EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0034065 (Gene tree)
Gene ID: 36766
Gene Symbol: Rrp42
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1143 bases
Position: chr2R:16014908-16016050
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0086348	RNase_PH	PF01138.21	4.6e-23	1	1
FBpp0086348	RNase_PH_C	PF03725.15	2.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0087206	-	981	-	FBpp0086348	296 (aa)	-	Q29QQ9

Gene Model

Click here to download FBgn0034065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0034065's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0034065	Rrp42	99	48.475	ENSG00000075914	EXOSC7	99	48.475	Homo_sapiens
FBgn0034065	Rrp42	99	47.458	ENSAPOG00000023524	exosc7	99	47.458	Acanthochromis_polyacanthus
FBgn0034065	Rrp42	99	48.475	ENSAMEG00000012111	EXOSC7	99	48.475	Ailuropoda_melanoleuca
FBgn0034065	Rrp42	78	43.290	ENSACIG00000007168	exosc7	99	43.290	Amphilophus_citrinellus
FBgn0034065	Rrp42	86	49.020	ENSAOCG00000015133	exosc7	92	49.020	Amphiprion_ocellaris
FBgn0034065	Rrp42	99	47.119	ENSAPEG00000009704	exosc7	99	47.119	Amphiprion_percula
FBgn0034065	Rrp42	99	46.441	ENSATEG00000008157	exosc7	99	46.441	Anabas_testudineus
FBgn0034065	Rrp42	74	40.991	ENSAPLG00000012218	EXOSC7	99	40.991	Anas_platyrhynchos
FBgn0034065	Rrp42	52	39.355	ENSACAG00000023898	-	99	39.355	Anolis_carolinensis
FBgn0034065	Rrp42	99	48.475	ENSANAG00000028607	EXOSC7	99	48.475	Aotus_nancymaae
FBgn0034065	Rrp42	99	46.441	ENSACLG00000007428	exosc7	99	46.441	Astatotilapia_calliptera
FBgn0034065	Rrp42	91	46.642	ENSAMXG00000035439	exosc7	76	52.489	Astyanax_mexicanus
FBgn0034065	Rrp42	99	48.814	ENSBTAG00000018329	EXOSC7	99	48.814	Bos_taurus
FBgn0034065	Rrp42	95	31.699	WBGene00009289	exos-7	98	31.373	Caenorhabditis_elegans
FBgn0034065	Rrp42	99	48.136	ENSCJAG00000001928	EXOSC7	99	48.136	Callithrix_jacchus
FBgn0034065	Rrp42	99	48.475	ENSCAFG00000014055	EXOSC7	99	48.475	Canis_familiaris
FBgn0034065	Rrp42	99	48.475	ENSCAFG00020013315	EXOSC7	99	48.475	Canis_lupus_dingo
FBgn0034065	Rrp42	99	48.475	ENSCHIG00000012995	EXOSC7	99	48.475	Capra_hircus
FBgn0034065	Rrp42	99	49.153	ENSTSYG00000012043	EXOSC7	99	49.153	Carlito_syrichta
FBgn0034065	Rrp42	97	45.993	ENSCAPG00000016467	EXOSC7	97	45.993	Cavia_aperea
FBgn0034065	Rrp42	99	48.136	ENSCPOG00000004937	EXOSC7	99	48.136	Cavia_porcellus
FBgn0034065	Rrp42	99	48.814	ENSCCAG00000028936	EXOSC7	99	48.814	Cebus_capucinus
FBgn0034065	Rrp42	99	49.492	ENSCATG00000036675	EXOSC7	99	49.492	Cercocebus_atys
FBgn0034065	Rrp42	99	48.136	ENSCLAG00000015083	EXOSC7	99	48.136	Chinchilla_lanigera
FBgn0034065	Rrp42	99	49.492	ENSCSAG00000016390	EXOSC7	99	49.492	Chlorocebus_sabaeus
FBgn0034065	Rrp42	99	39.322	ENSCHOG00000001353	EXOSC7	99	39.322	Choloepus_hoffmanni
FBgn0034065	Rrp42	99	47.458	ENSCPBG00000023202	EXOSC7	99	47.458	Chrysemys_picta_bellii
FBgn0034065	Rrp42	95	44.840	ENSCING00000004774	-	96	44.840	Ciona_intestinalis
FBgn0034065	Rrp42	95	44.128	ENSCSAVG00000009360	-	96	43.060	Ciona_savignyi
FBgn0034065	Rrp42	99	49.153	ENSCANG00000041919	EXOSC7	99	49.153	Colobus_angolensis_palliatus
FBgn0034065	Rrp42	99	48.475	ENSCGRG00001000938	Exosc7	99	48.475	Cricetulus_griseus_chok1gshd
FBgn0034065	Rrp42	93	46.377	ENSCGRG00000006887	Exosc7	99	46.377	Cricetulus_griseus_crigri
FBgn0034065	Rrp42	99	46.622	ENSCSEG00000011080	exosc7	99	46.622	Cynoglossus_semilaevis
FBgn0034065	Rrp42	99	48.136	ENSCVAG00000000739	exosc7	99	48.136	Cyprinodon_variegatus
FBgn0034065	Rrp42	99	46.441	ENSDARG00000100060	exosc7	99	46.441	Danio_rerio
FBgn0034065	Rrp42	99	48.814	ENSDNOG00000007964	EXOSC7	99	48.814	Dasypus_novemcinctus
FBgn0034065	Rrp42	92	47.970	ENSDORG00000024905	Exosc7	99	47.970	Dipodomys_ordii
FBgn0034065	Rrp42	72	43.925	ENSETEG00000000374	EXOSC7	76	44.059	Echinops_telfairi
FBgn0034065	Rrp42	52	30.065	ENSEBUG00000008140	exosc8	72	30.667	Eptatretus_burgeri
FBgn0034065	Rrp42	74	36.771	ENSEBUG00000001206	exosc7	98	37.946	Eptatretus_burgeri
FBgn0034065	Rrp42	99	49.492	ENSEASG00005008039	EXOSC7	99	49.492	Equus_asinus_asinus
FBgn0034065	Rrp42	99	49.492	ENSECAG00000006539	EXOSC7	99	49.492	Equus_caballus
FBgn0034065	Rrp42	69	46.829	ENSEEUG00000014205	EXOSC7	70	46.829	Erinaceus_europaeus
FBgn0034065	Rrp42	99	47.797	ENSELUG00000007128	exosc7	99	47.797	Esox_lucius
FBgn0034065	Rrp42	99	48.814	ENSFCAG00000013344	EXOSC7	99	48.814	Felis_catus
FBgn0034065	Rrp42	99	43.729	ENSFALG00000002600	EXOSC7	99	43.729	Ficedula_albicollis
FBgn0034065	Rrp42	99	48.136	ENSFDAG00000012581	EXOSC7	99	48.136	Fukomys_damarensis
FBgn0034065	Rrp42	99	48.475	ENSFHEG00000009565	exosc7	99	48.475	Fundulus_heteroclitus
FBgn0034065	Rrp42	99	45.763	ENSGMOG00000007935	exosc7	99	45.763	Gadus_morhua
FBgn0034065	Rrp42	99	47.119	ENSGALG00000030084	EXOSC7	99	47.119	Gallus_gallus
FBgn0034065	Rrp42	99	47.119	ENSGAFG00000003112	exosc7	99	47.119	Gambusia_affinis
FBgn0034065	Rrp42	99	45.763	ENSGACG00000003085	exosc7	99	45.763	Gasterosteus_aculeatus
FBgn0034065	Rrp42	99	47.797	ENSGAGG00000004111	EXOSC7	90	47.797	Gopherus_agassizii
FBgn0034065	Rrp42	99	49.153	ENSGGOG00000013497	EXOSC7	99	49.153	Gorilla_gorilla
FBgn0034065	Rrp42	99	46.780	ENSHBUG00000009582	exosc7	99	46.780	Haplochromis_burtoni
FBgn0034065	Rrp42	99	48.136	ENSHGLG00000012984	EXOSC7	99	48.136	Heterocephalus_glaber_female
FBgn0034065	Rrp42	94	46.209	ENSHGLG00100005220	EXOSC7	93	46.209	Heterocephalus_glaber_male
FBgn0034065	Rrp42	99	45.763	ENSHCOG00000007761	exosc7	99	45.763	Hippocampus_comes
FBgn0034065	Rrp42	99	47.119	ENSIPUG00000012381	exosc7	99	47.119	Ictalurus_punctatus
FBgn0034065	Rrp42	99	48.814	ENSSTOG00000005892	EXOSC7	99	48.814	Ictidomys_tridecemlineatus
FBgn0034065	Rrp42	99	49.153	ENSJJAG00000010398	Exosc7	99	49.153	Jaculus_jaculus
FBgn0034065	Rrp42	99	46.780	ENSKMAG00000012799	exosc7	99	46.780	Kryptolebias_marmoratus
FBgn0034065	Rrp42	99	47.797	ENSLBEG00000027540	exosc7	99	47.797	Labrus_bergylta
FBgn0034065	Rrp42	99	46.441	ENSLACG00000012065	EXOSC7	99	46.441	Latimeria_chalumnae
FBgn0034065	Rrp42	99	48.136	ENSLOCG00000002116	exosc7	99	48.136	Lepisosteus_oculatus
FBgn0034065	Rrp42	99	49.153	ENSLAFG00000012738	EXOSC7	99	49.153	Loxodonta_africana
FBgn0034065	Rrp42	99	49.492	ENSMFAG00000038326	EXOSC7	99	49.492	Macaca_fascicularis
FBgn0034065	Rrp42	99	49.492	ENSMMUG00000019130	EXOSC7	99	49.492	Macaca_mulatta
FBgn0034065	Rrp42	99	49.492	ENSMNEG00000041567	EXOSC7	99	49.492	Macaca_nemestrina
FBgn0034065	Rrp42	99	49.492	ENSMLEG00000039510	EXOSC7	99	49.492	Mandrillus_leucophaeus
FBgn0034065	Rrp42	99	46.441	ENSMAMG00000002527	exosc7	99	46.441	Mastacembelus_armatus
FBgn0034065	Rrp42	99	46.441	ENSMZEG00005026454	exosc7	99	46.441	Maylandia_zebra
FBgn0034065	Rrp42	99	46.102	ENSMGAG00000011656	EXOSC7	99	46.102	Meleagris_gallopavo
FBgn0034065	Rrp42	99	48.475	ENSMAUG00000016964	Exosc7	99	48.475	Mesocricetus_auratus
FBgn0034065	Rrp42	99	48.814	ENSMICG00000049103	EXOSC7	99	48.814	Microcebus_murinus
FBgn0034065	Rrp42	99	48.814	ENSMOCG00000014605	Exosc7	99	48.814	Microtus_ochrogaster
FBgn0034065	Rrp42	99	47.797	ENSMMOG00000014984	exosc7	99	47.797	Mola_mola
FBgn0034065	Rrp42	99	48.475	ENSMODG00000011261	EXOSC7	99	48.475	Monodelphis_domestica
FBgn0034065	Rrp42	99	47.119	ENSMALG00000009471	exosc7	99	47.119	Monopterus_albus
FBgn0034065	Rrp42	99	49.153	MGP_CAROLIEiJ_G0032854	Exosc7	99	49.153	Mus_caroli
FBgn0034065	Rrp42	99	49.153	ENSMUSG00000025785	Exosc7	99	49.153	Mus_musculus
FBgn0034065	Rrp42	99	49.153	MGP_PahariEiJ_G0015720	Exosc7	99	49.153	Mus_pahari
FBgn0034065	Rrp42	99	49.153	MGP_SPRETEiJ_G0034002	Exosc7	99	49.153	Mus_spretus
FBgn0034065	Rrp42	99	47.797	ENSMPUG00000015336	EXOSC7	90	47.797	Mustela_putorius_furo
FBgn0034065	Rrp42	99	42.712	ENSMLUG00000014256	EXOSC7	99	42.712	Myotis_lucifugus
FBgn0034065	Rrp42	99	47.797	ENSNGAG00000018736	Exosc7	99	47.797	Nannospalax_galili
FBgn0034065	Rrp42	78	42.609	ENSNBRG00000000047	EXOSC7	99	42.609	Neolamprologus_brichardi
FBgn0034065	Rrp42	99	46.441	ENSNBRG00000018223	exosc7	99	46.441	Neolamprologus_brichardi
FBgn0034065	Rrp42	99	49.153	ENSNLEG00000006027	EXOSC7	99	49.153	Nomascus_leucogenys
FBgn0034065	Rrp42	93	45.652	ENSMEUG00000013026	EXOSC7	99	45.652	Notamacropus_eugenii
FBgn0034065	Rrp42	82	44.628	ENSOPRG00000016637	EXOSC7	99	44.628	Ochotona_princeps
FBgn0034065	Rrp42	99	47.458	ENSODEG00000011518	EXOSC7	99	47.458	Octodon_degus
FBgn0034065	Rrp42	99	47.119	ENSONIG00000019664	exosc7	99	47.119	Oreochromis_niloticus
FBgn0034065	Rrp42	92	46.154	ENSOANG00000006807	EXOSC7	97	46.154	Ornithorhynchus_anatinus
FBgn0034065	Rrp42	99	47.797	ENSOCUG00000000939	EXOSC7	99	47.797	Oryctolagus_cuniculus
FBgn0034065	Rrp42	99	47.458	ENSORLG00000002251	exosc7	99	47.458	Oryzias_latipes
FBgn0034065	Rrp42	99	47.458	ENSORLG00020008788	exosc7	99	47.458	Oryzias_latipes_hni
FBgn0034065	Rrp42	99	47.458	ENSORLG00015015968	exosc7	99	47.458	Oryzias_latipes_hsok
FBgn0034065	Rrp42	99	47.797	ENSOMEG00000007979	exosc7	99	47.797	Oryzias_melastigma
FBgn0034065	Rrp42	99	49.153	ENSOGAG00000001011	EXOSC7	99	49.153	Otolemur_garnettii
FBgn0034065	Rrp42	99	48.475	ENSOARG00000011298	EXOSC7	99	48.475	Ovis_aries
FBgn0034065	Rrp42	99	48.814	ENSPPAG00000043557	EXOSC7	99	48.814	Pan_paniscus
FBgn0034065	Rrp42	50	31.013	ENSPPRG00000022630	-	57	31.013	Panthera_pardus
FBgn0034065	Rrp42	99	48.814	ENSPPRG00000006919	EXOSC7	99	48.814	Panthera_pardus
FBgn0034065	Rrp42	93	46.739	ENSPTIG00000013985	EXOSC7	93	46.739	Panthera_tigris_altaica
FBgn0034065	Rrp42	99	48.814	ENSPTRG00000014830	EXOSC7	99	48.814	Pan_troglodytes
FBgn0034065	Rrp42	99	49.492	ENSPANG00000012918	EXOSC7	99	49.492	Papio_anubis
FBgn0034065	Rrp42	99	47.797	ENSPKIG00000014229	exosc7	99	47.797	Paramormyrops_kingsleyae
FBgn0034065	Rrp42	93	45.290	ENSPSIG00000010902	EXOSC7	99	45.290	Pelodiscus_sinensis
FBgn0034065	Rrp42	99	47.119	ENSPMGG00000023830	exosc7	99	47.119	Periophthalmus_magnuspinnatus
FBgn0034065	Rrp42	57	30.178	ENSPMGG00000019387	exosc9	77	30.851	Periophthalmus_magnuspinnatus
FBgn0034065	Rrp42	99	48.475	ENSPEMG00000022845	Exosc7	99	48.475	Peromyscus_maniculatus_bairdii
FBgn0034065	Rrp42	99	47.811	ENSPMAG00000009427	exosc7	99	47.811	Petromyzon_marinus
FBgn0034065	Rrp42	99	48.475	ENSPCIG00000025150	EXOSC7	99	48.475	Phascolarctos_cinereus
FBgn0034065	Rrp42	99	46.780	ENSPFOG00000005301	exosc7	99	46.780	Poecilia_formosa
FBgn0034065	Rrp42	99	42.712	ENSPLAG00000016410	exosc7	99	42.712	Poecilia_latipinna
FBgn0034065	Rrp42	51	32.680	ENSPMEG00000023498	-	68	30.065	Poecilia_mexicana
FBgn0034065	Rrp42	99	46.102	ENSPMEG00000019419	exosc7	99	46.102	Poecilia_mexicana
FBgn0034065	Rrp42	68	57.143	ENSPREG00000017921	exosc7	93	57.143	Poecilia_reticulata
FBgn0034065	Rrp42	99	48.814	ENSPPYG00000013949	-	99	48.814	Pongo_abelii
FBgn0034065	Rrp42	99	48.475	ENSPCAG00000001772	EXOSC7	99	46.780	Procavia_capensis
FBgn0034065	Rrp42	93	47.101	ENSPCOG00000024892	EXOSC7	99	47.101	Propithecus_coquereli
FBgn0034065	Rrp42	99	48.136	ENSPVAG00000012445	EXOSC7	99	48.136	Pteropus_vampyrus
FBgn0034065	Rrp42	99	46.441	ENSPNYG00000016020	exosc7	99	46.441	Pundamilia_nyererei
FBgn0034065	Rrp42	99	47.119	ENSPNAG00000015645	exosc7	99	47.119	Pygocentrus_nattereri
FBgn0034065	Rrp42	99	48.814	ENSRNOG00000060337	Exosc7	99	48.814	Rattus_norvegicus
FBgn0034065	Rrp42	99	49.153	ENSRBIG00000040862	EXOSC7	99	49.153	Rhinopithecus_bieti
FBgn0034065	Rrp42	99	49.153	ENSRROG00000038150	EXOSC7	99	49.153	Rhinopithecus_roxellana
FBgn0034065	Rrp42	99	48.475	ENSSBOG00000032667	EXOSC7	99	48.475	Saimiri_boliviensis_boliviensis
FBgn0034065	Rrp42	98	45.085	ENSSHAG00000003370	EXOSC7	98	45.085	Sarcophilus_harrisii
FBgn0034065	Rrp42	99	47.119	ENSSFOG00015022389	exosc7	99	47.119	Scleropages_formosus
FBgn0034065	Rrp42	99	46.780	ENSSMAG00000020361	exosc7	99	46.780	Scophthalmus_maximus
FBgn0034065	Rrp42	99	46.780	ENSSDUG00000019570	exosc7	99	46.780	Seriola_dumerili
FBgn0034065	Rrp42	99	47.119	ENSSLDG00000024102	exosc7	99	47.119	Seriola_lalandi_dorsalis
FBgn0034065	Rrp42	97	40.418	ENSSARG00000005380	EXOSC7	99	40.418	Sorex_araneus
FBgn0034065	Rrp42	99	46.102	ENSSPUG00000011166	EXOSC7	99	46.102	Sphenodon_punctatus
FBgn0034065	Rrp42	99	46.780	ENSSPAG00000004284	exosc7	99	46.780	Stegastes_partitus
FBgn0034065	Rrp42	99	48.136	ENSSSCG00000011300	EXOSC7	99	48.136	Sus_scrofa
FBgn0034065	Rrp42	98	44.483	ENSTGUG00000004961	EXOSC7	99	44.483	Taeniopygia_guttata
FBgn0034065	Rrp42	99	47.797	ENSTRUG00000008320	exosc7	99	47.797	Takifugu_rubripes
FBgn0034065	Rrp42	99	47.119	ENSTNIG00000003617	exosc7	99	47.119	Tetraodon_nigroviridis
FBgn0034065	Rrp42	99	48.475	ENSTTRG00000007189	EXOSC7	99	48.475	Tursiops_truncatus
FBgn0034065	Rrp42	99	44.068	ENSUAMG00000004308	EXOSC7	99	44.068	Ursus_americanus
FBgn0034065	Rrp42	99	44.863	ENSUMAG00000005714	EXOSC7	99	44.863	Ursus_maritimus
FBgn0034065	Rrp42	92	39.706	ENSVPAG00000004346	EXOSC7	99	39.706	Vicugna_pacos
FBgn0034065	Rrp42	99	48.475	ENSVVUG00000007036	EXOSC7	99	48.475	Vulpes_vulpes
FBgn0034065	Rrp42	100	44.595	ENSXETG00000020144	exosc7	100	44.595	Xenopus_tropicalis
FBgn0034065	Rrp42	78	43.043	ENSXCOG00000019573	exosc7	99	43.043	Xiphophorus_couchianus
FBgn0034065	Rrp42	99	46.441	ENSXMAG00000014296	exosc7	99	46.441	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	IDA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	ISS	Component
GO:0000177	cytoplasmic exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	12483225.	IDA	Component
GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005652	nuclear lamina	16407406.	IDA	Component
GO:0005737	cytoplasm	16407406.	IDA	Component
GO:0016075	rRNA catabolic process	21873635.	IBA	Process
GO:0017091	AU-rich element binding	21873635.	IBA	Function
GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	21873635.	IBA	Process
GO:0034473	U1 snRNA 3'-end processing	21873635.	IBA	Process
GO:0034475	U4 snRNA 3'-end processing	21873635.	IBA	Process
GO:0034476	U5 snRNA 3'-end processing	21873635.	IBA	Process
GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	21873635.	IBA	Process
GO:0071028	nuclear mRNA surveillance	21873635.	IBA	Process
GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	21873635.	IBA	Process
GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process	21873635.	IBA	Process
GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process	21873635.	IBA	Process