EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035121 (Gene tree)
Gene ID: 38045
Gene Symbol: Tudor-SN
Alias: -
Full Name: Tudor staphylococcal nuclease
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5338 bases
Position: chr3L:259043-264380
Accession: FBgn0035121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072419	TUDOR	PF00567.24	2e-29	1	1
FBpp0304417	TUDOR	PF00567.24	2e-29	1	1
FBpp0072419	SNase	PF00565.17	3e-55	1	4
FBpp0072419	SNase	PF00565.17	3e-55	2	4
FBpp0072419	SNase	PF00565.17	3e-55	3	4
FBpp0072419	SNase	PF00565.17	3e-55	4	4
FBpp0304417	SNase	PF00565.17	3e-55	1	4
FBpp0304417	SNase	PF00565.17	3e-55	2	4
FBpp0304417	SNase	PF00565.17	3e-55	3	4
FBpp0304417	SNase	PF00565.17	3e-55	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072519	-	3159	-	FBpp0072419	926 (aa)	-	Q9W0S7
FBtr0332107	-	3411	-	FBpp0304417	926 (aa)	-	Q8T0F1

Gene Model

Click here to download FBgn0035121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035121's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035121	Tudor-SN	98	50.486	ENSG00000197157	SND1	100	59.603	Homo_sapiens
FBgn0035121	Tudor-SN	99	50.321	ENSAPOG00000017599	snd1	98	50.704	Acanthochromis_polyacanthus
FBgn0035121	Tudor-SN	99	50.318	ENSAMEG00000004664	SND1	93	50.811	Ailuropoda_melanoleuca
FBgn0035121	Tudor-SN	97	49.453	ENSACIG00000003551	snd1	98	49.296	Amphilophus_citrinellus
FBgn0035121	Tudor-SN	99	50.107	ENSAOCG00000014166	snd1	98	50.596	Amphiprion_ocellaris
FBgn0035121	Tudor-SN	99	50.107	ENSAPEG00000007067	snd1	98	50.596	Amphiprion_percula
FBgn0035121	Tudor-SN	98	49.457	ENSATEG00000018475	snd1	88	50.000	Anabas_testudineus
FBgn0035121	Tudor-SN	98	50.703	ENSANAG00000034463	SND1	98	50.714	Aotus_nancymaae
FBgn0035121	Tudor-SN	99	50.532	ENSACLG00000022897	snd1	99	50.862	Astatotilapia_calliptera
FBgn0035121	Tudor-SN	99	49.786	ENSAMXG00000016318	snd1	98	50.162	Astyanax_mexicanus
FBgn0035121	Tudor-SN	98	50.378	ENSBTAG00000010692	SND1	98	50.378	Bos_taurus
FBgn0035121	Tudor-SN	99	46.915	WBGene00006626	tsn-1	99	47.091	Caenorhabditis_elegans
FBgn0035121	Tudor-SN	98	50.486	ENSCJAG00000017668	SND1	98	50.494	Callithrix_jacchus
FBgn0035121	Tudor-SN	99	50.106	ENSCAFG00000001700	SND1	98	50.703	Canis_familiaris
FBgn0035121	Tudor-SN	99	50.106	ENSCAFG00020021639	SND1	98	50.703	Canis_lupus_dingo
FBgn0035121	Tudor-SN	98	50.595	ENSCHIG00000023390	SND1	98	50.604	Capra_hircus
FBgn0035121	Tudor-SN	70	52.667	ENSTSYG00000004979	SND1	98	52.667	Carlito_syrichta
FBgn0035121	Tudor-SN	97	44.967	ENSCAPG00000010677	SND1	97	44.967	Cavia_aperea
FBgn0035121	Tudor-SN	98	50.270	ENSCPOG00000006251	SND1	98	50.270	Cavia_porcellus
FBgn0035121	Tudor-SN	98	50.595	ENSCCAG00000036847	SND1	99	49.946	Cebus_capucinus
FBgn0035121	Tudor-SN	98	50.703	ENSCATG00000035214	SND1	99	50.714	Cercocebus_atys
FBgn0035121	Tudor-SN	97	51.204	ENSCLAG00000011796	SND1	94	54.040	Chinchilla_lanigera
FBgn0035121	Tudor-SN	98	50.703	ENSCSAG00000010182	SND1	98	50.703	Chlorocebus_sabaeus
FBgn0035121	Tudor-SN	77	44.660	ENSCHOG00000002218	SND1	86	44.660	Choloepus_hoffmanni
FBgn0035121	Tudor-SN	99	49.839	ENSCPBG00000018094	SND1	98	50.379	Chrysemys_picta_bellii
FBgn0035121	Tudor-SN	98	46.471	ENSCING00000000524	-	99	46.063	Ciona_intestinalis
FBgn0035121	Tudor-SN	99	46.932	ENSCSAVG00000008807	-	98	46.861	Ciona_savignyi
FBgn0035121	Tudor-SN	98	50.703	ENSCANG00000035119	SND1	98	50.703	Colobus_angolensis_palliatus
FBgn0035121	Tudor-SN	98	50.811	ENSCGRG00001022514	Snd1	96	53.731	Cricetulus_griseus_chok1gshd
FBgn0035121	Tudor-SN	97	50.768	ENSCGRG00000012277	Snd1	99	50.768	Cricetulus_griseus_crigri
FBgn0035121	Tudor-SN	99	50.374	ENSCSEG00000008661	snd1	97	51.094	Cynoglossus_semilaevis
FBgn0035121	Tudor-SN	99	50.161	ENSCVAG00000010316	snd1	99	50.280	Cyprinodon_variegatus
FBgn0035121	Tudor-SN	97	49.836	ENSDARG00000006766	snd1	98	52.050	Danio_rerio
FBgn0035121	Tudor-SN	97	49.454	ENSDNOG00000006795	SND1	99	49.454	Dasypus_novemcinctus
FBgn0035121	Tudor-SN	98	50.703	ENSDORG00000000336	Snd1	98	50.703	Dipodomys_ordii
FBgn0035121	Tudor-SN	86	41.140	ENSETEG00000000375	SND1	88	40.887	Echinops_telfairi
FBgn0035121	Tudor-SN	64	45.388	ENSEBUG00000014201	-	84	51.269	Eptatretus_burgeri
FBgn0035121	Tudor-SN	98	50.698	ENSEASG00005008513	SND1	98	50.591	Equus_asinus_asinus
FBgn0035121	Tudor-SN	98	51.243	ENSECAG00000011451	SND1	98	51.243	Equus_caballus
FBgn0035121	Tudor-SN	98	52.833	ENSEEUG00000014737	SND1	91	52.833	Erinaceus_europaeus
FBgn0035121	Tudor-SN	99	48.936	ENSELUG00000001805	snd1	95	49.299	Esox_lucius
FBgn0035121	Tudor-SN	99	50.212	ENSFCAG00000008289	SND1	98	50.703	Felis_catus
FBgn0035121	Tudor-SN	97	50.656	ENSFDAG00000015881	SND1	98	50.378	Fukomys_damarensis
FBgn0035121	Tudor-SN	99	49.003	ENSFHEG00000004093	snd1	98	50.393	Fundulus_heteroclitus
FBgn0035121	Tudor-SN	57	67.742	ENSGMOG00000018932	snd1	57	67.742	Gadus_morhua
FBgn0035121	Tudor-SN	99	49.946	ENSGAFG00000008421	snd1	99	50.385	Gambusia_affinis
FBgn0035121	Tudor-SN	99	34.322	ENSGACG00000019793	snd1	98	34.439	Gasterosteus_aculeatus
FBgn0035121	Tudor-SN	98	50.703	ENSGGOG00000009614	SND1	99	50.271	Gorilla_gorilla
FBgn0035121	Tudor-SN	99	50.589	ENSHBUG00000019135	snd1	98	51.094	Haplochromis_burtoni
FBgn0035121	Tudor-SN	98	50.488	ENSHGLG00000003618	SND1	98	50.378	Heterocephalus_glaber_female
FBgn0035121	Tudor-SN	99	50.215	ENSHGLG00100012449	SND1	99	50.488	Heterocephalus_glaber_male
FBgn0035121	Tudor-SN	99	49.893	ENSHCOG00000005266	snd1	98	50.217	Hippocampus_comes
FBgn0035121	Tudor-SN	99	50.427	ENSIPUG00000013279	snd1	97	50.873	Ictalurus_punctatus
FBgn0035121	Tudor-SN	98	50.813	ENSSTOG00000002140	SND1	98	50.703	Ictidomys_tridecemlineatus
FBgn0035121	Tudor-SN	98	50.811	ENSJJAG00000009561	Snd1	98	50.703	Jaculus_jaculus
FBgn0035121	Tudor-SN	98	50.054	ENSKMAG00000016997	snd1	98	50.163	Kryptolebias_marmoratus
FBgn0035121	Tudor-SN	99	51.466	ENSLBEG00000013563	snd1	98	49.404	Labrus_bergylta
FBgn0035121	Tudor-SN	97	49.891	ENSLOCG00000015537	snd1	98	49.784	Lepisosteus_oculatus
FBgn0035121	Tudor-SN	99	50.000	ENSLAFG00000009696	SND1	98	50.486	Loxodonta_africana
FBgn0035121	Tudor-SN	98	50.703	ENSMFAG00000038114	SND1	99	50.714	Macaca_fascicularis
FBgn0035121	Tudor-SN	98	50.703	ENSMMUG00000015432	SND1	98	50.703	Macaca_mulatta
FBgn0035121	Tudor-SN	98	50.703	ENSMNEG00000039808	SND1	97	53.754	Macaca_nemestrina
FBgn0035121	Tudor-SN	98	50.703	ENSMLEG00000029040	SND1	97	53.754	Mandrillus_leucophaeus
FBgn0035121	Tudor-SN	99	50.536	ENSMAMG00000011739	snd1	98	50.868	Mastacembelus_armatus
FBgn0035121	Tudor-SN	99	50.532	ENSMZEG00005005681	snd1	99	50.862	Maylandia_zebra
FBgn0035121	Tudor-SN	98	50.704	ENSMICG00000000097	SND1	98	50.595	Microcebus_murinus
FBgn0035121	Tudor-SN	98	50.378	ENSMOCG00000005040	Snd1	98	50.378	Microtus_ochrogaster
FBgn0035121	Tudor-SN	99	49.358	ENSMMOG00000001795	snd1	98	49.837	Mola_mola
FBgn0035121	Tudor-SN	98	50.163	ENSMODG00000015182	SND1	98	50.054	Monodelphis_domestica
FBgn0035121	Tudor-SN	98	51.246	ENSMALG00000012071	snd1	98	51.246	Monopterus_albus
FBgn0035121	Tudor-SN	97	50.656	MGP_CAROLIEiJ_G0028159	Snd1	96	53.322	Mus_caroli
FBgn0035121	Tudor-SN	97	50.546	ENSMUSG00000001424	Snd1	96	53.234	Mus_musculus
FBgn0035121	Tudor-SN	97	50.656	MGP_PahariEiJ_G0021917	Snd1	97	53.322	Mus_pahari
FBgn0035121	Tudor-SN	97	50.656	MGP_SPRETEiJ_G0029159	Snd1	96	53.234	Mus_spretus
FBgn0035121	Tudor-SN	99	50.106	ENSMPUG00000006545	SND1	98	50.595	Mustela_putorius_furo
FBgn0035121	Tudor-SN	97	50.710	ENSMLUG00000017130	SND1	99	50.654	Myotis_lucifugus
FBgn0035121	Tudor-SN	98	50.704	ENSNGAG00000011186	Snd1	98	50.595	Nannospalax_galili
FBgn0035121	Tudor-SN	99	50.638	ENSNBRG00000006681	snd1	99	50.970	Neolamprologus_brichardi
FBgn0035121	Tudor-SN	99	50.212	ENSNLEG00000012263	SND1	99	50.714	Nomascus_leucogenys
FBgn0035121	Tudor-SN	87	48.662	ENSOPRG00000013405	SND1	87	48.180	Ochotona_princeps
FBgn0035121	Tudor-SN	97	51.092	ENSODEG00000011502	SND1	97	51.092	Octodon_degus
FBgn0035121	Tudor-SN	99	50.851	ENSONIG00000011481	snd1	96	51.185	Oreochromis_niloticus
FBgn0035121	Tudor-SN	97	50.710	ENSOANG00000000817	SND1	98	50.595	Ornithorhynchus_anatinus
FBgn0035121	Tudor-SN	99	50.637	ENSOCUG00000001620	SND1	98	51.135	Oryctolagus_cuniculus
FBgn0035121	Tudor-SN	97	49.563	ENSORLG00000015201	snd1	98	49.404	Oryzias_latipes
FBgn0035121	Tudor-SN	97	49.782	ENSORLG00020013991	snd1	98	49.512	Oryzias_latipes_hni
FBgn0035121	Tudor-SN	97	49.672	ENSORLG00015012436	snd1	98	49.512	Oryzias_latipes_hsok
FBgn0035121	Tudor-SN	99	49.679	ENSOMEG00000006406	snd1	97	50.219	Oryzias_melastigma
FBgn0035121	Tudor-SN	98	50.919	ENSOGAG00000013356	SND1	93	50.811	Otolemur_garnettii
FBgn0035121	Tudor-SN	97	48.955	ENSOARG00000002149	SND1	99	48.955	Ovis_aries
FBgn0035121	Tudor-SN	98	50.595	ENSPPAG00000042947	SND1	98	50.604	Pan_paniscus
FBgn0035121	Tudor-SN	99	50.212	ENSPPRG00000004494	SND1	98	50.703	Panthera_pardus
FBgn0035121	Tudor-SN	99	50.106	ENSPTIG00000014214	SND1	98	50.595	Panthera_tigris_altaica
FBgn0035121	Tudor-SN	98	50.595	ENSPTRG00000023911	SND1	98	50.604	Pan_troglodytes
FBgn0035121	Tudor-SN	97	50.714	ENSPANG00000011997	SND1	99	50.714	Papio_anubis
FBgn0035121	Tudor-SN	97	49.565	ENSPKIG00000023494	snd1	97	49.564	Paramormyrops_kingsleyae
FBgn0035121	Tudor-SN	92	51.220	ENSPMGG00000003629	snd1	99	51.103	Periophthalmus_magnuspinnatus
FBgn0035121	Tudor-SN	98	50.486	ENSPEMG00000010240	Snd1	98	50.486	Peromyscus_maniculatus_bairdii
FBgn0035121	Tudor-SN	97	48.959	ENSPMAG00000007915	-	99	48.959	Petromyzon_marinus
FBgn0035121	Tudor-SN	98	50.054	ENSPCIG00000011561	SND1	98	49.946	Phascolarctos_cinereus
FBgn0035121	Tudor-SN	99	49.732	ENSPFOG00000001557	snd1	98	50.271	Poecilia_formosa
FBgn0035121	Tudor-SN	99	49.467	ENSPLAG00000018459	snd1	96	50.271	Poecilia_latipinna
FBgn0035121	Tudor-SN	99	49.625	ENSPMEG00000006803	snd1	98	50.163	Poecilia_mexicana
FBgn0035121	Tudor-SN	99	49.625	ENSPREG00000002189	snd1	98	50.054	Poecilia_reticulata
FBgn0035121	Tudor-SN	87	52.311	ENSPPYG00000017972	SND1	94	52.184	Pongo_abelii
FBgn0035121	Tudor-SN	98	44.962	ENSPCAG00000011305	SND1	98	45.070	Procavia_capensis
FBgn0035121	Tudor-SN	99	49.893	ENSPCOG00000026791	SND1	99	50.714	Propithecus_coquereli
FBgn0035121	Tudor-SN	98	50.054	ENSPVAG00000013945	SND1	98	49.946	Pteropus_vampyrus
FBgn0035121	Tudor-SN	99	50.532	ENSPNYG00000000932	snd1	99	50.862	Pundamilia_nyererei
FBgn0035121	Tudor-SN	99	50.536	ENSPNAG00000001206	snd1	98	50.595	Pygocentrus_nattereri
FBgn0035121	Tudor-SN	97	50.766	ENSRNOG00000031173	Snd1	99	49.945	Rattus_norvegicus
FBgn0035121	Tudor-SN	70	53.636	ENSRBIG00000027782	-	93	53.493	Rhinopithecus_bieti
FBgn0035121	Tudor-SN	98	50.703	ENSRROG00000033020	SND1	98	50.703	Rhinopithecus_roxellana
FBgn0035121	Tudor-SN	98	50.704	ENSSBOG00000032461	SND1	98	50.604	Saimiri_boliviensis_boliviensis
FBgn0035121	Tudor-SN	97	48.959	ENSSHAG00000015359	SND1	99	48.959	Sarcophilus_harrisii
FBgn0035121	Tudor-SN	97	50.763	ENSSFOG00015001103	snd1	98	50.593	Scleropages_formosus
FBgn0035121	Tudor-SN	97	49.781	ENSSMAG00000001932	snd1	92	49.781	Scophthalmus_maximus
FBgn0035121	Tudor-SN	99	50.000	ENSSDUG00000002699	snd1	92	50.271	Seriola_dumerili
FBgn0035121	Tudor-SN	99	46.030	ENSSLDG00000001950	snd1	98	46.371	Seriola_lalandi_dorsalis
FBgn0035121	Tudor-SN	86	49.290	ENSSARG00000004877	SND1	92	49.290	Sorex_araneus
FBgn0035121	Tudor-SN	73	50.250	ENSSPUG00000017586	SND1	96	50.250	Sphenodon_punctatus
FBgn0035121	Tudor-SN	72	52.117	ENSSPAG00000021398	snd1	97	52.588	Stegastes_partitus
FBgn0035121	Tudor-SN	98	50.704	ENSSSCG00000016590	SND1	98	50.595	Sus_scrofa
FBgn0035121	Tudor-SN	99	49.571	ENSTRUG00000014067	snd1	98	50.054	Takifugu_rubripes
FBgn0035121	Tudor-SN	99	49.522	ENSTNIG00000011019	snd1	96	53.910	Tetraodon_nigroviridis
FBgn0035121	Tudor-SN	93	47.440	ENSTBEG00000003999	SND1	100	47.440	Tupaia_belangeri
FBgn0035121	Tudor-SN	98	48.160	ENSTTRG00000006059	SND1	98	48.160	Tursiops_truncatus
FBgn0035121	Tudor-SN	86	50.936	ENSUAMG00000005604	-	92	50.746	Ursus_americanus
FBgn0035121	Tudor-SN	68	46.494	ENSUAMG00000002820	-	85	47.554	Ursus_americanus
FBgn0035121	Tudor-SN	99	50.212	ENSUMAG00000005960	SND1	98	50.703	Ursus_maritimus
FBgn0035121	Tudor-SN	72	52.459	ENSVPAG00000008302	SND1	70	52.459	Vicugna_pacos
FBgn0035121	Tudor-SN	99	50.000	ENSVVUG00000007226	SND1	98	50.595	Vulpes_vulpes
FBgn0035121	Tudor-SN	96	48.837	ENSXETG00000023043	snd1	100	49.391	Xenopus_tropicalis
FBgn0035121	Tudor-SN	91	48.953	ENSXCOG00000013629	snd1	98	49.070	Xiphophorus_couchianus
FBgn0035121	Tudor-SN	99	49.946	ENSXMAG00000011469	snd1	98	50.379	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004518	nuclease activity	21873635.	IBA	Function
GO:0004518	nuclease activity	14508492.	IDA	Function
GO:0005515	protein binding	14508492.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	26808625.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	26808625.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0007283	spermatogenesis	26808625.	IMP	Process
GO:0010529	negative regulation of transposition	26808625.	IGI	Process
GO:0016442	RISC complex	14508492.	IDA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process