EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035016 (Gene tree)
Gene ID: 37914
Gene Symbol: CG4612
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4216 bases
Position: chr2R:24521874-24526089
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072253	RRM_1	PF00076.22	1.9e-41	1	2
FBpp0072253	RRM_1	PF00076.22	1.9e-41	2	2
FBpp0297274	RRM_1	PF00076.22	1.9e-41	1	2
FBpp0297274	RRM_1	PF00076.22	1.9e-41	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0306137	-	3922	-	FBpp0297274	307 (aa)	-	Q9W158
FBtr0072346	-	2091	-	FBpp0072253	307 (aa)	-	Q9W158

Gene Model

Click here to download FBgn0035016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0035016	CG4612	58	40.299	FBgn0264001	bru3	58	40.299
FBgn0035016	CG4612	63	60.204	FBgn0265297	pAbp	61	60.309

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035016	CG4612	65	48.705	WBGene00003903	pab-2	54	48.947	Caenorhabditis_elegans
FBgn0035016	CG4612	64	52.830	ENSCING00000024279	-	93	52.866	Ciona_intestinalis
FBgn0035016	CG4612	73	44.615	YER165W	-	66	44.974	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0007616	long-term memory	26638074.	IMP	Process
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008143	poly(A) binding	10908584.	ISS	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0045727	positive regulation of translation	26638074.	IDA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component