EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0033688 (Gene tree)
Gene ID: 36304
Gene Symbol: Prp8
Alias: -
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 8741 bases
Position: chr2R:12154258-12162998
Accession: FBgn0033688
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087124	RRM_4	PF10598.9	5.9e-48	1	1
FBpp0087124	U5_2-snRNA_bdg	PF10597.9	2.3e-73	1	1
FBpp0087124	PRO8NT	PF08082.11	3.9e-87	1	1
FBpp0087124	U6-snRNA_bdg	PF10596.9	7.4e-90	1	1
FBpp0087124	PROCN	PF08083.11	7.9e-235	1	1
FBpp0087124	PRP8_domainIV	PF12134.8	4.2e-130	1	1
FBpp0087124	PROCT	PF08084.11	3.9e-51	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0088016	-	7442	-	FBpp0087124	2396 (aa)	-	A1Z8U0

Gene Model

Click here to download FBgn0033688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0033688's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0033688	Prp8	98	91.122	ENSG00000174231	PRPF8	99	91.549	Homo_sapiens
FBgn0033688	Prp8	97	92.009	ENSAPOG00000010079	prpf8	99	91.940	Acanthochromis_polyacanthus
FBgn0033688	Prp8	98	91.122	ENSAMEG00000007940	PRPF8	99	91.549	Ailuropoda_melanoleuca
FBgn0033688	Prp8	97	90.517	ENSACIG00000018280	prpf8	99	90.004	Amphilophus_citrinellus
FBgn0033688	Prp8	97	92.009	ENSAOCG00000010725	prpf8	99	91.940	Amphiprion_ocellaris
FBgn0033688	Prp8	97	92.009	ENSAPEG00000014397	prpf8	99	91.940	Amphiprion_percula
FBgn0033688	Prp8	97	91.404	ENSATEG00000010062	prpf8	99	90.925	Anabas_testudineus
FBgn0033688	Prp8	94	92.044	ENSAPLG00000010357	PRPF8	100	92.044	Anas_platyrhynchos
FBgn0033688	Prp8	80	90.994	ENSACAG00000014784	PRPF8	99	90.226	Anolis_carolinensis
FBgn0033688	Prp8	98	91.122	ENSANAG00000032629	PRPF8	99	91.549	Aotus_nancymaae
FBgn0033688	Prp8	97	91.922	ENSACLG00000020858	prpf8	99	92.014	Astatotilapia_calliptera
FBgn0033688	Prp8	97	91.879	ENSAMXG00000020291	prpf8	99	91.810	Astyanax_mexicanus
FBgn0033688	Prp8	98	91.122	ENSBTAG00000011488	PRPF8	99	91.549	Bos_taurus
FBgn0033688	Prp8	97	85.727	WBGene00004187	prp-8	99	85.819	Caenorhabditis_elegans
FBgn0033688	Prp8	98	91.122	ENSCJAG00000001911	PRPF8	99	91.549	Callithrix_jacchus
FBgn0033688	Prp8	98	91.122	ENSCAFG00000019221	PRPF8	99	91.549	Canis_familiaris
FBgn0033688	Prp8	94	92.153	ENSCAFG00020009943	PRPF8	100	92.153	Canis_lupus_dingo
FBgn0033688	Prp8	98	91.122	ENSCHIG00000017499	PRPF8	99	91.549	Capra_hircus
FBgn0033688	Prp8	98	91.122	ENSTSYG00000014120	PRPF8	99	91.549	Carlito_syrichta
FBgn0033688	Prp8	94	90.031	ENSCAPG00000009459	PRPF8	99	90.031	Cavia_aperea
FBgn0033688	Prp8	98	91.122	ENSCPOG00000010379	PRPF8	99	91.549	Cavia_porcellus
FBgn0033688	Prp8	98	91.122	ENSCCAG00000031983	-	99	91.549	Cebus_capucinus
FBgn0033688	Prp8	98	91.122	ENSCATG00000038595	PRPF8	99	91.549	Cercocebus_atys
FBgn0033688	Prp8	98	91.122	ENSCLAG00000004388	PRPF8	99	91.549	Chinchilla_lanigera
FBgn0033688	Prp8	98	91.122	ENSCSAG00000013929	PRPF8	99	91.549	Chlorocebus_sabaeus
FBgn0033688	Prp8	79	92.667	ENSCHOG00000008590	PRPF8	88	92.667	Choloepus_hoffmanni
FBgn0033688	Prp8	97	91.538	ENSCPBG00000020409	PRPF8	99	91.538	Chrysemys_picta_bellii
FBgn0033688	Prp8	96	89.716	ENSCSAVG00000007825	-	100	88.660	Ciona_savignyi
FBgn0033688	Prp8	98	91.122	ENSCANG00000043088	PRPF8	99	91.549	Colobus_angolensis_palliatus
FBgn0033688	Prp8	72	96.457	ENSCGRG00000005129	Prpf8	100	96.457	Cricetulus_griseus_crigri
FBgn0033688	Prp8	97	91.836	ENSCSEG00000007905	prpf8	99	91.617	Cynoglossus_semilaevis
FBgn0033688	Prp8	97	92.009	ENSDARG00000026180	prpf8	99	91.438	Danio_rerio
FBgn0033688	Prp8	91	91.651	ENSDNOG00000018471	PRPF8	99	91.690	Dasypus_novemcinctus
FBgn0033688	Prp8	79	89.054	ENSDORG00000006185	Prpf8	95	89.744	Dipodomys_ordii
FBgn0033688	Prp8	96	90.297	ENSETEG00000017592	PRPF8	97	90.297	Echinops_telfairi
FBgn0033688	Prp8	96	89.757	ENSEBUG00000006548	prpf8	99	89.315	Eptatretus_burgeri
FBgn0033688	Prp8	98	91.122	ENSEASG00005009514	PRPF8	99	91.549	Equus_asinus_asinus
FBgn0033688	Prp8	95	92.139	ENSECAG00000021318	PRPF8	100	92.139	Equus_caballus
FBgn0033688	Prp8	65	95.200	ENSEEUG00000012120	-	67	95.556	Erinaceus_europaeus
FBgn0033688	Prp8	94	91.170	ENSELUG00000007120	prpf8	99	90.686	Esox_lucius
FBgn0033688	Prp8	98	91.122	ENSFCAG00000006297	PRPF8	99	91.549	Felis_catus
FBgn0033688	Prp8	97	91.545	ENSFALG00000006628	PRPF8	99	91.545	Ficedula_albicollis
FBgn0033688	Prp8	98	91.122	ENSFDAG00000004711	PRPF8	99	91.549	Fukomys_damarensis
FBgn0033688	Prp8	97	91.793	ENSFHEG00000021084	prpf8	99	91.193	Fundulus_heteroclitus
FBgn0033688	Prp8	97	89.795	ENSGMOG00000002028	prpf8	99	89.331	Gadus_morhua
FBgn0033688	Prp8	97	91.624	ENSGALG00000002943	PRPF8	99	91.624	Gallus_gallus
FBgn0033688	Prp8	97	91.677	ENSGAFG00000010337	prpf8	99	91.115	Gambusia_affinis
FBgn0033688	Prp8	97	91.883	ENSGACG00000008504	prpf8	99	91.427	Gasterosteus_aculeatus
FBgn0033688	Prp8	97	91.581	ENSGAGG00000008350	PRPF8	99	91.581	Gopherus_agassizii
FBgn0033688	Prp8	98	91.122	ENSGGOG00000005516	PRPF8	99	91.549	Gorilla_gorilla
FBgn0033688	Prp8	96	92.042	ENSHBUG00000016192	prpf8	99	91.810	Haplochromis_burtoni
FBgn0033688	Prp8	98	91.122	ENSHGLG00000012029	PRPF8	99	91.549	Heterocephalus_glaber_female
FBgn0033688	Prp8	98	91.122	ENSHGLG00100016494	PRPF8	99	91.549	Heterocephalus_glaber_male
FBgn0033688	Prp8	97	91.731	ENSHCOG00000016414	prpf8	99	91.470	Hippocampus_comes
FBgn0033688	Prp8	97	91.922	ENSIPUG00000023230	prpf8	99	91.481	Ictalurus_punctatus
FBgn0033688	Prp8	98	91.122	ENSSTOG00000005128	PRPF8	99	91.549	Ictidomys_tridecemlineatus
FBgn0033688	Prp8	98	89.159	ENSJJAG00000021159	Prpf8	99	89.575	Jaculus_jaculus
FBgn0033688	Prp8	97	92.009	ENSKMAG00000016118	prpf8	99	91.414	Kryptolebias_marmoratus
FBgn0033688	Prp8	97	91.836	ENSLBEG00000026903	prpf8	99	91.353	Labrus_bergylta
FBgn0033688	Prp8	92	89.738	ENSLACG00000010479	PRPF8	99	92.516	Latimeria_chalumnae
FBgn0033688	Prp8	97	91.362	ENSLOCG00000005409	prpf8	99	91.577	Lepisosteus_oculatus
FBgn0033688	Prp8	98	91.122	ENSLAFG00000015445	PRPF8	99	91.549	Loxodonta_africana
FBgn0033688	Prp8	98	91.122	ENSMFAG00000039995	PRPF8	99	91.549	Macaca_fascicularis
FBgn0033688	Prp8	98	91.122	ENSMMUG00000004820	PRPF8	99	91.549	Macaca_mulatta
FBgn0033688	Prp8	98	91.122	ENSMNEG00000035713	PRPF8	99	91.549	Macaca_nemestrina
FBgn0033688	Prp8	98	91.122	ENSMLEG00000037937	PRPF8	99	91.549	Mandrillus_leucophaeus
FBgn0033688	Prp8	97	92.052	ENSMAMG00000008919	prpf8	99	91.567	Mastacembelus_armatus
FBgn0033688	Prp8	97	91.922	ENSMZEG00005015073	prpf8	99	91.396	Maylandia_zebra
FBgn0033688	Prp8	97	91.624	ENSMGAG00000004769	PRPF8	99	91.624	Meleagris_gallopavo
FBgn0033688	Prp8	98	91.122	ENSMICG00000010320	PRPF8	99	91.549	Microcebus_murinus
FBgn0033688	Prp8	98	91.122	ENSMOCG00000016838	Prpf8	99	91.549	Microtus_ochrogaster
FBgn0033688	Prp8	97	91.573	ENSMMOG00000011887	prpf8	99	91.092	Mola_mola
FBgn0033688	Prp8	97	91.299	ENSMODG00000010480	PRPF8	99	91.299	Monodelphis_domestica
FBgn0033688	Prp8	92	92.687	ENSMALG00000003558	prpf8	99	92.687	Monopterus_albus
FBgn0033688	Prp8	98	91.080	MGP_CAROLIEiJ_G0016740	Prpf8	99	91.506	Mus_caroli
FBgn0033688	Prp8	98	91.080	ENSMUSG00000020850	Prpf8	99	91.506	Mus_musculus
FBgn0033688	Prp8	98	90.994	MGP_PahariEiJ_G0017877	Prpf8	99	91.420	Mus_pahari
FBgn0033688	Prp8	98	91.080	MGP_SPRETEiJ_G0017583	Prpf8	99	91.506	Mus_spretus
FBgn0033688	Prp8	98	91.122	ENSMPUG00000013227	PRPF8	99	91.549	Mustela_putorius_furo
FBgn0033688	Prp8	98	91.091	ENSMLUG00000002666	PRPF8	99	91.517	Myotis_lucifugus
FBgn0033688	Prp8	98	89.373	ENSNGAG00000005305	Prpf8	99	89.790	Nannospalax_galili
FBgn0033688	Prp8	97	91.965	ENSNBRG00000013127	prpf8	99	91.438	Neolamprologus_brichardi
FBgn0033688	Prp8	94	92.817	ENSNLEG00000000897	PRPF8	97	92.691	Nomascus_leucogenys
FBgn0033688	Prp8	96	90.226	ENSMEUG00000015999	PRPF8	99	90.226	Notamacropus_eugenii
FBgn0033688	Prp8	98	89.714	ENSOPRG00000003102	PRPF8	99	90.133	Ochotona_princeps
FBgn0033688	Prp8	98	91.122	ENSODEG00000008468	PRPF8	99	91.549	Octodon_degus
FBgn0033688	Prp8	97	91.922	ENSONIG00000008153	prpf8	99	91.396	Oreochromis_niloticus
FBgn0033688	Prp8	79	94.481	ENSOANG00000004250	PRPF8	97	94.481	Ornithorhynchus_anatinus
FBgn0033688	Prp8	98	91.122	ENSOCUG00000000081	PRPF8	99	91.549	Oryctolagus_cuniculus
FBgn0033688	Prp8	97	91.749	ENSORLG00000008036	prpf8	99	91.345	Oryzias_latipes
FBgn0033688	Prp8	97	91.710	ENSORLG00020021070	prpf8	99	91.306	Oryzias_latipes_hni
FBgn0033688	Prp8	97	91.749	ENSORLG00015002340	prpf8	99	91.302	Oryzias_latipes_hsok
FBgn0033688	Prp8	97	89.845	ENSOMEG00000016866	prpf8	99	89.812	Oryzias_melastigma
FBgn0033688	Prp8	98	91.006	ENSOARG00000013312	PRPF8	99	91.431	Ovis_aries
FBgn0033688	Prp8	98	91.122	ENSPPAG00000042753	PRPF8	99	91.549	Pan_paniscus
FBgn0033688	Prp8	98	91.122	ENSPPRG00000008746	PRPF8	99	91.549	Panthera_pardus
FBgn0033688	Prp8	98	91.037	ENSPTIG00000019200	PRPF8	99	91.463	Panthera_tigris_altaica
FBgn0033688	Prp8	98	91.122	ENSPTRG00000039576	PRPF8	99	91.549	Pan_troglodytes
FBgn0033688	Prp8	96	92.014	ENSPANG00000024607	PRPF8	98	92.014	Papio_anubis
FBgn0033688	Prp8	97	91.724	ENSPKIG00000011201	prpf8	99	91.243	Paramormyrops_kingsleyae
FBgn0033688	Prp8	97	91.495	ENSPSIG00000013393	PRPF8	99	91.495	Pelodiscus_sinensis
FBgn0033688	Prp8	98	91.122	ENSPEMG00000021699	Prpf8	99	91.549	Peromyscus_maniculatus_bairdii
FBgn0033688	Prp8	94	90.209	ENSPMAG00000005438	prpf8	100	90.254	Petromyzon_marinus
FBgn0033688	Prp8	97	91.299	ENSPCIG00000022603	PRPF8	100	92.020	Phascolarctos_cinereus
FBgn0033688	Prp8	97	91.793	ENSPFOG00000007005	prpf8	99	91.228	Poecilia_formosa
FBgn0033688	Prp8	97	90.540	ENSPLAG00000020777	prpf8	99	90.141	Poecilia_latipinna
FBgn0033688	Prp8	97	91.793	ENSPMEG00000004051	prpf8	99	91.228	Poecilia_mexicana
FBgn0033688	Prp8	97	91.793	ENSPREG00000021902	prpf8	99	91.384	Poecilia_reticulata
FBgn0033688	Prp8	98	91.122	ENSPPYG00000007777	PRPF8	99	91.549	Pongo_abelii
FBgn0033688	Prp8	88	89.492	ENSPCAG00000008938	PRPF8	90	89.138	Procavia_capensis
FBgn0033688	Prp8	98	91.122	ENSPCOG00000015182	PRPF8	99	91.549	Propithecus_coquereli
FBgn0033688	Prp8	91	93.955	ENSPVAG00000002134	PRPF8	93	93.955	Pteropus_vampyrus
FBgn0033688	Prp8	96	92.042	ENSPNYG00000016356	prpf8	99	91.810	Pundamilia_nyererei
FBgn0033688	Prp8	97	91.403	ENSPNAG00000009247	prpf8	99	91.403	Pygocentrus_nattereri
FBgn0033688	Prp8	98	91.080	ENSRNOG00000003495	Prpf8	99	91.506	Rattus_norvegicus
FBgn0033688	Prp8	98	91.122	ENSRBIG00000031219	PRPF8	100	91.797	Rhinopithecus_bieti
FBgn0033688	Prp8	98	91.122	ENSRROG00000038014	PRPF8	100	91.797	Rhinopithecus_roxellana
FBgn0033688	Prp8	96	62.397	YHR165C	PRP8	95	62.441	Saccharomyces_cerevisiae
FBgn0033688	Prp8	98	91.122	ENSSBOG00000029717	PRPF8	99	91.549	Saimiri_boliviensis_boliviensis
FBgn0033688	Prp8	97	91.256	ENSSHAG00000006167	PRPF8	99	91.256	Sarcophilus_harrisii
FBgn0033688	Prp8	98	90.844	ENSSFOG00015013905	prpf8	99	91.481	Scleropages_formosus
FBgn0033688	Prp8	97	91.879	ENSSMAG00000017736	prpf8	99	91.353	Scophthalmus_maximus
FBgn0033688	Prp8	97	92.009	ENSSDUG00000003029	prpf8	99	91.524	Seriola_dumerili
FBgn0033688	Prp8	67	93.746	ENSSLDG00000017096	prpf8	100	93.746	Seriola_lalandi_dorsalis
FBgn0033688	Prp8	86	89.623	ENSSARG00000002892	PRPF8	87	89.623	Sorex_araneus
FBgn0033688	Prp8	97	91.334	ENSSPUG00000007463	PRPF8	99	91.334	Sphenodon_punctatus
FBgn0033688	Prp8	97	91.404	ENSSPAG00000015639	prpf8	99	91.336	Stegastes_partitus
FBgn0033688	Prp8	98	91.122	ENSSSCG00000017817	PRPF8	99	91.549	Sus_scrofa
FBgn0033688	Prp8	97	91.545	ENSTGUG00000005648	-	99	91.545	Taeniopygia_guttata
FBgn0033688	Prp8	50	93.892	ENSTGUG00000015597	-	95	93.892	Taeniopygia_guttata
FBgn0033688	Prp8	97	91.706	ENSTRUG00000015906	prpf8	99	91.413	Takifugu_rubripes
FBgn0033688	Prp8	91	93.731	ENSTNIG00000003460	prpf8	99	93.731	Tetraodon_nigroviridis
FBgn0033688	Prp8	86	94.414	ENSTBEG00000006431	PRPF8	89	94.414	Tupaia_belangeri
FBgn0033688	Prp8	98	90.610	ENSTTRG00000006869	PRPF8	99	91.034	Tursiops_truncatus
FBgn0033688	Prp8	53	88.389	ENSUAMG00000015644	-	96	88.669	Ursus_americanus
FBgn0033688	Prp8	98	90.866	ENSUMAG00000009385	PRPF8	99	91.291	Ursus_maritimus
FBgn0033688	Prp8	69	94.483	ENSVPAG00000006063	-	71	94.483	Vicugna_pacos
FBgn0033688	Prp8	98	90.640	ENSVVUG00000021695	PRPF8	99	91.549	Vulpes_vulpes
FBgn0033688	Prp8	97	91.843	ENSXETG00000022259	prpf8	99	91.345	Xenopus_tropicalis
FBgn0033688	Prp8	97	91.793	ENSXCOG00000012775	prpf8	99	91.150	Xiphophorus_couchianus
FBgn0033688	Prp8	97	91.749	ENSXMAG00000008505	prpf8	99	91.107	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000386	second spliceosomal transesterification activity	21873635.	IBA	Function
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	18765666.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005682	U5 snRNP	10908584.	ISS	Component
GO:0005737	cytoplasm	24722212.	IDA	Component
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0007419	ventral cord development	26092715.	HMP	Process
GO:0017069	snRNA binding	-	ISS	Function
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0030532	small nuclear ribonucleoprotein complex	24722212.	IPI	Component
GO:0030619	U1 snRNA binding	21873635.	IBA	Function
GO:0030620	U2 snRNA binding	21873635.	IBA	Function
GO:0030623	U5 snRNA binding	21873635.	IBA	Function
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function