a	58	67.251	Poecilia_formosa
FBgn0033029	Not3	51	66.111	ENSPCOG00000017673	CNOT3	62	66.111	Propithecus_coquereli
FBgn0033029	Not3	50	67.323	ENSPNYG00000002282	cnot3a	50	66.667	Pundamilia_nyererei
FBgn0033029	Not3	50	67.066	ENSPNAG00000017679	cnot3a	55	70.513	Pygocentrus_nattereri
FBgn0033029	Not3	50	68.263	ENSRNOG00000053234	Cnot3	59	69.512	Rattus_norvegicus
FBgn0033029	Not3	51	66.111	ENSSBOG00000030268	CNOT3	95	66.111	Saimiri_boliviensis_boliviensis
FBgn0033029	Not3	53	80.000	ENSSHAG00000009131	-	57	80.000	Sarcophilus_harrisii
FBgn0033029	Not3	50	66.667	ENSSFOG00015000248	cnot3	50	66.667	Scleropages_formosus
FBgn0033029	Not3	50	67.331	ENSSMAG00000013235	cnot3a	50	66.082	Scophthalmus_maximus
FBgn0033029	Not3	50	66.667	ENSSDUG00000008181	cnot3a	69	68.016	Seriola_dumerili
FBgn0033029	Not3	50	67.323	ENSSPAG00000003858	cnot3a	53	66.082	Stegastes_partitus
FBgn0033029	Not3	51	66.111	ENSUAMG00000005234	CNOT3	61	66.111	Ursus_americanus
FBgn0033029	Not3	51	66.111	ENSVVUG00000008239	CNOT3	56	66.111	Vulpes_vulpes
FBgn0033029	Not3	53	63.137	ENSXETG00000003166	cnot3	64	62.304	Xenopus_tropicalis
FBgn0033029	Not3	55	67.630	ENSXCOG00000019460	cnot3a	76	67.630	Xiphophorus_couchianus
FBgn0033029	Not3	50	67.630	ENSXMAG00000012273	cnot3a	50	67.630	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	20504953.	IMP	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0004535	poly(A)-specific ribonuclease activity	20504953.	IDA	Function
GO:0005515	protein binding	21981923.30279526.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	20504953.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006402	mRNA catabolic process	23303381.	IDA	Process
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0017148	negative regulation of translation	23303381.	IDA	Process
GO:0030014	CCR4-NOT complex	20504953.	IDA	Component
GO:0030015	CCR4-NOT core complex	21873635.	IBA	Component