EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0034879 (Gene tree)
Gene ID: 37731
Gene Symbol: Rrp4
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1200 bases
Position: chr2R:23555018-23556217
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072020	ECR1_N	PF14382.6	4.2e-13	1	1
FBpp0309932	ECR1_N	PF14382.6	4.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0343267	-	1049	-	FBpp0309932	298 (aa)	-	M9THE4
FBtr0072111	-	1137	-	FBpp0072020	298 (aa)	-	Q9W1M9

Gene Model

Click here to download FBgn0034879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0034879's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0034879	Rrp4	89	61.132	ENSG00000130713	EXOSC2	89	61.450	Homo_sapiens
FBgn0034879	Rrp4	88	61.832	ENSAPOG00000008861	exosc2	95	60.687	Acanthochromis_polyacanthus
FBgn0034879	Rrp4	91	60.000	ENSAMEG00000016239	EXOSC2	89	61.450	Ailuropoda_melanoleuca
FBgn0034879	Rrp4	92	60.364	ENSACIG00000019054	exosc2	96	56.849	Amphilophus_citrinellus
FBgn0034879	Rrp4	97	58.131	ENSAOCG00000008577	exosc2	89	61.450	Amphiprion_ocellaris
FBgn0034879	Rrp4	97	58.131	ENSAOCG00000004983	exosc2	89	61.450	Amphiprion_ocellaris
FBgn0034879	Rrp4	97	58.131	ENSAPEG00000014088	exosc2	89	61.450	Amphiprion_percula
FBgn0034879	Rrp4	92	60.364	ENSATEG00000018680	exosc2	93	59.273	Anabas_testudineus
FBgn0034879	Rrp4	91	61.029	ENSAPLG00000012516	EXOSC2	93	60.662	Anas_platyrhynchos
FBgn0034879	Rrp4	89	61.887	ENSACAG00000002706	EXOSC2	89	61.977	Anolis_carolinensis
FBgn0034879	Rrp4	92	61.455	ENSACLG00000013613	exosc2	93	60.364	Astatotilapia_calliptera
FBgn0034879	Rrp4	91	61.255	ENSAMXG00000042605	exosc2	92	60.073	Astyanax_mexicanus
FBgn0034879	Rrp4	91	59.630	ENSBTAG00000048071	EXOSC2	91	59.630	Bos_taurus
FBgn0034879	Rrp4	90	44.074	WBGene00022232	exos-2	89	44.074	Caenorhabditis_elegans
FBgn0034879	Rrp4	89	61.509	ENSCJAG00000020537	EXOSC2	89	61.832	Callithrix_jacchus
FBgn0034879	Rrp4	88	61.069	ENSCAFG00000019941	EXOSC2	89	60.687	Canis_familiaris
FBgn0034879	Rrp4	91	59.259	ENSCAFG00020024047	EXOSC2	89	60.687	Canis_lupus_dingo
FBgn0034879	Rrp4	91	59.630	ENSCHIG00000021398	EXOSC2	91	59.630	Capra_hircus
FBgn0034879	Rrp4	91	59.630	ENSTSYG00000001805	EXOSC2	91	59.259	Carlito_syrichta
FBgn0034879	Rrp4	85	62.055	ENSCPOG00000005902	EXOSC2	86	61.660	Cavia_porcellus
FBgn0034879	Rrp4	89	61.132	ENSCCAG00000019749	EXOSC2	89	61.450	Cebus_capucinus
FBgn0034879	Rrp4	89	60.755	ENSCATG00000025389	-	89	61.069	Cercocebus_atys
FBgn0034879	Rrp4	91	59.630	ENSCLAG00000006195	EXOSC2	91	59.259	Chinchilla_lanigera
FBgn0034879	Rrp4	89	60.755	ENSCSAG00000014760	EXOSC2	89	61.069	Chlorocebus_sabaeus
FBgn0034879	Rrp4	91	59.630	ENSCHOG00000000858	EXOSC2	91	59.259	Choloepus_hoffmanni
FBgn0034879	Rrp4	97	59.589	ENSCPBG00000022626	EXOSC2	98	59.247	Chrysemys_picta_bellii
FBgn0034879	Rrp4	90	59.779	ENSCING00000014934	-	89	58.519	Ciona_intestinalis
FBgn0034879	Rrp4	82	59.514	ENSCSAVG00000003684	-	89	59.756	Ciona_savignyi
FBgn0034879	Rrp4	91	55.556	ENSCANG00000029298	-	88	56.870	Colobus_angolensis_palliatus
FBgn0034879	Rrp4	89	60.755	ENSCANG00000039828	-	89	61.069	Colobus_angolensis_palliatus
FBgn0034879	Rrp4	91	58.889	ENSCGRG00001013981	Exosc2	91	58.519	Cricetulus_griseus_chok1gshd
FBgn0034879	Rrp4	91	58.889	ENSCGRG00000017629	Exosc2	91	58.519	Cricetulus_griseus_crigri
FBgn0034879	Rrp4	93	59.928	ENSCSEG00000016539	exosc2	95	59.567	Cynoglossus_semilaevis
FBgn0034879	Rrp4	97	58.131	ENSCVAG00000022260	exosc2	89	61.450	Cyprinodon_variegatus
FBgn0034879	Rrp4	91	59.779	ENSDARG00000028688	exosc2	93	58.182	Danio_rerio
FBgn0034879	Rrp4	84	63.052	ENSDNOG00000025767	-	93	62.651	Dasypus_novemcinctus
FBgn0034879	Rrp4	91	59.630	ENSDORG00000009238	Exosc2	91	59.259	Dipodomys_ordii
FBgn0034879	Rrp4	88	47.893	ENSETEG00000016130	-	93	47.893	Echinops_telfairi
FBgn0034879	Rrp4	91	60.370	ENSEASG00005008475	EXOSC2	79	60.000	Equus_asinus_asinus
FBgn0034879	Rrp4	91	60.370	ENSECAG00000007897	EXOSC2	79	60.000	Equus_caballus
FBgn0034879	Rrp4	95	58.099	ENSELUG00000013641	exosc2	92	57.394	Esox_lucius
FBgn0034879	Rrp4	91	59.630	ENSFCAG00000025936	EXOSC2	89	61.450	Felis_catus
FBgn0034879	Rrp4	93	60.072	ENSFALG00000001446	EXOSC2	94	60.072	Ficedula_albicollis
FBgn0034879	Rrp4	91	59.630	ENSFDAG00000017196	EXOSC2	89	61.069	Fukomys_damarensis
FBgn0034879	Rrp4	97	58.824	ENSFHEG00000018571	exosc2	98	57.785	Fundulus_heteroclitus
FBgn0034879	Rrp4	88	58.779	ENSGMOG00000011785	exosc2	88	58.015	Gadus_morhua
FBgn0034879	Rrp4	89	62.121	ENSGALG00000040373	EXOSC2	89	61.742	Gallus_gallus
FBgn0034879	Rrp4	97	58.824	ENSGAFG00000010283	exosc2	98	57.785	Gambusia_affinis
FBgn0034879	Rrp4	92	59.273	ENSGACG00000016805	exosc2	91	65.132	Gasterosteus_aculeatus
FBgn0034879	Rrp4	85	64.683	ENSGAGG00000021026	EXOSC2	94	64.286	Gopherus_agassizii
FBgn0034879	Rrp4	89	60.377	ENSGGOG00000010578	EXOSC2	90	60.000	Gorilla_gorilla
FBgn0034879	Rrp4	92	61.091	ENSHBUG00000022437	exosc2	93	60.000	Haplochromis_burtoni
FBgn0034879	Rrp4	91	59.630	ENSHGLG00000012834	EXOSC2	89	61.069	Heterocephalus_glaber_female
FBgn0034879	Rrp4	91	59.630	ENSHGLG00100007092	EXOSC2	89	61.069	Heterocephalus_glaber_male
FBgn0034879	Rrp4	96	58.885	ENSHCOG00000019130	exosc2	94	57.840	Hippocampus_comes
FBgn0034879	Rrp4	89	63.636	ENSIPUG00000015397	exosc2	89	62.879	Ictalurus_punctatus
FBgn0034879	Rrp4	91	59.259	ENSSTOG00000005999	EXOSC2	89	60.687	Ictidomys_tridecemlineatus
FBgn0034879	Rrp4	91	59.259	ENSJJAG00000003188	Exosc2	91	58.889	Jaculus_jaculus
FBgn0034879	Rrp4	97	58.681	ENSKMAG00000017397	exosc2	90	61.832	Kryptolebias_marmoratus
FBgn0034879	Rrp4	90	60.370	ENSLBEG00000019269	exosc2	91	59.480	Labrus_bergylta
FBgn0034879	Rrp4	92	62.637	ENSLACG00000015530	EXOSC2	92	62.271	Latimeria_chalumnae
FBgn0034879	Rrp4	91	59.779	ENSLAFG00000006984	EXOSC2	91	59.410	Loxodonta_africana
FBgn0034879	Rrp4	89	52.256	ENSMFAG00000034160	-	75	52.256	Macaca_fascicularis
FBgn0034879	Rrp4	89	60.755	ENSMFAG00000000597	-	89	61.069	Macaca_fascicularis
FBgn0034879	Rrp4	89	58.868	ENSMMUG00000012498	EXOSC2	88	59.160	Macaca_mulatta
FBgn0034879	Rrp4	89	52.256	ENSMNEG00000028704	-	82	52.256	Macaca_nemestrina
FBgn0034879	Rrp4	89	60.755	ENSMNEG00000031861	-	89	61.069	Macaca_nemestrina
FBgn0034879	Rrp4	89	51.880	ENSMLEG00000029891	-	80	52.672	Mandrillus_leucophaeus
FBgn0034879	Rrp4	89	60.755	ENSMLEG00000042587	-	89	61.069	Mandrillus_leucophaeus
FBgn0034879	Rrp4	88	62.977	ENSMAMG00000012466	exosc2	91	62.800	Mastacembelus_armatus
FBgn0034879	Rrp4	92	61.455	ENSMZEG00005018737	exosc2	93	60.364	Maylandia_zebra
FBgn0034879	Rrp4	89	62.879	ENSMGAG00000005450	EXOSC2	89	62.500	Meleagris_gallopavo
FBgn0034879	Rrp4	91	58.889	ENSMAUG00000008299	Exosc2	91	58.519	Mesocricetus_auratus
FBgn0034879	Rrp4	91	60.370	ENSMICG00000015495	EXOSC2	91	60.000	Microcebus_murinus
FBgn0034879	Rrp4	91	58.889	ENSMOCG00000008262	Exosc2	91	58.519	Microtus_ochrogaster
FBgn0034879	Rrp4	97	57.986	ENSMMOG00000009616	exosc2	94	57.639	Mola_mola
FBgn0034879	Rrp4	91	60.741	ENSMODG00000012114	EXOSC2	91	60.370	Monodelphis_domestica
FBgn0034879	Rrp4	97	58.681	ENSMALG00000022132	exosc2	94	57.639	Monopterus_albus
FBgn0034879	Rrp4	92	58.029	MGP_CAROLIEiJ_G0023415	Exosc2	93	57.664	Mus_caroli
FBgn0034879	Rrp4	92	58.029	ENSMUSG00000039356	Exosc2	93	57.664	Mus_musculus
FBgn0034879	Rrp4	92	58.029	MGP_PahariEiJ_G0024872	Exosc2	93	57.664	Mus_pahari
FBgn0034879	Rrp4	92	58.029	MGP_SPRETEiJ_G0024332	Exosc2	93	57.664	Mus_spretus
FBgn0034879	Rrp4	91	60.370	ENSMPUG00000012686	EXOSC2	89	61.832	Mustela_putorius_furo
FBgn0034879	Rrp4	91	59.559	ENSMLUG00000008776	EXOSC2	92	59.191	Myotis_lucifugus
FBgn0034879	Rrp4	91	59.259	ENSNGAG00000019383	Exosc2	91	58.519	Nannospalax_galili
FBgn0034879	Rrp4	92	60.727	ENSNBRG00000005453	exosc2	93	59.636	Neolamprologus_brichardi
FBgn0034879	Rrp4	89	61.132	ENSNLEG00000012533	EXOSC2	89	61.450	Nomascus_leucogenys
FBgn0034879	Rrp4	68	59.314	ENSMEUG00000000795	EXOSC2	65	60.847	Notamacropus_eugenii
FBgn0034879	Rrp4	91	57.407	ENSODEG00000016880	-	89	58.779	Octodon_degus
FBgn0034879	Rrp4	84	60.159	ENSODEG00000019513	-	98	59.761	Octodon_degus
FBgn0034879	Rrp4	92	60.727	ENSONIG00000014086	exosc2	93	59.636	Oreochromis_niloticus
FBgn0034879	Rrp4	97	59.107	ENSOANG00000001044	EXOSC2	98	58.763	Ornithorhynchus_anatinus
FBgn0034879	Rrp4	91	60.000	ENSOCUG00000007138	EXOSC2	89	61.450	Oryctolagus_cuniculus
FBgn0034879	Rrp4	97	59.516	ENSORLG00000007443	exosc2	98	58.478	Oryzias_latipes
FBgn0034879	Rrp4	97	59.516	ENSORLG00020018902	exosc2	98	58.478	Oryzias_latipes_hni
FBgn0034879	Rrp4	97	59.170	ENSORLG00015006767	exosc2	98	58.131	Oryzias_latipes_hsok
FBgn0034879	Rrp4	88	63.359	ENSOMEG00000003533	exosc2	89	62.214	Oryzias_melastigma
FBgn0034879	Rrp4	91	60.370	ENSOGAG00000007558	EXOSC2	91	60.000	Otolemur_garnettii
FBgn0034879	Rrp4	91	59.559	ENSOARG00000007438	EXOSC2	92	59.559	Ovis_aries
FBgn0034879	Rrp4	89	61.132	ENSPPAG00000034796	EXOSC2	89	61.450	Pan_paniscus
FBgn0034879	Rrp4	91	59.630	ENSPPRG00000001089	EXOSC2	89	61.450	Panthera_pardus
FBgn0034879	Rrp4	91	59.630	ENSPTIG00000021163	EXOSC2	89	61.450	Panthera_tigris_altaica
FBgn0034879	Rrp4	89	61.132	ENSPTRG00000045766	-	89	61.450	Pan_troglodytes
FBgn0034879	Rrp4	89	61.132	ENSPTRG00000021476	EXOSC2	89	61.450	Pan_troglodytes
FBgn0034879	Rrp4	89	60.755	ENSPANG00000025966	EXOSC2	89	61.069	Papio_anubis
FBgn0034879	Rrp4	88	63.740	ENSPKIG00000004271	exosc2	89	63.359	Paramormyrops_kingsleyae
FBgn0034879	Rrp4	93	60.714	ENSPSIG00000006743	EXOSC2	95	60.357	Pelodiscus_sinensis
FBgn0034879	Rrp4	86	61.569	ENSPMGG00000010980	exosc2	99	60.392	Periophthalmus_magnuspinnatus
FBgn0034879	Rrp4	91	59.259	ENSPEMG00000006345	Exosc2	91	58.889	Peromyscus_maniculatus_bairdii
FBgn0034879	Rrp4	88	62.977	ENSPMAG00000001280	exosc2	88	62.595	Petromyzon_marinus
FBgn0034879	Rrp4	91	60.370	ENSPCIG00000024122	EXOSC2	89	60.000	Phascolarctos_cinereus
FBgn0034879	Rrp4	97	58.966	ENSPFOG00000019819	exosc2	98	57.931	Poecilia_formosa
FBgn0034879	Rrp4	97	58.824	ENSPLAG00000004605	exosc2	98	57.785	Poecilia_latipinna
FBgn0034879	Rrp4	97	58.824	ENSPMEG00000010976	exosc2	98	57.785	Poecilia_mexicana
FBgn0034879	Rrp4	97	58.824	ENSPREG00000014306	exosc2	98	57.785	Poecilia_reticulata
FBgn0034879	Rrp4	89	61.132	ENSPPYG00000019695	EXOSC2	89	61.450	Pongo_abelii
FBgn0034879	Rrp4	91	60.000	ENSPCAG00000013400	EXOSC2	91	59.630	Procavia_capensis
FBgn0034879	Rrp4	91	60.370	ENSPCOG00000017639	EXOSC2	91	60.000	Propithecus_coquereli
FBgn0034879	Rrp4	91	59.259	ENSPVAG00000001513	EXOSC2	91	58.889	Pteropus_vampyrus
FBgn0034879	Rrp4	92	61.091	ENSPNYG00000007383	exosc2	93	60.000	Pundamilia_nyererei
FBgn0034879	Rrp4	92	62.044	ENSPNAG00000014281	exosc2	93	61.314	Pygocentrus_nattereri
FBgn0034879	Rrp4	91	59.630	ENSRNOG00000009245	Exosc2	91	59.259	Rattus_norvegicus
FBgn0034879	Rrp4	88	56.654	ENSRBIG00000029791	-	88	56.489	Rhinopithecus_bieti
FBgn0034879	Rrp4	89	60.755	ENSRBIG00000031203	-	89	61.069	Rhinopithecus_bieti
FBgn0034879	Rrp4	89	60.755	ENSRROG00000010827	-	89	61.069	Rhinopithecus_roxellana
FBgn0034879	Rrp4	91	54.444	ENSRROG00000043609	-	88	55.725	Rhinopithecus_roxellana
FBgn0034879	Rrp4	90	42.053	YHR069C	-	84	41.528	Saccharomyces_cerevisiae
FBgn0034879	Rrp4	89	60.755	ENSSBOG00000022712	EXOSC2	89	61.069	Saimiri_boliviensis_boliviensis
FBgn0034879	Rrp4	91	61.111	ENSSHAG00000016050	EXOSC2	91	60.741	Sarcophilus_harrisii
FBgn0034879	Rrp4	97	57.986	ENSSFOG00015011245	exosc2	98	57.292	Scleropages_formosus
FBgn0034879	Rrp4	88	62.595	ENSSMAG00000003112	exosc2	89	61.450	Scophthalmus_maximus
FBgn0034879	Rrp4	88	62.264	ENSSDUG00000004634	exosc2	89	61.132	Seriola_dumerili
FBgn0034879	Rrp4	88	62.977	ENSSLDG00000010616	exosc2	89	61.832	Seriola_lalandi_dorsalis
FBgn0034879	Rrp4	96	58.537	ENSSPUG00000013391	EXOSC2	91	60.073	Sphenodon_punctatus
FBgn0034879	Rrp4	97	59.028	ENSSPAG00000022947	exosc2	94	57.986	Stegastes_partitus
FBgn0034879	Rrp4	91	60.370	ENSSSCG00000005704	EXOSC2	91	60.000	Sus_scrofa
FBgn0034879	Rrp4	93	59.353	ENSTGUG00000004697	EXOSC2	94	59.353	Taeniopygia_guttata
FBgn0034879	Rrp4	88	57.414	ENSTRUG00000022436	exosc2	88	56.870	Takifugu_rubripes
FBgn0034879	Rrp4	91	54.613	ENSTTRG00000015159	EXOSC2	91	54.613	Tursiops_truncatus
FBgn0034879	Rrp4	84	62.800	ENSUAMG00000009651	EXOSC2	88	62.651	Ursus_americanus
FBgn0034879	Rrp4	91	60.000	ENSUMAG00000018726	EXOSC2	89	61.450	Ursus_maritimus
FBgn0034879	Rrp4	91	59.259	ENSVVUG00000027665	EXOSC2	89	60.687	Vulpes_vulpes
FBgn0034879	Rrp4	89	63.396	ENSXETG00000001340	exosc2	89	63.878	Xenopus_tropicalis
FBgn0034879	Rrp4	97	58.824	ENSXMAG00000005265	exosc2	98	57.785	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	IDA	Component
GO:0000176	nuclear exosome (RNase complex)	12490954.	ISS	Component
GO:0000177	cytoplasmic exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	12483225.	IMP	Component
GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005652	nuclear lamina	16407406.	IDA	Component
GO:0005737	cytoplasm	16407406.	IDA	Component
GO:0010468	regulation of gene expression	20185544.	IMP	Process
GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	21873635.	IBA	Process
GO:0034475	U4 snRNA 3'-end processing	21873635.	IBA	Process
GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	21873635.	IBA	Process
GO:0051607	defense response to virus	27474443.	IMP	Process
GO:0071034	CUT catabolic process	21873635.	IBA	Process
GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	21873635.	IBA	Process
GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process	21873635.	IBA	Process
GO:0071049	nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	21873635.	IBA	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	21873635.	IBA	Process