EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0034564 (Gene tree)
Gene ID: 37372
Gene Symbol: CG9344
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 545 bases
Position: chr2R:20977056-20977600
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071449	LSM	PF01423.22	4.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071520	-	474	-	FBpp0071449	79 (aa)	-	Q9W2P5

Gene Model

Click here to download FBgn0034564's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0034564's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0034564	CG9344	72	35.088	FBgn0261791	SNRPG	75	35.088
FBgn0034564	CG9344	80	49.206	FBgn0000426	SmF	72	49.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0034564	CG9344	97	85.714	ENSG00000164167	LSM6	96	85.714	Homo_sapiens
FBgn0034564	CG9344	97	83.117	ENSAPOG00000019832	lsm6	96	83.117	Acanthochromis_polyacanthus
FBgn0034564	CG9344	97	85.714	ENSAMEG00000016671	LSM6	96	85.714	Ailuropoda_melanoleuca
FBgn0034564	CG9344	97	83.117	ENSACIG00000016711	lsm6	96	83.117	Amphilophus_citrinellus
FBgn0034564	CG9344	97	83.117	ENSAOCG00000002110	lsm6	50	83.117	Amphiprion_ocellaris
FBgn0034564	CG9344	97	83.117	ENSAPEG00000023992	lsm6	96	83.117	Amphiprion_percula
FBgn0034564	CG9344	97	83.117	ENSATEG00000012610	lsm6	96	83.117	Anabas_testudineus
FBgn0034564	CG9344	97	85.714	ENSAPLG00000012594	LSM6	99	85.714	Anas_platyrhynchos
FBgn0034564	CG9344	97	85.714	ENSACAG00000004004	LSM6	96	85.714	Anolis_carolinensis
FBgn0034564	CG9344	97	75.325	ENSANAG00000021839	-	96	75.325	Aotus_nancymaae
FBgn0034564	CG9344	97	85.714	ENSANAG00000030568	-	96	85.714	Aotus_nancymaae
FBgn0034564	CG9344	97	83.117	ENSACLG00000025621	lsm6	96	83.117	Astatotilapia_calliptera
FBgn0034564	CG9344	97	81.818	ENSAMXG00000038738	lsm6	96	81.818	Astyanax_mexicanus
FBgn0034564	CG9344	96	82.895	ENSBTAG00000052085	-	95	82.895	Bos_taurus
FBgn0034564	CG9344	97	85.714	ENSBTAG00000014060	LSM6	96	85.714	Bos_taurus
FBgn0034564	CG9344	97	71.429	WBGene00003080	lsm-6	100	71.429	Caenorhabditis_elegans
FBgn0034564	CG9344	97	85.714	ENSCJAG00000002482	LSM6	96	85.714	Callithrix_jacchus
FBgn0034564	CG9344	97	85.714	ENSCAFG00000007738	LSM6	96	85.714	Canis_familiaris
FBgn0034564	CG9344	97	85.714	ENSCAFG00020025902	LSM6	96	85.714	Canis_lupus_dingo
FBgn0034564	CG9344	97	71.429	ENSCHIG00000024198	-	91	71.429	Capra_hircus
FBgn0034564	CG9344	86	85.294	ENSCHIG00000012864	-	96	85.294	Capra_hircus
FBgn0034564	CG9344	97	85.714	ENSCHIG00000010334	-	96	85.714	Capra_hircus
FBgn0034564	CG9344	97	85.714	ENSTSYG00000026972	LSM6	96	85.714	Carlito_syrichta
FBgn0034564	CG9344	77	83.607	ENSTSYG00000012759	-	80	83.607	Carlito_syrichta
FBgn0034564	CG9344	78	80.645	ENSCAPG00000011179	-	95	80.645	Cavia_aperea
FBgn0034564	CG9344	97	85.714	ENSCAPG00000008104	LSM6	96	85.714	Cavia_aperea
FBgn0034564	CG9344	97	85.714	ENSCPOG00000032655	LSM6	96	85.714	Cavia_porcellus
FBgn0034564	CG9344	97	85.714	ENSCCAG00000036437	LSM6	96	85.714	Cebus_capucinus
FBgn0034564	CG9344	97	85.714	ENSCCAG00000020665	-	96	85.714	Cebus_capucinus
FBgn0034564	CG9344	96	59.211	ENSCATG00000038799	-	94	59.211	Cercocebus_atys
FBgn0034564	CG9344	97	85.714	ENSCATG00000002770	-	96	85.714	Cercocebus_atys
FBgn0034564	CG9344	97	85.714	ENSCLAG00000005495	LSM6	96	85.714	Chinchilla_lanigera
FBgn0034564	CG9344	89	69.014	ENSCLAG00000005685	-	100	69.014	Chinchilla_lanigera
FBgn0034564	CG9344	97	85.714	ENSCSAG00000003421	LSM6	96	85.714	Chlorocebus_sabaeus
FBgn0034564	CG9344	97	63.636	ENSCHOG00000003420	LSM6	95	63.636	Choloepus_hoffmanni
FBgn0034564	CG9344	97	85.714	ENSCPBG00000027472	LSM6	81	85.714	Chrysemys_picta_bellii
FBgn0034564	CG9344	99	84.615	ENSCING00000019152	-	95	84.615	Ciona_intestinalis
FBgn0034564	CG9344	99	84.615	ENSCSAVG00000002065	-	95	84.615	Ciona_savignyi
FBgn0034564	CG9344	97	58.442	ENSCANG00000035214	-	96	58.442	Colobus_angolensis_palliatus
FBgn0034564	CG9344	97	85.714	ENSCANG00000006849	-	96	85.714	Colobus_angolensis_palliatus
FBgn0034564	CG9344	97	85.714	ENSCANG00000041263	-	96	85.714	Colobus_angolensis_palliatus
FBgn0034564	CG9344	97	85.714	ENSCGRG00001017142	Lsm6	96	85.714	Cricetulus_griseus_chok1gshd
FBgn0034564	CG9344	97	85.714	ENSCGRG00000008320	Lsm6	96	85.714	Cricetulus_griseus_crigri
FBgn0034564	CG9344	97	83.117	ENSCSEG00000000423	lsm6	96	83.117	Cynoglossus_semilaevis
FBgn0034564	CG9344	97	83.117	ENSCVAG00000001592	lsm6	96	83.117	Cyprinodon_variegatus
FBgn0034564	CG9344	97	81.818	ENSDARG00000036995	lsm6	96	81.818	Danio_rerio
FBgn0034564	CG9344	97	84.416	ENSDNOG00000044848	-	96	84.416	Dasypus_novemcinctus
FBgn0034564	CG9344	95	76.623	ENSDNOG00000040186	-	83	76.623	Dasypus_novemcinctus
FBgn0034564	CG9344	97	85.714	ENSDORG00000000933	Lsm6	96	85.714	Dipodomys_ordii
FBgn0034564	CG9344	61	95.833	ENSETEG00000013098	LSM6	100	95.833	Echinops_telfairi
FBgn0034564	CG9344	97	87.013	ENSEBUG00000017073	lsm6	96	87.013	Eptatretus_burgeri
FBgn0034564	CG9344	84	84.848	ENSEASG00005001533	LSM6	69	84.848	Equus_asinus_asinus
FBgn0034564	CG9344	97	85.714	ENSECAG00000021036	LSM6	96	85.714	Equus_caballus
FBgn0034564	CG9344	61	95.833	ENSEEUG00000002101	LSM6	62	95.833	Erinaceus_europaeus
FBgn0034564	CG9344	97	81.818	ENSELUG00000014301	LSM6	96	81.818	Esox_lucius
FBgn0034564	CG9344	97	85.714	ENSFCAG00000003047	LSM6	96	85.714	Felis_catus
FBgn0034564	CG9344	97	85.714	ENSFALG00000005509	LSM6	89	85.714	Ficedula_albicollis
FBgn0034564	CG9344	97	74.026	ENSFDAG00000019073	-	96	74.026	Fukomys_damarensis
FBgn0034564	CG9344	97	85.714	ENSFDAG00000020913	-	96	85.714	Fukomys_damarensis
FBgn0034564	CG9344	97	83.117	ENSFHEG00000007948	lsm6	96	83.117	Fundulus_heteroclitus
FBgn0034564	CG9344	97	83.117	ENSGMOG00000015550	lsm6	96	83.117	Gadus_morhua
FBgn0034564	CG9344	97	85.714	ENSGALG00000009985	LSM6	96	85.714	Gallus_gallus
FBgn0034564	CG9344	97	83.117	ENSGAFG00000017763	lsm6	96	83.117	Gambusia_affinis
FBgn0034564	CG9344	96	82.895	ENSGACG00000017223	lsm6	95	82.895	Gasterosteus_aculeatus
FBgn0034564	CG9344	97	85.714	ENSGAGG00000020980	LSM6	96	85.714	Gopherus_agassizii
FBgn0034564	CG9344	97	85.714	ENSGGOG00000001310	LSM6	96	85.714	Gorilla_gorilla
FBgn0034564	CG9344	97	83.117	ENSHBUG00000008618	lsm6	96	83.117	Haplochromis_burtoni
FBgn0034564	CG9344	97	85.714	ENSHGLG00000000205	LSM6	96	85.714	Heterocephalus_glaber_female
FBgn0034564	CG9344	97	85.714	ENSHGLG00100014341	LSM6	96	85.714	Heterocephalus_glaber_male
FBgn0034564	CG9344	97	81.818	ENSHCOG00000005591	lsm6	96	81.818	Hippocampus_comes
FBgn0034564	CG9344	97	81.818	ENSIPUG00000004508	lsm6	96	81.818	Ictalurus_punctatus
FBgn0034564	CG9344	97	85.714	ENSSTOG00000002678	LSM6	96	85.714	Ictidomys_tridecemlineatus
FBgn0034564	CG9344	100	67.089	ENSJJAG00000016942	-	100	67.089	Jaculus_jaculus
FBgn0034564	CG9344	97	85.714	ENSJJAG00000013845	-	96	85.714	Jaculus_jaculus
FBgn0034564	CG9344	97	77.922	ENSJJAG00000011211	-	96	77.922	Jaculus_jaculus
FBgn0034564	CG9344	97	83.117	ENSKMAG00000004105	lsm6	96	83.117	Kryptolebias_marmoratus
FBgn0034564	CG9344	97	83.117	ENSLBEG00000018441	lsm6	96	83.117	Labrus_bergylta
FBgn0034564	CG9344	97	85.714	ENSLACG00000006937	LSM6	96	85.714	Latimeria_chalumnae
FBgn0034564	CG9344	97	81.818	ENSLOCG00000008852	lsm6	96	81.818	Lepisosteus_oculatus
FBgn0034564	CG9344	97	80.519	ENSLOCG00000017683	-	96	80.519	Lepisosteus_oculatus
FBgn0034564	CG9344	97	85.714	ENSLAFG00000001952	LSM6	96	85.714	Loxodonta_africana
FBgn0034564	CG9344	97	85.714	ENSMFAG00000033073	LSM6	96	85.714	Macaca_fascicularis
FBgn0034564	CG9344	97	59.740	ENSMNEG00000040412	-	96	59.740	Macaca_nemestrina
FBgn0034564	CG9344	97	85.714	ENSMNEG00000034820	-	96	85.714	Macaca_nemestrina
FBgn0034564	CG9344	97	85.714	ENSMLEG00000035153	LSM6	96	85.714	Mandrillus_leucophaeus
FBgn0034564	CG9344	97	83.117	ENSMAMG00000014029	lsm6	96	83.117	Mastacembelus_armatus
FBgn0034564	CG9344	97	83.117	ENSMZEG00005009146	lsm6	96	83.117	Maylandia_zebra
FBgn0034564	CG9344	97	85.714	ENSMGAG00000003802	LSM6	96	85.714	Meleagris_gallopavo
FBgn0034564	CG9344	97	85.714	ENSMAUG00000014938	Lsm6	96	85.714	Mesocricetus_auratus
FBgn0034564	CG9344	97	85.714	ENSMICG00000042599	LSM6	96	85.714	Microcebus_murinus
FBgn0034564	CG9344	95	77.333	ENSMICG00000047411	-	88	77.333	Microcebus_murinus
FBgn0034564	CG9344	97	85.714	ENSMOCG00000020049	Lsm6	96	85.714	Microtus_ochrogaster
FBgn0034564	CG9344	97	83.117	ENSMMOG00000005470	lsm6	96	83.117	Mola_mola
FBgn0034564	CG9344	97	76.623	ENSMMOG00000007379	-	96	76.623	Mola_mola
FBgn0034564	CG9344	97	85.714	ENSMODG00000000526	LSM6	96	85.714	Monodelphis_domestica
FBgn0034564	CG9344	97	83.117	ENSMALG00000002419	lsm6	96	83.117	Monopterus_albus
FBgn0034564	CG9344	97	85.714	MGP_CAROLIEiJ_G0031245	Lsm6	96	85.714	Mus_caroli
FBgn0034564	CG9344	97	85.714	ENSMUSG00000031683	Lsm6	96	85.714	Mus_musculus
FBgn0034564	CG9344	97	85.714	MGP_PahariEiJ_G0022851	Lsm6	96	85.714	Mus_pahari
FBgn0034564	CG9344	97	85.714	MGP_SPRETEiJ_G0032365	Lsm6	96	85.714	Mus_spretus
FBgn0034564	CG9344	96	86.842	ENSMPUG00000006936	LSM6	88	86.842	Mustela_putorius_furo
FBgn0034564	CG9344	97	85.714	ENSMLUG00000026355	LSM6	96	85.714	Myotis_lucifugus
FBgn0034564	CG9344	97	85.714	ENSNGAG00000019116	Lsm6	96	85.714	Nannospalax_galili
FBgn0034564	CG9344	97	83.117	ENSNBRG00000004887	lsm6	96	83.117	Neolamprologus_brichardi
FBgn0034564	CG9344	97	85.714	ENSNLEG00000005584	LSM6	96	85.714	Nomascus_leucogenys
FBgn0034564	CG9344	97	84.416	ENSOPRG00000011199	LSM6	96	84.416	Ochotona_princeps
FBgn0034564	CG9344	97	83.117	ENSODEG00000019419	-	96	83.117	Octodon_degus
FBgn0034564	CG9344	94	78.378	ENSODEG00000018684	-	96	78.378	Octodon_degus
FBgn0034564	CG9344	97	83.117	ENSODEG00000020420	-	96	83.117	Octodon_degus
FBgn0034564	CG9344	97	84.416	ENSODEG00000002307	-	96	84.416	Octodon_degus
FBgn0034564	CG9344	97	83.117	ENSONIG00000010005	lsm6	96	83.117	Oreochromis_niloticus
FBgn0034564	CG9344	75	83.051	ENSOANG00000006895	-	78	83.051	Ornithorhynchus_anatinus
FBgn0034564	CG9344	75	83.051	ENSOANG00000006894	-	78	83.051	Ornithorhynchus_anatinus
FBgn0034564	CG9344	97	83.117	ENSORLG00000024158	lsm6	96	83.117	Oryzias_latipes
FBgn0034564	CG9344	97	83.117	ENSORLG00020017383	lsm6	96	83.117	Oryzias_latipes_hni
FBgn0034564	CG9344	97	83.117	ENSORLG00015016903	lsm6	96	83.117	Oryzias_latipes_hsok
FBgn0034564	CG9344	97	83.117	ENSOMEG00000000074	lsm6	96	83.117	Oryzias_melastigma
FBgn0034564	CG9344	97	85.714	ENSOGAG00000026665	-	96	85.714	Otolemur_garnettii
FBgn0034564	CG9344	97	85.714	ENSOGAG00000033153	-	96	85.714	Otolemur_garnettii
FBgn0034564	CG9344	84	84.848	ENSOARG00000008509	-	85	84.848	Ovis_aries
FBgn0034564	CG9344	96	82.895	ENSOARG00000011641	-	88	82.895	Ovis_aries
FBgn0034564	CG9344	97	85.714	ENSPPAG00000037929	LSM6	96	85.714	Pan_paniscus
FBgn0034564	CG9344	97	85.714	ENSPPRG00000012806	LSM6	96	85.714	Panthera_pardus
FBgn0034564	CG9344	97	85.714	ENSPTIG00000019769	LSM6	96	85.714	Panthera_tigris_altaica
FBgn0034564	CG9344	97	85.714	ENSPTRG00000016488	LSM6	96	85.714	Pan_troglodytes
FBgn0034564	CG9344	97	85.714	ENSPANG00000006552	LSM6	96	85.714	Papio_anubis
FBgn0034564	CG9344	97	81.818	ENSPKIG00000016176	lsm6	96	81.818	Paramormyrops_kingsleyae
FBgn0034564	CG9344	97	85.714	ENSPSIG00000016942	LSM6	96	85.714	Pelodiscus_sinensis
FBgn0034564	CG9344	97	83.117	ENSPMGG00000018004	lsm6	96	83.117	Periophthalmus_magnuspinnatus
FBgn0034564	CG9344	97	85.714	ENSPEMG00000012410	Lsm6	96	85.714	Peromyscus_maniculatus_bairdii
FBgn0034564	CG9344	97	85.714	ENSPMAG00000006949	lsm6	96	85.714	Petromyzon_marinus
FBgn0034564	CG9344	97	85.714	ENSPCIG00000023469	LSM6	77	84.848	Phascolarctos_cinereus
FBgn0034564	CG9344	97	83.117	ENSPFOG00000008881	lsm6	96	83.117	Poecilia_formosa
FBgn0034564	CG9344	97	83.117	ENSPLAG00000003202	lsm6	96	83.117	Poecilia_latipinna
FBgn0034564	CG9344	97	83.117	ENSPMEG00000004000	lsm6	96	83.117	Poecilia_mexicana
FBgn0034564	CG9344	97	83.117	ENSPREG00000023235	lsm6	96	83.117	Poecilia_reticulata
FBgn0034564	CG9344	97	85.714	ENSPPYG00000015105	LSM6	96	85.714	Pongo_abelii
FBgn0034564	CG9344	97	85.714	ENSPCOG00000013899	LSM6	96	85.714	Propithecus_coquereli
FBgn0034564	CG9344	97	83.117	ENSPNYG00000012614	lsm6	96	83.117	Pundamilia_nyererei
FBgn0034564	CG9344	97	81.818	ENSPNAG00000018779	lsm6	96	81.818	Pygocentrus_nattereri
FBgn0034564	CG9344	97	85.714	ENSRNOG00000030374	Lsm6	96	85.714	Rattus_norvegicus
FBgn0034564	CG9344	97	85.714	ENSRNOG00000049370	LOC100360750	96	85.714	Rattus_norvegicus
FBgn0034564	CG9344	97	85.714	ENSRBIG00000027878	LSM6	96	85.714	Rhinopithecus_bieti
FBgn0034564	CG9344	97	85.714	ENSRROG00000024868	LSM6	96	85.714	Rhinopithecus_roxellana
FBgn0034564	CG9344	87	38.356	YDR378C	-	85	42.466	Saccharomyces_cerevisiae
FBgn0034564	CG9344	96	61.842	ENSSBOG00000028103	-	94	61.842	Saimiri_boliviensis_boliviensis
FBgn0034564	CG9344	97	85.714	ENSSBOG00000021229	-	96	85.714	Saimiri_boliviensis_boliviensis
FBgn0034564	CG9344	97	81.818	ENSSFOG00015016480	lsm6	96	81.818	Scleropages_formosus
FBgn0034564	CG9344	97	83.117	ENSSMAG00000004550	lsm6	96	83.117	Scophthalmus_maximus
FBgn0034564	CG9344	84	81.818	ENSSLDG00000004136	-	57	81.818	Seriola_lalandi_dorsalis
FBgn0034564	CG9344	97	83.117	ENSSLDG00000020533	lsm6	80	83.117	Seriola_lalandi_dorsalis
FBgn0034564	CG9344	61	95.833	ENSSARG00000000689	LSM6	100	95.833	Sorex_araneus
FBgn0034564	CG9344	97	85.714	ENSSPUG00000008657	LSM6	96	85.714	Sphenodon_punctatus
FBgn0034564	CG9344	97	83.117	ENSSPAG00000003246	lsm6	96	83.117	Stegastes_partitus
FBgn0034564	CG9344	97	85.714	ENSSSCG00000035973	LSM6	96	85.714	Sus_scrofa
FBgn0034564	CG9344	97	85.714	ENSTGUG00000002663	LSM6	96	85.714	Taeniopygia_guttata
FBgn0034564	CG9344	97	83.117	ENSTRUG00000023398	lsm6	96	83.117	Takifugu_rubripes
FBgn0034564	CG9344	97	83.117	ENSTNIG00000017725	lsm6	96	83.117	Tetraodon_nigroviridis
FBgn0034564	CG9344	97	85.714	ENSTTRG00000004609	LSM6	96	85.714	Tursiops_truncatus
FBgn0034564	CG9344	95	77.333	ENSUAMG00000014213	LSM6	61	77.333	Ursus_americanus
FBgn0034564	CG9344	95	77.333	ENSUMAG00000015727	LSM6	61	77.333	Ursus_maritimus
FBgn0034564	CG9344	97	85.714	ENSVPAG00000006922	LSM6	96	85.714	Vicugna_pacos
FBgn0034564	CG9344	97	85.714	ENSVVUG00000009254	LSM6	66	85.714	Vulpes_vulpes
FBgn0034564	CG9344	97	85.714	ENSXETG00000023683	lsm6	96	85.714	Xenopus_tropicalis
FBgn0034564	CG9344	97	83.117	ENSXMAG00000009606	lsm6	96	83.117	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003723	RNA binding	-	ISS	Function
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005688	U6 snRNP	10908584.	NAS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	-	IEA	Component
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component