EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0034923 (Gene tree)
Gene ID: 37792
Gene Symbol: Upf3
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1922 bases
Position: chr2R:23893066-23894987
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072130	Smg4_UPF3	PF03467.15	7.6e-47	1	1
FBpp0309967	Smg4_UPF3	PF03467.15	7.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0343302	-	1671	-	FBpp0309967	492 (aa)	-	Q9W1H3
FBtr0072221	-	1809	-	FBpp0072130	492 (aa)	-	Q6NN82

Gene Model

Click here to download FBgn0034923's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0034923's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0034923	Upf3	53	32.143	ENSSDUG00000009680	upf3a	67	43.750	Seriola_dumerili

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	16177138.21317294.	IMP	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0035195	gene silencing by miRNA	16177138.	IMP	Process
GO:0045727	positive regulation of translation	21873635.	IBA	Process