EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035162 (Gene tree)
Gene ID: 38093
Gene Symbol: Sf3b3
Alias: -
Full Name: Splicing factor 3b subunit 3
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 6666 bases
Position: chr3L:826720-833385
Accession: FBgn0035162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072494	CPSF_A	PF03178.15	9.4e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072597	-	4222	-	FBpp0072494	1227 (aa)	-	Q5BI86
FBtr0331404	-	4329	-	FBpp0303821	469 (aa)	-	M9PDJ8

Gene Model

Click here to download FBgn0035162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035162's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035162	Sf3b3	100	75.143	ENSG00000189091	SF3B3	100	96.774	Homo_sapiens
FBgn0035162	Sf3b3	96	74.874	ENSAPOG00000006172	sf3b3	98	74.874	Acanthochromis_polyacanthus
FBgn0035162	Sf3b3	100	75.041	ENSAMEG00000002187	SF3B3	100	75.041	Ailuropoda_melanoleuca
FBgn0035162	Sf3b3	92	72.173	ENSACIG00000016487	sf3b3	99	72.173	Amphilophus_citrinellus
FBgn0035162	Sf3b3	100	74.654	ENSAOCG00000007158	sf3b3	100	74.654	Amphiprion_ocellaris
FBgn0035162	Sf3b3	100	74.654	ENSAPEG00000022786	sf3b3	100	74.654	Amphiprion_percula
FBgn0035162	Sf3b3	100	75.041	ENSATEG00000013708	sf3b3	100	75.041	Anabas_testudineus
FBgn0035162	Sf3b3	81	75.855	ENSAPLG00000004996	SF3B3	99	75.855	Anas_platyrhynchos
FBgn0035162	Sf3b3	100	75.061	ENSACAG00000001817	SF3B3	100	75.061	Anolis_carolinensis
FBgn0035162	Sf3b3	100	75.143	ENSANAG00000028001	SF3B3	100	75.143	Aotus_nancymaae
FBgn0035162	Sf3b3	96	75.507	ENSACLG00000022555	sf3b3	98	75.507	Astatotilapia_calliptera
FBgn0035162	Sf3b3	100	75.041	ENSAMXG00000003410	sf3b3	100	75.041	Astyanax_mexicanus
FBgn0035162	Sf3b3	100	75.143	ENSBTAG00000010627	SF3B3	100	75.143	Bos_taurus
FBgn0035162	Sf3b3	100	57.154	WBGene00019323	teg-4	100	57.154	Caenorhabditis_elegans
FBgn0035162	Sf3b3	100	75.143	ENSCJAG00000014773	SF3B3	99	75.143	Callithrix_jacchus
FBgn0035162	Sf3b3	100	75.224	ENSCAFG00000020151	SF3B3	100	75.224	Canis_familiaris
FBgn0035162	Sf3b3	100	75.224	ENSCAFG00020020912	SF3B3	100	75.224	Canis_lupus_dingo
FBgn0035162	Sf3b3	100	75.224	ENSCHIG00000019822	SF3B3	100	75.224	Capra_hircus
FBgn0035162	Sf3b3	100	75.143	ENSTSYG00000007910	SF3B3	100	75.143	Carlito_syrichta
FBgn0035162	Sf3b3	84	65.818	ENSCAPG00000001484	SF3B3	92	65.818	Cavia_aperea
FBgn0035162	Sf3b3	100	74.165	ENSCPOG00000000586	SF3B3	100	74.165	Cavia_porcellus
FBgn0035162	Sf3b3	100	75.143	ENSCCAG00000017736	SF3B3	100	75.143	Cebus_capucinus
FBgn0035162	Sf3b3	100	75.143	ENSCATG00000036562	SF3B3	100	75.143	Cercocebus_atys
FBgn0035162	Sf3b3	100	75.143	ENSCLAG00000003921	SF3B3	100	75.143	Chinchilla_lanigera
FBgn0035162	Sf3b3	100	75.143	ENSCSAG00000004371	SF3B3	100	75.143	Chlorocebus_sabaeus
FBgn0035162	Sf3b3	85	78.193	ENSCHOG00000001878	SF3B3	86	78.193	Choloepus_hoffmanni
FBgn0035162	Sf3b3	100	75.143	ENSCPBG00000015853	SF3B3	100	75.143	Chrysemys_picta_bellii
FBgn0035162	Sf3b3	100	71.906	ENSCING00000001342	-	100	71.906	Ciona_intestinalis
FBgn0035162	Sf3b3	99	72.801	ENSCSAVG00000011454	-	100	71.417	Ciona_savignyi
FBgn0035162	Sf3b3	100	72.942	ENSCANG00000042920	SF3B3	100	73.024	Colobus_angolensis_palliatus
FBgn0035162	Sf3b3	100	75.061	ENSCGRG00001015908	Sf3b3	100	75.061	Cricetulus_griseus_chok1gshd
FBgn0035162	Sf3b3	100	75.061	ENSCGRG00000010180	Sf3b3	100	75.061	Cricetulus_griseus_crigri
FBgn0035162	Sf3b3	81	75.827	ENSCSEG00000014192	sf3b3	98	75.827	Cynoglossus_semilaevis
FBgn0035162	Sf3b3	100	74.898	ENSCVAG00000010459	sf3b3	100	74.898	Cyprinodon_variegatus
FBgn0035162	Sf3b3	100	74.553	ENSDARG00000103553	sf3b3	100	74.553	Danio_rerio
FBgn0035162	Sf3b3	85	74.212	ENSDNOG00000043626	SF3B3	100	74.212	Dasypus_novemcinctus
FBgn0035162	Sf3b3	100	75.143	ENSDORG00000014176	Sf3b3	100	75.143	Dipodomys_ordii
FBgn0035162	Sf3b3	84	87.634	ENSETEG00000002729	SF3B3	84	87.634	Echinops_telfairi
FBgn0035162	Sf3b3	100	71.720	ENSEBUG00000006117	sf3b3	100	71.720	Eptatretus_burgeri
FBgn0035162	Sf3b3	100	75.224	ENSEASG00005013376	SF3B3	100	75.224	Equus_asinus_asinus
FBgn0035162	Sf3b3	100	75.224	ENSECAG00000014053	SF3B3	100	75.224	Equus_caballus
FBgn0035162	Sf3b3	92	82.807	ENSEEUG00000015611	SF3B3	93	82.807	Erinaceus_europaeus
FBgn0035162	Sf3b3	100	73.236	ENSELUG00000015417	sf3b3	100	73.236	Esox_lucius
FBgn0035162	Sf3b3	100	75.224	ENSFCAG00000009487	SF3B3	100	75.224	Felis_catus
FBgn0035162	Sf3b3	100	75.224	ENSFALG00000007372	SF3B3	100	75.224	Ficedula_albicollis
FBgn0035162	Sf3b3	100	75.143	ENSFDAG00000002608	SF3B3	100	75.143	Fukomys_damarensis
FBgn0035162	Sf3b3	100	74.797	ENSFHEG00000017824	sf3b3	100	74.797	Fundulus_heteroclitus
FBgn0035162	Sf3b3	100	71.405	ENSGMOG00000008139	sf3b3	100	71.405	Gadus_morhua
FBgn0035162	Sf3b3	100	75.387	ENSGALG00000002531	SF3B3	100	75.387	Gallus_gallus
FBgn0035162	Sf3b3	100	74.797	ENSGAFG00000015206	sf3b3	100	74.797	Gambusia_affinis
FBgn0035162	Sf3b3	100	74.655	ENSGACG00000002646	sf3b3	100	74.655	Gasterosteus_aculeatus
FBgn0035162	Sf3b3	96	75.614	ENSGAGG00000006746	SF3B3	97	75.614	Gopherus_agassizii
FBgn0035162	Sf3b3	100	75.143	ENSGGOG00000003246	SF3B3	100	75.143	Gorilla_gorilla
FBgn0035162	Sf3b3	92	68.375	ENSHBUG00000005960	sf3b3	99	69.258	Haplochromis_burtoni
FBgn0035162	Sf3b3	100	75.143	ENSHGLG00000010135	SF3B3	100	75.143	Heterocephalus_glaber_female
FBgn0035162	Sf3b3	100	73.532	ENSHGLG00100011148	SF3B3	100	73.532	Heterocephalus_glaber_male
FBgn0035162	Sf3b3	100	74.959	ENSHCOG00000011981	sf3b3	100	74.959	Hippocampus_comes
FBgn0035162	Sf3b3	100	74.878	ENSIPUG00000020435	sf3b3	100	74.878	Ictalurus_punctatus
FBgn0035162	Sf3b3	100	75.143	ENSSTOG00000007065	SF3B3	100	75.143	Ictidomys_tridecemlineatus
FBgn0035162	Sf3b3	100	75.143	ENSJJAG00000003948	Sf3b3	100	75.143	Jaculus_jaculus
FBgn0035162	Sf3b3	100	72.794	ENSKMAG00000004066	sf3b3	99	75.000	Kryptolebias_marmoratus
FBgn0035162	Sf3b3	100	74.472	ENSLBEG00000018302	sf3b3	100	74.472	Labrus_bergylta
FBgn0035162	Sf3b3	98	72.570	ENSLACG00000012501	SF3B3	99	72.570	Latimeria_chalumnae
FBgn0035162	Sf3b3	100	75.326	ENSLOCG00000007566	sf3b3	100	75.326	Lepisosteus_oculatus
FBgn0035162	Sf3b3	100	75.224	ENSLAFG00000012219	SF3B3	100	75.224	Loxodonta_africana
FBgn0035162	Sf3b3	100	75.143	ENSMFAG00000045487	SF3B3	100	75.143	Macaca_fascicularis
FBgn0035162	Sf3b3	100	75.143	ENSMMUG00000017812	SF3B3	100	75.143	Macaca_mulatta
FBgn0035162	Sf3b3	100	75.143	ENSMNEG00000033385	SF3B3	100	75.143	Macaca_nemestrina
FBgn0035162	Sf3b3	100	72.209	ENSMLEG00000043891	SF3B3	100	72.209	Mandrillus_leucophaeus
FBgn0035162	Sf3b3	100	74.735	ENSMAMG00000016837	sf3b3	100	74.735	Mastacembelus_armatus
FBgn0035162	Sf3b3	100	75.122	ENSMZEG00005010836	sf3b3	100	75.122	Maylandia_zebra
FBgn0035162	Sf3b3	89	72.121	ENSMZEG00005026015	sf3b3	99	72.121	Maylandia_zebra
FBgn0035162	Sf3b3	100	75.387	ENSMGAG00000001597	SF3B3	100	75.387	Meleagris_gallopavo
FBgn0035162	Sf3b3	81	64.524	ENSMAUG00000013618	Sf3b3	95	65.142	Mesocricetus_auratus
FBgn0035162	Sf3b3	100	74.125	ENSMICG00000001363	SF3B3	100	74.125	Microcebus_murinus
FBgn0035162	Sf3b3	100	75.061	ENSMOCG00000006108	Sf3b3	100	75.061	Microtus_ochrogaster
FBgn0035162	Sf3b3	89	71.755	ENSMMOG00000002598	sf3b3	97	71.755	Mola_mola
FBgn0035162	Sf3b3	100	71.498	ENSMODG00000014363	SF3B3	100	71.498	Monodelphis_domestica
FBgn0035162	Sf3b3	100	74.735	ENSMALG00000008014	sf3b3	100	74.735	Monopterus_albus
FBgn0035162	Sf3b3	100	74.980	MGP_CAROLIEiJ_G0031563	Sf3b3	100	74.980	Mus_caroli
FBgn0035162	Sf3b3	100	75.061	ENSMUSG00000033732	Sf3b3	100	75.061	Mus_musculus
FBgn0035162	Sf3b3	100	75.061	MGP_SPRETEiJ_G0032681	Sf3b3	100	75.061	Mus_spretus
FBgn0035162	Sf3b3	100	75.224	ENSMPUG00000010277	SF3B3	100	75.224	Mustela_putorius_furo
FBgn0035162	Sf3b3	100	74.980	ENSMLUG00000014607	SF3B3	100	74.980	Myotis_lucifugus
FBgn0035162	Sf3b3	100	75.143	ENSNGAG00000021903	Sf3b3	100	75.143	Nannospalax_galili
FBgn0035162	Sf3b3	84	82.857	ENSNBRG00000007197	sf3b3	99	82.857	Neolamprologus_brichardi
FBgn0035162	Sf3b3	100	74.186	ENSNLEG00000016127	SF3B3	100	74.186	Nomascus_leucogenys
FBgn0035162	Sf3b3	93	74.834	ENSMEUG00000004479	SF3B3	94	74.834	Notamacropus_eugenii
FBgn0035162	Sf3b3	98	72.379	ENSOPRG00000009847	SF3B3	99	72.379	Ochotona_princeps
FBgn0035162	Sf3b3	100	75.143	ENSODEG00000014154	SF3B3	100	75.143	Octodon_degus
FBgn0035162	Sf3b3	100	75.203	ENSONIG00000011198	sf3b3	100	75.203	Oreochromis_niloticus
FBgn0035162	Sf3b3	100	75.061	ENSOANG00000001161	-	100	75.061	Ornithorhynchus_anatinus
FBgn0035162	Sf3b3	100	73.431	ENSOCUG00000004139	SF3B3	100	73.431	Oryctolagus_cuniculus
FBgn0035162	Sf3b3	100	74.735	ENSORLG00000013472	sf3b3	100	74.735	Oryzias_latipes
FBgn0035162	Sf3b3	100	74.735	ENSORLG00020017473	sf3b3	100	74.735	Oryzias_latipes_hni
FBgn0035162	Sf3b3	100	74.654	ENSORLG00015007710	sf3b3	100	74.654	Oryzias_latipes_hsok
FBgn0035162	Sf3b3	100	74.878	ENSOMEG00000014483	sf3b3	100	74.878	Oryzias_melastigma
FBgn0035162	Sf3b3	100	74.959	ENSOGAG00000016051	SF3B3	100	74.959	Otolemur_garnettii
FBgn0035162	Sf3b3	100	75.041	ENSOARG00000004816	SF3B3	100	75.041	Ovis_aries
FBgn0035162	Sf3b3	100	75.143	ENSPPAG00000026807	SF3B3	100	75.143	Pan_paniscus
FBgn0035162	Sf3b3	100	75.224	ENSPPRG00000001686	SF3B3	100	75.224	Panthera_pardus
FBgn0035162	Sf3b3	89	72.379	ENSPTIG00000020382	SF3B3	100	72.379	Panthera_tigris_altaica
FBgn0035162	Sf3b3	100	75.143	ENSPTRG00000008308	SF3B3	100	75.143	Pan_troglodytes
FBgn0035162	Sf3b3	100	75.143	ENSPANG00000024075	SF3B3	100	75.143	Papio_anubis
FBgn0035162	Sf3b3	100	74.735	ENSPKIG00000002712	sf3b3	100	74.735	Paramormyrops_kingsleyae
FBgn0035162	Sf3b3	89	74.385	ENSPSIG00000002232	SF3B3	100	74.385	Pelodiscus_sinensis
FBgn0035162	Sf3b3	100	75.061	ENSPEMG00000008603	Sf3b3	100	75.061	Peromyscus_maniculatus_bairdii
FBgn0035162	Sf3b3	100	74.817	ENSPMAG00000001793	sf3b3	100	74.817	Petromyzon_marinus
FBgn0035162	Sf3b3	100	75.061	ENSPCIG00000014927	SF3B3	100	75.061	Phascolarctos_cinereus
FBgn0035162	Sf3b3	100	75.041	ENSPFOG00000015516	sf3b3	100	75.041	Poecilia_formosa
FBgn0035162	Sf3b3	100	75.041	ENSPLAG00000014330	sf3b3	100	75.041	Poecilia_latipinna
FBgn0035162	Sf3b3	100	74.959	ENSPMEG00000019856	sf3b3	100	74.959	Poecilia_mexicana
FBgn0035162	Sf3b3	81	76.128	ENSPREG00000019669	sf3b3	97	76.128	Poecilia_reticulata
FBgn0035162	Sf3b3	100	70.416	ENSPPYG00000007539	SF3B3	100	70.416	Pongo_abelii
FBgn0035162	Sf3b3	100	58.028	ENSPCAG00000002623	SF3B3	100	58.028	Procavia_capensis
FBgn0035162	Sf3b3	85	89.720	ENSPCOG00000026582	SF3B3	100	89.720	Propithecus_coquereli
FBgn0035162	Sf3b3	100	75.224	ENSPVAG00000000684	SF3B3	100	75.224	Pteropus_vampyrus
FBgn0035162	Sf3b3	100	75.203	ENSPNYG00000003528	sf3b3	100	75.203	Pundamilia_nyererei
FBgn0035162	Sf3b3	100	74.878	ENSPNAG00000015419	sf3b3	100	74.878	Pygocentrus_nattereri
FBgn0035162	Sf3b3	100	75.061	ENSRNOG00000017724	Sf3b3	100	75.061	Rattus_norvegicus
FBgn0035162	Sf3b3	100	75.143	ENSRBIG00000021904	SF3B3	100	75.143	Rhinopithecus_bieti
FBgn0035162	Sf3b3	100	75.143	ENSRROG00000045703	SF3B3	100	75.143	Rhinopithecus_roxellana
FBgn0035162	Sf3b3	100	75.143	ENSSBOG00000029156	SF3B3	100	75.143	Saimiri_boliviensis_boliviensis
FBgn0035162	Sf3b3	100	75.061	ENSSHAG00000000372	SF3B3	100	75.061	Sarcophilus_harrisii
FBgn0035162	Sf3b3	100	75.143	ENSSFOG00015012877	sf3b3	100	75.143	Scleropages_formosus
FBgn0035162	Sf3b3	100	74.390	ENSSMAG00000014386	sf3b3	100	74.390	Scophthalmus_maximus
FBgn0035162	Sf3b3	100	74.797	ENSSDUG00000021201	sf3b3	100	74.797	Seriola_dumerili
FBgn0035162	Sf3b3	100	74.797	ENSSLDG00000017532	sf3b3	100	74.797	Seriola_lalandi_dorsalis
FBgn0035162	Sf3b3	93	75.956	ENSSARG00000006917	SF3B3	93	75.956	Sorex_araneus
FBgn0035162	Sf3b3	100	75.224	ENSSPUG00000006253	SF3B3	100	75.224	Sphenodon_punctatus
FBgn0035162	Sf3b3	100	69.356	ENSSPAG00000003125	sf3b3	100	69.356	Stegastes_partitus
FBgn0035162	Sf3b3	100	75.224	ENSSSCG00000025323	SF3B3	100	75.224	Sus_scrofa
FBgn0035162	Sf3b3	100	75.407	ENSTGUG00000006082	SF3B3	100	75.407	Taeniopygia_guttata
FBgn0035162	Sf3b3	89	75.501	ENSTNIG00000004857	sf3b3	100	75.501	Tetraodon_nigroviridis
FBgn0035162	Sf3b3	93	63.525	ENSTBEG00000002946	SF3B3	100	63.525	Tupaia_belangeri
FBgn0035162	Sf3b3	100	74.572	ENSTTRG00000005855	SF3B3	100	74.572	Tursiops_truncatus
FBgn0035162	Sf3b3	100	75.224	ENSUAMG00000006780	SF3B3	100	75.224	Ursus_americanus
FBgn0035162	Sf3b3	100	75.224	ENSUMAG00000017757	SF3B3	100	75.224	Ursus_maritimus
FBgn0035162	Sf3b3	100	63.325	ENSVPAG00000003202	SF3B3	100	63.325	Vicugna_pacos
FBgn0035162	Sf3b3	100	75.224	ENSVVUG00000017922	SF3B3	100	75.224	Vulpes_vulpes
FBgn0035162	Sf3b3	100	74.654	ENSXETG00000032869	SF3B3	100	74.654	Xenopus_tropicalis
FBgn0035162	Sf3b3	78	76.514	ENSXCOG00000013628	sf3b3	97	76.514	Xiphophorus_couchianus
FBgn0035162	Sf3b3	100	74.797	ENSXMAG00000006334	sf3b3	99	76.128	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000124	SAGA complex	27185460.	IDA	Component
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005686	U2 snRNP	27185460.	IDA	Component
GO:0005686	U2 snRNP	10908584.	ISS	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component