EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0033842 (Gene tree)
Gene ID: 36494
Gene Symbol: cbc
Alias: -
Full Name: crowded by cid
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1880 bases
Position: chr2R:13483512-13485391
Accession: FBgn0033842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0086820	Clp1	PF06807.14	6.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0087701	-	1654	-	FBpp0086820	423 (aa)	-	Q7K284

Gene Model

Click here to download FBgn0033842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0033842's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0033842	cbc	97	56.553	ENSG00000172409	CLP1	96	56.553	Homo_sapiens
FBgn0033842	cbc	97	54.785	ENSAPOG00000008242	clp1	95	54.785	Acanthochromis_polyacanthus
FBgn0033842	cbc	97	56.796	ENSAMEG00000014551	CLP1	94	56.796	Ailuropoda_melanoleuca
FBgn0033842	cbc	97	54.067	ENSACIG00000006310	clp1	94	54.067	Amphilophus_citrinellus
FBgn0033842	cbc	97	54.785	ENSAOCG00000010681	clp1	97	54.785	Amphiprion_ocellaris
FBgn0033842	cbc	97	54.785	ENSAPEG00000012165	clp1	97	54.785	Amphiprion_percula
FBgn0033842	cbc	97	55.263	ENSATEG00000012374	clp1	95	55.263	Anabas_testudineus
FBgn0033842	cbc	99	55.164	ENSACAG00000007139	CLP1	99	55.164	Anolis_carolinensis
FBgn0033842	cbc	97	56.553	ENSANAG00000034935	CLP1	96	56.553	Aotus_nancymaae
FBgn0033842	cbc	97	54.306	ENSACLG00000013573	clp1	95	54.306	Astatotilapia_calliptera
FBgn0033842	cbc	97	54.265	ENSAMXG00000014194	clp1	97	54.265	Astyanax_mexicanus
FBgn0033842	cbc	97	56.796	ENSBTAG00000006493	CLP1	96	56.796	Bos_taurus
FBgn0033842	cbc	99	42.056	WBGene00010304	clpf-1	99	42.056	Caenorhabditis_elegans
FBgn0033842	cbc	97	56.553	ENSCJAG00000008748	CLP1	96	56.553	Callithrix_jacchus
FBgn0033842	cbc	97	56.796	ENSCAFG00000007815	CLP1	96	56.796	Canis_familiaris
FBgn0033842	cbc	97	56.796	ENSCAFG00020000903	CLP1	96	56.796	Canis_lupus_dingo
FBgn0033842	cbc	97	56.796	ENSCHIG00000023497	CLP1	96	56.796	Capra_hircus
FBgn0033842	cbc	99	55.634	ENSTSYG00000006824	CLP1	98	55.634	Carlito_syrichta
FBgn0033842	cbc	99	55.765	ENSCAPG00000009703	CLP1	99	55.765	Cavia_aperea
FBgn0033842	cbc	97	56.553	ENSCPOG00000012554	CLP1	98	56.553	Cavia_porcellus
FBgn0033842	cbc	97	56.311	ENSCCAG00000031957	CLP1	96	56.311	Cebus_capucinus
FBgn0033842	cbc	97	56.553	ENSCATG00000044628	CLP1	96	56.553	Cercocebus_atys
FBgn0033842	cbc	97	56.553	ENSCLAG00000004094	CLP1	96	56.553	Chinchilla_lanigera
FBgn0033842	cbc	97	56.553	ENSCSAG00000005994	CLP1	96	56.553	Chlorocebus_sabaeus
FBgn0033842	cbc	99	55.399	ENSCPBG00000016843	CLP1	99	55.399	Chrysemys_picta_bellii
FBgn0033842	cbc	98	52.415	ENSCING00000003779	-	96	52.415	Ciona_intestinalis
FBgn0033842	cbc	99	52.693	ENSCSAVG00000003437	-	99	52.693	Ciona_savignyi
FBgn0033842	cbc	97	56.553	ENSCANG00000034335	CLP1	96	56.553	Colobus_angolensis_palliatus
FBgn0033842	cbc	99	55.634	ENSCGRG00001002227	CLP1	99	55.634	Cricetulus_griseus_chok1gshd
FBgn0033842	cbc	99	55.634	ENSCGRG00000004328	CLP1	99	55.634	Cricetulus_griseus_crigri
FBgn0033842	cbc	97	54.545	ENSCSEG00000008614	clp1	95	54.545	Cynoglossus_semilaevis
FBgn0033842	cbc	97	53.349	ENSCVAG00000020101	clp1	95	53.349	Cyprinodon_variegatus
FBgn0033842	cbc	97	52.857	ENSDARG00000063663	clp1	94	52.719	Danio_rerio
FBgn0033842	cbc	97	56.796	ENSDNOG00000042415	CLP1	86	56.796	Dasypus_novemcinctus
FBgn0033842	cbc	99	55.634	ENSDORG00000014685	Clp1	99	55.634	Dipodomys_ordii
FBgn0033842	cbc	97	56.553	ENSETEG00000003009	CLP1	96	56.553	Echinops_telfairi
FBgn0033842	cbc	98	52.771	ENSEBUG00000011648	clp1	97	52.771	Eptatretus_burgeri
FBgn0033842	cbc	97	56.553	ENSEASG00005002093	CLP1	96	56.553	Equus_asinus_asinus
FBgn0033842	cbc	97	56.553	ENSECAG00000011597	CLP1	96	56.553	Equus_caballus
FBgn0033842	cbc	99	55.634	ENSEEUG00000012771	CLP1	99	55.634	Erinaceus_europaeus
FBgn0033842	cbc	97	53.699	ENSELUG00000024048	clp1	95	53.555	Esox_lucius
FBgn0033842	cbc	97	56.796	ENSFCAG00000006633	CLP1	96	56.796	Felis_catus
FBgn0033842	cbc	99	54.930	ENSFALG00000011145	CLP1	99	54.930	Ficedula_albicollis
FBgn0033842	cbc	97	56.553	ENSFDAG00000000234	CLP1	96	56.553	Fukomys_damarensis
FBgn0033842	cbc	97	53.589	ENSFHEG00000014760	CLP1	95	53.589	Fundulus_heteroclitus
FBgn0033842	cbc	98	53.938	ENSGMOG00000019340	clp1	95	53.938	Gadus_morhua
FBgn0033842	cbc	99	55.634	ENSGALG00000007370	CLP1	99	55.634	Gallus_gallus
FBgn0033842	cbc	97	53.349	ENSGAFG00000003020	clp1	96	53.349	Gambusia_affinis
FBgn0033842	cbc	97	54.545	ENSGACG00000017832	clp1	95	54.545	Gasterosteus_aculeatus
FBgn0033842	cbc	99	55.634	ENSGAGG00000013279	CLP1	99	55.634	Gopherus_agassizii
FBgn0033842	cbc	97	56.553	ENSGGOG00000023006	CLP1	96	56.553	Gorilla_gorilla
FBgn0033842	cbc	97	54.306	ENSHBUG00000010436	clp1	95	54.306	Haplochromis_burtoni
FBgn0033842	cbc	97	56.553	ENSHGLG00000009914	CLP1	96	56.553	Heterocephalus_glaber_female
FBgn0033842	cbc	97	56.553	ENSHGLG00100006105	CLP1	96	56.553	Heterocephalus_glaber_male
FBgn0033842	cbc	98	54.502	ENSHCOG00000010072	clp1	95	54.502	Hippocampus_comes
FBgn0033842	cbc	97	53.318	ENSIPUG00000016238	clp1	94	53.176	Ictalurus_punctatus
FBgn0033842	cbc	97	56.796	ENSSTOG00000029257	CLP1	96	56.796	Ictidomys_tridecemlineatus
FBgn0033842	cbc	97	56.796	ENSJJAG00000023691	Clp1	96	56.796	Jaculus_jaculus
FBgn0033842	cbc	97	53.828	ENSKMAG00000011990	clp1	95	53.828	Kryptolebias_marmoratus
FBgn0033842	cbc	97	54.306	ENSLBEG00000010201	clp1	95	54.306	Labrus_bergylta
FBgn0033842	cbc	99	57.041	ENSLACG00000003160	CLP1	98	57.041	Latimeria_chalumnae
FBgn0033842	cbc	73	53.292	ENSLOCG00000008074	clp1	99	53.292	Lepisosteus_oculatus
FBgn0033842	cbc	97	56.553	ENSLAFG00000014907	CLP1	96	56.553	Loxodonta_africana
FBgn0033842	cbc	97	56.553	ENSMFAG00000046074	CLP1	96	56.553	Macaca_fascicularis
FBgn0033842	cbc	97	56.553	ENSMMUG00000038007	CLP1	95	56.553	Macaca_mulatta
FBgn0033842	cbc	97	56.553	ENSMNEG00000000259	CLP1	96	56.553	Macaca_nemestrina
FBgn0033842	cbc	97	56.553	ENSMLEG00000043556	CLP1	96	56.553	Mandrillus_leucophaeus
FBgn0033842	cbc	97	54.545	ENSMAMG00000002149	clp1	95	54.545	Mastacembelus_armatus
FBgn0033842	cbc	97	54.306	ENSMZEG00005002850	clp1	95	54.306	Maylandia_zebra
FBgn0033842	cbc	99	55.634	ENSMGAG00000009643	CLP1	99	55.634	Meleagris_gallopavo
FBgn0033842	cbc	99	55.869	ENSMAUG00000016261	Clp1	99	55.869	Mesocricetus_auratus
FBgn0033842	cbc	97	56.796	ENSMICG00000004895	CLP1	96	56.796	Microcebus_murinus
FBgn0033842	cbc	99	55.869	ENSMOCG00000005498	Clp1	99	55.869	Microtus_ochrogaster
FBgn0033842	cbc	97	54.306	ENSMMOG00000003229	clp1	95	54.306	Mola_mola
FBgn0033842	cbc	99	56.161	ENSMODG00000020107	-	99	56.161	Monodelphis_domestica
FBgn0033842	cbc	99	56.161	ENSMODG00000024148	-	99	56.161	Monodelphis_domestica
FBgn0033842	cbc	97	54.632	ENSMALG00000014239	clp1	95	54.632	Monopterus_albus
FBgn0033842	cbc	99	55.634	MGP_CAROLIEiJ_G0023726	Clp1	99	55.634	Mus_caroli
FBgn0033842	cbc	99	55.634	ENSMUSG00000027079	Clp1	99	55.634	Mus_musculus
FBgn0033842	cbc	99	55.634	MGP_PahariEiJ_G0025177	Clp1	99	55.634	Mus_pahari
FBgn0033842	cbc	99	55.634	MGP_SPRETEiJ_G0024646	Clp1	99	55.634	Mus_spretus
FBgn0033842	cbc	97	56.796	ENSMPUG00000000268	CLP1	96	56.796	Mustela_putorius_furo
FBgn0033842	cbc	97	56.553	ENSMLUG00000007904	CLP1	96	56.553	Myotis_lucifugus
FBgn0033842	cbc	97	56.553	ENSNGAG00000006165	Clp1	96	56.553	Nannospalax_galili
FBgn0033842	cbc	97	54.306	ENSNBRG00000005225	clp1	95	54.306	Neolamprologus_brichardi
FBgn0033842	cbc	73	56.332	ENSNLEG00000012809	-	95	56.332	Nomascus_leucogenys
FBgn0033842	cbc	99	56.398	ENSMEUG00000010949	CLP1	98	56.398	Notamacropus_eugenii
FBgn0033842	cbc	70	58.389	ENSOPRG00000007329	CLP1	99	58.389	Ochotona_princeps
FBgn0033842	cbc	97	56.553	ENSODEG00000011410	CLP1	96	56.553	Octodon_degus
FBgn0033842	cbc	97	54.306	ENSONIG00000005089	clp1	95	54.306	Oreochromis_niloticus
FBgn0033842	cbc	97	56.796	ENSOCUG00000007045	CLP1	96	56.796	Oryctolagus_cuniculus
FBgn0033842	cbc	98	53.647	ENSORLG00000003647	clp1	96	53.647	Oryzias_latipes
FBgn0033842	cbc	98	53.412	ENSORLG00020016676	clp1	96	53.412	Oryzias_latipes_hni
FBgn0033842	cbc	98	53.647	ENSORLG00015019484	clp1	96	53.647	Oryzias_latipes_hsok
FBgn0033842	cbc	97	54.157	ENSOMEG00000021303	clp1	95	54.157	Oryzias_melastigma
FBgn0033842	cbc	97	56.796	ENSOGAG00000004508	CLP1	96	56.796	Otolemur_garnettii
FBgn0033842	cbc	97	55.583	ENSOARG00000010145	CLP1	95	55.583	Ovis_aries
FBgn0033842	cbc	97	56.553	ENSPPAG00000041519	CLP1	96	56.553	Pan_paniscus
FBgn0033842	cbc	97	56.796	ENSPPRG00000006135	CLP1	96	56.796	Panthera_pardus
FBgn0033842	cbc	97	56.796	ENSPTIG00000015866	CLP1	96	56.796	Panthera_tigris_altaica
FBgn0033842	cbc	97	56.553	ENSPTRG00000047318	CLP1	96	56.553	Pan_troglodytes
FBgn0033842	cbc	97	56.553	ENSPANG00000017078	CLP1	94	56.553	Papio_anubis
FBgn0033842	cbc	97	54.854	ENSPKIG00000007697	clp1	94	54.699	Paramormyrops_kingsleyae
FBgn0033842	cbc	94	53.218	ENSPSIG00000005468	CLP1	100	53.218	Pelodiscus_sinensis
FBgn0033842	cbc	98	55.582	ENSPMGG00000012171	clp1	95	55.582	Periophthalmus_magnuspinnatus
FBgn0033842	cbc	99	55.869	ENSPEMG00000011213	-	99	55.869	Peromyscus_maniculatus_bairdii
FBgn0033842	cbc	99	52.941	ENSPMAG00000006707	clp1	99	52.941	Petromyzon_marinus
FBgn0033842	cbc	99	56.161	ENSPCIG00000011899	CLP1	98	56.161	Phascolarctos_cinereus
FBgn0033842	cbc	98	53.810	ENSPFOG00000008169	clp1	95	53.810	Poecilia_formosa
FBgn0033842	cbc	98	53.810	ENSPLAG00000022388	clp1	96	53.810	Poecilia_latipinna
FBgn0033842	cbc	98	53.810	ENSPMEG00000021088	clp1	96	53.810	Poecilia_mexicana
FBgn0033842	cbc	97	53.828	ENSPREG00000017802	clp1	95	53.828	Poecilia_reticulata
FBgn0033842	cbc	53	56.502	ENSPPYG00000003266	-	99	56.502	Pongo_abelii
FBgn0033842	cbc	97	56.796	ENSPCOG00000000360	CLP1	95	56.796	Propithecus_coquereli
FBgn0033842	cbc	97	56.796	ENSPVAG00000016270	CLP1	96	56.796	Pteropus_vampyrus
FBgn0033842	cbc	97	54.306	ENSPNYG00000017274	clp1	94	54.306	Pundamilia_nyererei
FBgn0033842	cbc	97	53.791	ENSPNAG00000026460	clp1	94	53.647	Pygocentrus_nattereri
FBgn0033842	cbc	99	55.634	ENSRNOG00000007416	Clp1	99	55.634	Rattus_norvegicus
FBgn0033842	cbc	97	56.553	ENSRBIG00000018191	CLP1	96	56.553	Rhinopithecus_bieti
FBgn0033842	cbc	97	56.553	ENSRROG00000039265	CLP1	96	56.553	Rhinopithecus_roxellana
FBgn0033842	cbc	96	45.946	ENSSBOG00000010558	-	93	45.946	Saimiri_boliviensis_boliviensis
FBgn0033842	cbc	97	56.553	ENSSBOG00000032517	-	96	56.553	Saimiri_boliviensis_boliviensis
FBgn0033842	cbc	99	56.398	ENSSHAG00000015695	CLP1	99	56.398	Sarcophilus_harrisii
FBgn0033842	cbc	97	52.594	ENSSFOG00015000628	clp1	96	52.459	Scleropages_formosus
FBgn0033842	cbc	98	54.157	ENSSMAG00000019423	clp1	94	54.157	Scophthalmus_maximus
FBgn0033842	cbc	97	54.785	ENSSDUG00000014495	clp1	95	54.785	Seriola_dumerili
FBgn0033842	cbc	97	54.785	ENSSLDG00000000937	clp1	95	54.785	Seriola_lalandi_dorsalis
FBgn0033842	cbc	53	56.502	ENSSARG00000002459	CLP1	99	56.502	Sorex_araneus
FBgn0033842	cbc	99	55.869	ENSSPUG00000016811	CLP1	99	55.869	Sphenodon_punctatus
FBgn0033842	cbc	97	54.545	ENSSPAG00000016052	clp1	95	54.545	Stegastes_partitus
FBgn0033842	cbc	97	56.796	ENSSSCG00000031442	CLP1	96	56.796	Sus_scrofa
FBgn0033842	cbc	99	54.930	ENSTGUG00000007002	CLP1	99	54.930	Taeniopygia_guttata
FBgn0033842	cbc	97	55.314	ENSTRUG00000012602	clp1	94	55.314	Takifugu_rubripes
FBgn0033842	cbc	97	54.348	ENSTNIG00000013125	clp1	94	54.348	Tetraodon_nigroviridis
FBgn0033842	cbc	97	56.796	ENSTBEG00000009975	CLP1	96	56.796	Tupaia_belangeri
FBgn0033842	cbc	97	56.553	ENSTTRG00000002096	CLP1	96	56.553	Tursiops_truncatus
FBgn0033842	cbc	97	56.796	ENSUAMG00000011388	CLP1	96	56.796	Ursus_americanus
FBgn0033842	cbc	97	56.796	ENSUMAG00000018317	CLP1	96	56.796	Ursus_maritimus
FBgn0033842	cbc	97	56.796	ENSVVUG00000017138	CLP1	93	56.796	Vulpes_vulpes
FBgn0033842	cbc	97	53.140	ENSXETG00000007088	clp1	94	53.382	Xenopus_tropicalis
FBgn0033842	cbc	97	53.589	ENSXCOG00000002287	clp1	95	53.589	Xiphophorus_couchianus
FBgn0033842	cbc	97	53.589	ENSXMAG00000009783	clp1	95	53.589	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000214	tRNA-intron endonuclease complex	-	ISS	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005849	mRNA cleavage factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0043484	regulation of RNA splicing	29606597.	IGI	Process
GO:0043484	regulation of RNA splicing	29606597.	IMP	Process