EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0033556 (Gene tree)
Gene ID: 36143
Gene Symbol: CG12343
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 973 bases
Position: chr2R:10822400-10823372
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087342	SYF2	PF08231.12	1.6e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0088247	-	973	-	FBpp0087342	226 (aa)	-	Q9V5Q4

Gene Model

Click here to download FBgn0033556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0033556's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0033556	CG12343	92	58.454	ENSG00000117614	SYF2	90	56.818	Homo_sapiens
FBgn0033556	CG12343	97	55.909	ENSAPOG00000001174	syf2	92	55.909	Acanthochromis_polyacanthus
FBgn0033556	CG12343	86	58.763	ENSAMEG00000010134	-	98	58.763	Ailuropoda_melanoleuca
FBgn0033556	CG12343	97	56.818	ENSAMEG00000010115	-	90	56.818	Ailuropoda_melanoleuca
FBgn0033556	CG12343	94	56.481	ENSACIG00000023688	syf2	86	56.481	Amphilophus_citrinellus
FBgn0033556	CG12343	91	53.883	ENSAOCG00000010912	syf2	64	53.883	Amphiprion_ocellaris
FBgn0033556	CG12343	97	55.909	ENSAOCG00000022046	syf2	93	55.909	Amphiprion_ocellaris
FBgn0033556	CG12343	97	55.909	ENSAPEG00000018858	syf2	84	55.909	Amphiprion_percula
FBgn0033556	CG12343	94	56.019	ENSATEG00000007745	syf2	94	54.825	Anabas_testudineus
FBgn0033556	CG12343	88	60.500	ENSAPLG00000016435	SYF2	99	60.500	Anas_platyrhynchos
FBgn0033556	CG12343	88	59.500	ENSACAG00000013653	-	97	59.500	Anolis_carolinensis
FBgn0033556	CG12343	67	54.902	ENSACAG00000026777	-	90	54.902	Anolis_carolinensis
FBgn0033556	CG12343	92	58.937	ENSANAG00000032473	SYF2	90	57.273	Aotus_nancymaae
FBgn0033556	CG12343	94	56.481	ENSACLG00000019916	syf2	90	56.481	Astatotilapia_calliptera
FBgn0033556	CG12343	97	55.455	ENSAMXG00000004051	syf2	92	55.455	Astyanax_mexicanus
FBgn0033556	CG12343	97	56.364	ENSBTAG00000001651	SYF2	92	56.364	Bos_taurus
FBgn0033556	CG12343	96	46.330	WBGene00019402	syf-2	94	45.495	Caenorhabditis_elegans
FBgn0033556	CG12343	96	56.881	ENSCJAG00000046570	SYF2	90	57.273	Callithrix_jacchus
FBgn0033556	CG12343	96	56.422	ENSCAFG00000012895	-	89	56.818	Canis_familiaris
FBgn0033556	CG12343	91	54.854	ENSCAFG00000030331	-	89	54.854	Canis_familiaris
FBgn0033556	CG12343	70	58.491	ENSCAFG00020021094	-	83	58.491	Canis_lupus_dingo
FBgn0033556	CG12343	96	56.422	ENSCAFG00020021091	-	89	56.818	Canis_lupus_dingo
FBgn0033556	CG12343	97	56.818	ENSCHIG00000020874	SYF2	90	56.818	Capra_hircus
FBgn0033556	CG12343	97	55.909	ENSTSYG00000005114	SYF2	90	55.909	Carlito_syrichta
FBgn0033556	CG12343	88	59.799	ENSCAPG00000010006	SYF2	99	59.799	Cavia_aperea
FBgn0033556	CG12343	99	56.522	ENSCPOG00000005326	SYF2	93	56.522	Cavia_porcellus
FBgn0033556	CG12343	92	58.937	ENSCCAG00000022459	SYF2	90	57.273	Cebus_capucinus
FBgn0033556	CG12343	99	53.043	ENSCATG00000026917	SYF2	94	54.783	Cercocebus_atys
FBgn0033556	CG12343	99	56.522	ENSCLAG00000008474	SYF2	93	56.522	Chinchilla_lanigera
FBgn0033556	CG12343	97	54.091	ENSCSAG00000000948	SYF2	90	55.909	Chlorocebus_sabaeus
FBgn0033556	CG12343	75	40.230	ENSCHOG00000005273	-	95	40.230	Choloepus_hoffmanni
FBgn0033556	CG12343	98	58.407	ENSCPBG00000025073	SYF2	92	57.826	Chrysemys_picta_bellii
FBgn0033556	CG12343	93	49.528	ENSCING00000003017	-	88	49.528	Ciona_intestinalis
FBgn0033556	CG12343	93	50.237	ENSCSAVG00000006627	-	96	50.237	Ciona_savignyi
FBgn0033556	CG12343	97	49.545	ENSCANG00000037322	SYF2	88	51.364	Colobus_angolensis_palliatus
FBgn0033556	CG12343	97	57.273	ENSCGRG00001020733	Syf2	90	57.273	Cricetulus_griseus_chok1gshd
FBgn0033556	CG12343	86	58.974	ENSCGRG00000005095	Syf2	96	59.000	Cricetulus_griseus_crigri
FBgn0033556	CG12343	94	53.241	ENSCSEG00000000117	syf2	90	53.241	Cynoglossus_semilaevis
FBgn0033556	CG12343	97	55.909	ENSCVAG00000019543	syf2	91	55.909	Cyprinodon_variegatus
FBgn0033556	CG12343	97	55.455	ENSDARG00000004706	syf2	92	55.455	Danio_rerio
FBgn0033556	CG12343	99	56.087	ENSDNOG00000047605	SYF2	93	56.087	Dasypus_novemcinctus
FBgn0033556	CG12343	97	57.273	ENSDORG00000001274	Syf2	89	57.273	Dipodomys_ordii
FBgn0033556	CG12343	91	48.544	ENSETEG00000015729	SYF2	89	48.544	Echinops_telfairi
FBgn0033556	CG12343	88	45.729	ENSEBUG00000015402	syf2	95	45.729	Eptatretus_burgeri
FBgn0033556	CG12343	97	58.182	ENSEASG00005004224	-	89	58.182	Equus_asinus_asinus
FBgn0033556	CG12343	97	53.636	ENSEASG00005004232	-	90	53.636	Equus_asinus_asinus
FBgn0033556	CG12343	97	57.727	ENSECAG00000012023	-	89	57.727	Equus_caballus
FBgn0033556	CG12343	97	58.182	ENSECAG00000010440	-	91	58.182	Equus_caballus
FBgn0033556	CG12343	70	45.000	ENSEEUG00000015084	SYF2	86	45.000	Erinaceus_europaeus
FBgn0033556	CG12343	97	55.000	ENSELUG00000003465	syf2	92	55.000	Esox_lucius
FBgn0033556	CG12343	99	57.399	ENSFCAG00000010324	-	76	57.399	Felis_catus
FBgn0033556	CG12343	97	57.727	ENSFCAG00000043095	-	89	57.727	Felis_catus
FBgn0033556	CG12343	91	57.282	ENSFALG00000000460	SYF2	89	55.204	Ficedula_albicollis
FBgn0033556	CG12343	97	56.818	ENSFDAG00000008310	SYF2	90	56.818	Fukomys_damarensis
FBgn0033556	CG12343	99	47.577	ENSFHEG00000007238	syf2	99	47.577	Fundulus_heteroclitus
FBgn0033556	CG12343	96	57.534	ENSGMOG00000019138	syf2	97	57.534	Gadus_morhua
FBgn0033556	CG12343	98	58.371	ENSGALG00000013639	SYF2	87	58.371	Gallus_gallus
FBgn0033556	CG12343	99	55.310	ENSGAFG00000019435	syf2	94	55.310	Gambusia_affinis
FBgn0033556	CG12343	98	53.333	ENSGACG00000007305	syf2	95	53.070	Gasterosteus_aculeatus
FBgn0033556	CG12343	98	58.850	ENSGAGG00000010670	SYF2	92	58.261	Gopherus_agassizii
FBgn0033556	CG12343	92	58.454	ENSGGOG00000012796	SYF2	90	56.818	Gorilla_gorilla
FBgn0033556	CG12343	94	56.481	ENSHBUG00000020477	syf2	92	56.481	Haplochromis_burtoni
FBgn0033556	CG12343	99	50.439	ENSHGLG00000004304	-	95	50.870	Heterocephalus_glaber_female
FBgn0033556	CG12343	99	55.652	ENSHGLG00000014393	SYF2	93	55.652	Heterocephalus_glaber_female
FBgn0033556	CG12343	99	55.652	ENSHGLG00100014722	SYF2	93	55.652	Heterocephalus_glaber_male
FBgn0033556	CG12343	97	53.636	ENSHCOG00000012904	syf2	71	53.636	Hippocampus_comes
FBgn0033556	CG12343	99	53.778	ENSIPUG00000019859	syf2	94	53.778	Ictalurus_punctatus
FBgn0033556	CG12343	65	51.020	ENSSTOG00000023984	SYF2	99	51.020	Ictidomys_tridecemlineatus
FBgn0033556	CG12343	94	56.338	ENSJJAG00000013301	Syf2	94	59.000	Jaculus_jaculus
FBgn0033556	CG12343	99	55.263	ENSKMAG00000013856	syf2	95	55.263	Kryptolebias_marmoratus
FBgn0033556	CG12343	97	54.795	ENSLBEG00000014425	syf2	94	54.425	Labrus_bergylta
FBgn0033556	CG12343	98	54.299	ENSLACG00000012064	SYF2	92	55.204	Latimeria_chalumnae
FBgn0033556	CG12343	98	55.656	ENSLOCG00000002728	syf2	87	55.656	Lepisosteus_oculatus
FBgn0033556	CG12343	97	56.818	ENSLAFG00000023150	-	89	56.818	Loxodonta_africana
FBgn0033556	CG12343	80	38.674	ENSLAFG00000030814	-	97	39.779	Loxodonta_africana
FBgn0033556	CG12343	97	54.091	ENSMFAG00000041831	SYF2	90	55.909	Macaca_fascicularis
FBgn0033556	CG12343	92	55.556	ENSMMUG00000002968	SYF2	90	55.909	Macaca_mulatta
FBgn0033556	CG12343	97	54.091	ENSMNEG00000030180	SYF2	90	55.909	Macaca_nemestrina
FBgn0033556	CG12343	99	53.043	ENSMLEG00000030248	SYF2	94	54.783	Mandrillus_leucophaeus
FBgn0033556	CG12343	94	55.556	ENSMAMG00000010403	syf2	91	54.299	Mastacembelus_armatus
FBgn0033556	CG12343	94	56.481	ENSMZEG00005006429	syf2	90	56.481	Maylandia_zebra
FBgn0033556	CG12343	88	60.000	ENSMGAG00000002019	SYF2	99	60.000	Meleagris_gallopavo
FBgn0033556	CG12343	97	57.273	ENSMAUG00000018974	Syf2	90	57.273	Mesocricetus_auratus
FBgn0033556	CG12343	88	59.500	ENSMICG00000016191	SYF2	99	59.500	Microcebus_murinus
FBgn0033556	CG12343	97	57.273	ENSMOCG00000022938	Syf2	90	57.273	Microtus_ochrogaster
FBgn0033556	CG12343	97	55.000	ENSMMOG00000002396	syf2	91	55.000	Mola_mola
FBgn0033556	CG12343	98	54.626	ENSMODG00000013951	-	99	54.626	Monodelphis_domestica
FBgn0033556	CG12343	97	53.182	ENSMALG00000010706	syf2	91	53.182	Monopterus_albus
FBgn0033556	CG12343	97	56.818	MGP_CAROLIEiJ_G0026633	Syf2	90	56.818	Mus_caroli
FBgn0033556	CG12343	97	56.818	ENSMUSG00000028821	Syf2	90	56.818	Mus_musculus
FBgn0033556	CG12343	97	56.818	MGP_PahariEiJ_G0028966	Syf2	90	56.818	Mus_pahari
FBgn0033556	CG12343	97	56.818	MGP_SPRETEiJ_G0027613	Syf2	90	56.818	Mus_spretus
FBgn0033556	CG12343	97	56.818	ENSMPUG00000015801	-	89	56.818	Mustela_putorius_furo
FBgn0033556	CG12343	96	56.422	ENSMPUG00000015802	-	89	56.818	Mustela_putorius_furo
FBgn0033556	CG12343	97	57.727	ENSMLUG00000001885	SYF2	89	57.727	Myotis_lucifugus
FBgn0033556	CG12343	97	56.818	ENSNGAG00000007912	Syf2	89	56.818	Nannospalax_galili
FBgn0033556	CG12343	99	50.427	ENSNBRG00000010720	syf2	94	50.427	Neolamprologus_brichardi
FBgn0033556	CG12343	92	58.454	ENSNLEG00000035185	SYF2	90	56.818	Nomascus_leucogenys
FBgn0033556	CG12343	99	56.087	ENSOPRG00000012870	SYF2	94	56.087	Ochotona_princeps
FBgn0033556	CG12343	99	53.043	ENSODEG00000014338	-	95	53.043	Octodon_degus
FBgn0033556	CG12343	97	56.818	ENSODEG00000017664	-	92	56.818	Octodon_degus
FBgn0033556	CG12343	98	54.299	ENSONIG00000008213	syf2	94	54.825	Oreochromis_niloticus
FBgn0033556	CG12343	90	59.113	ENSOANG00000009552	SYF2	99	59.113	Ornithorhynchus_anatinus
FBgn0033556	CG12343	96	57.339	ENSOCUG00000013050	SYF2	92	57.522	Oryctolagus_cuniculus
FBgn0033556	CG12343	94	56.019	ENSORLG00000028820	syf2	92	56.019	Oryzias_latipes
FBgn0033556	CG12343	94	56.019	ENSORLG00020018333	syf2	90	56.019	Oryzias_latipes_hni
FBgn0033556	CG12343	94	56.019	ENSORLG00015014665	syf2	90	56.019	Oryzias_latipes_hsok
FBgn0033556	CG12343	97	55.000	ENSOMEG00000013911	syf2	92	55.000	Oryzias_melastigma
FBgn0033556	CG12343	99	56.522	ENSOGAG00000009962	SYF2	93	56.522	Otolemur_garnettii
FBgn0033556	CG12343	86	43.590	ENSOARG00000006269	-	99	43.590	Ovis_aries
FBgn0033556	CG12343	97	56.306	ENSOARG00000006348	-	89	56.306	Ovis_aries
FBgn0033556	CG12343	92	58.454	ENSPPAG00000036579	SYF2	90	56.818	Pan_paniscus
FBgn0033556	CG12343	97	57.727	ENSPPRG00000001651	-	89	57.727	Panthera_pardus
FBgn0033556	CG12343	99	57.399	ENSPPRG00000001638	-	90	57.399	Panthera_pardus
FBgn0033556	CG12343	96	57.339	ENSPTIG00000005711	-	80	57.466	Panthera_tigris_altaica
FBgn0033556	CG12343	97	57.727	ENSPTIG00000007036	-	89	57.727	Panthera_tigris_altaica
FBgn0033556	CG12343	92	58.454	ENSPTRG00000000352	SYF2	90	56.818	Pan_troglodytes
FBgn0033556	CG12343	97	54.091	ENSPANG00000008139	SYF2	90	55.909	Papio_anubis
FBgn0033556	CG12343	97	54.545	ENSPKIG00000008130	syf2	93	54.545	Paramormyrops_kingsleyae
FBgn0033556	CG12343	97	58.636	ENSPSIG00000011816	SYF2	85	58.636	Pelodiscus_sinensis
FBgn0033556	CG12343	97	54.545	ENSPMGG00000008755	syf2	85	54.545	Periophthalmus_magnuspinnatus
FBgn0033556	CG12343	97	55.455	ENSPEMG00000008283	Syf2	90	56.818	Peromyscus_maniculatus_bairdii
FBgn0033556	CG12343	97	57.727	ENSPCIG00000014235	SYF2	87	57.727	Phascolarctos_cinereus
FBgn0033556	CG12343	99	55.752	ENSPFOG00000004116	syf2	93	55.752	Poecilia_formosa
FBgn0033556	CG12343	99	55.310	ENSPLAG00000006691	syf2	96	55.310	Poecilia_latipinna
FBgn0033556	CG12343	99	52.655	ENSPMEG00000011684	syf2	96	52.655	Poecilia_mexicana
FBgn0033556	CG12343	96	55.505	ENSPREG00000003009	syf2	94	55.310	Poecilia_reticulata
FBgn0033556	CG12343	97	56.818	ENSPPYG00000001713	SYF2	90	56.818	Pongo_abelii
FBgn0033556	CG12343	70	54.088	ENSPCOG00000027011	SYF2	74	54.088	Propithecus_coquereli
FBgn0033556	CG12343	99	51.304	ENSPVAG00000005841	SYF2	93	51.304	Pteropus_vampyrus
FBgn0033556	CG12343	94	56.481	ENSPNYG00000004979	syf2	90	56.481	Pundamilia_nyererei
FBgn0033556	CG12343	98	57.014	ENSPNAG00000015570	syf2	92	57.014	Pygocentrus_nattereri
FBgn0033556	CG12343	97	56.818	ENSRNOG00000060597	Syf2	90	56.818	Rattus_norvegicus
FBgn0033556	CG12343	97	53.636	ENSRBIG00000042970	SYF2	90	53.636	Rhinopithecus_bieti
FBgn0033556	CG12343	97	54.091	ENSRROG00000001347	SYF2	90	55.909	Rhinopithecus_roxellana
FBgn0033556	CG12343	96	56.881	ENSSBOG00000020184	SYF2	90	57.273	Saimiri_boliviensis_boliviensis
FBgn0033556	CG12343	98	56.637	ENSSHAG00000015630	-	92	56.087	Sarcophilus_harrisii
FBgn0033556	CG12343	90	57.843	ENSSHAG00000007152	-	98	57.843	Sarcophilus_harrisii
FBgn0033556	CG12343	97	55.455	ENSSFOG00015023647	syf2	92	55.455	Scleropages_formosus
FBgn0033556	CG12343	97	55.000	ENSSMAG00000009867	syf2	92	55.000	Scophthalmus_maximus
FBgn0033556	CG12343	97	55.909	ENSSDUG00000013072	syf2	94	55.752	Seriola_dumerili
FBgn0033556	CG12343	97	55.909	ENSSLDG00000012677	syf2	94	55.752	Seriola_lalandi_dorsalis
FBgn0033556	CG12343	70	59.119	ENSSARG00000012889	SYF2	64	59.119	Sorex_araneus
FBgn0033556	CG12343	99	56.957	ENSSPUG00000005251	SYF2	90	56.957	Sphenodon_punctatus
FBgn0033556	CG12343	99	55.752	ENSSPAG00000009626	syf2	94	55.752	Stegastes_partitus
FBgn0033556	CG12343	97	56.818	ENSSSCG00000037481	SYF2	89	56.818	Sus_scrofa
FBgn0033556	CG12343	99	55.263	ENSTRUG00000001499	syf2	90	55.263	Takifugu_rubripes
FBgn0033556	CG12343	97	53.182	ENSTNIG00000016912	syf2	98	53.182	Tetraodon_nigroviridis
FBgn0033556	CG12343	99	41.739	ENSTBEG00000017370	SYF2	92	41.739	Tupaia_belangeri
FBgn0033556	CG12343	96	56.422	ENSTTRG00000003550	SYF2	89	56.818	Tursiops_truncatus
FBgn0033556	CG12343	97	55.909	ENSUAMG00000002897	SYF2	89	55.909	Ursus_americanus
FBgn0033556	CG12343	92	57.971	ENSUMAG00000013108	SYF2	89	56.364	Ursus_maritimus
FBgn0033556	CG12343	100	55.310	ENSVPAG00000005705	SYF2	92	55.310	Vicugna_pacos
FBgn0033556	CG12343	92	57.488	ENSVVUG00000027181	-	90	55.556	Vulpes_vulpes
FBgn0033556	CG12343	96	56.422	ENSVVUG00000027175	-	89	56.818	Vulpes_vulpes
FBgn0033556	CG12343	97	57.727	ENSXETG00000022797	syf2	88	57.727	Xenopus_tropicalis
FBgn0033556	CG12343	95	55.140	ENSXMAG00000022698	syf2	92	54.751	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0000974	Prp19 complex	21873635.	IBA	Component
GO:0003723	RNA binding	-	ISS	Function
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISS	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component