EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035271 (Gene tree)
Gene ID: 38229
Gene Symbol: CG2021
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 402 bases
Position: chr3L:1777010-1777411
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072674	LSM	PF01423.22	7.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072791	-	402	-	FBpp0072674	95 (aa)	-	Q9W087

Gene Model

Click here to download FBgn0035271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0035271	CG2021	82	30.769	FBgn0261067	LSm1	56	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035271	CG2021	99	69.149	ENSG00000128534	LSM8	97	71.233	Homo_sapiens
FBgn0035271	CG2021	99	70.213	ENSAPOG00000008649	lsm8	98	70.213	Acanthochromis_polyacanthus
FBgn0035271	CG2021	99	69.149	ENSAMEG00000001162	LSM8	98	69.149	Ailuropoda_melanoleuca
FBgn0035271	CG2021	77	72.603	ENSACIG00000014694	lsm8	97	72.603	Amphilophus_citrinellus
FBgn0035271	CG2021	99	70.213	ENSAOCG00000013926	lsm8	98	70.213	Amphiprion_ocellaris
FBgn0035271	CG2021	99	70.213	ENSAPEG00000023502	lsm8	98	70.213	Amphiprion_percula
FBgn0035271	CG2021	77	72.603	ENSATEG00000023432	lsm8	97	72.603	Anabas_testudineus
FBgn0035271	CG2021	96	65.957	ENSAPLG00000005115	LSM8	95	65.957	Anas_platyrhynchos
FBgn0035271	CG2021	99	69.149	ENSANAG00000027771	LSM8	100	71.622	Aotus_nancymaae
FBgn0035271	CG2021	99	70.213	ENSACLG00000011253	lsm8	98	70.213	Astatotilapia_calliptera
FBgn0035271	CG2021	99	71.277	ENSAMXG00000042902	lsm8	98	71.277	Astyanax_mexicanus
FBgn0035271	CG2021	99	69.149	ENSBTAG00000012649	LSM8	98	69.149	Bos_taurus
FBgn0035271	CG2021	97	51.087	WBGene00003082	lsm-8	94	51.087	Caenorhabditis_elegans
FBgn0035271	CG2021	99	69.149	ENSCJAG00000046406	LSM8	100	71.622	Callithrix_jacchus
FBgn0035271	CG2021	97	69.565	ENSCAFG00000016459	LSM8	93	69.565	Canis_familiaris
FBgn0035271	CG2021	87	68.675	ENSCAFG00020012800	-	65	68.675	Canis_lupus_dingo
FBgn0035271	CG2021	99	69.149	ENSCAFG00020007643	-	98	69.149	Canis_lupus_dingo
FBgn0035271	CG2021	93	67.045	ENSCHIG00000014201	LSM8	94	67.045	Capra_hircus
FBgn0035271	CG2021	99	69.149	ENSTSYG00000032434	LSM8	98	69.149	Carlito_syrichta
FBgn0035271	CG2021	78	70.270	ENSCAPG00000008253	LSM8	100	70.270	Cavia_aperea
FBgn0035271	CG2021	99	69.149	ENSCPOG00000035673	LSM8	98	69.149	Cavia_porcellus
FBgn0035271	CG2021	99	69.149	ENSCCAG00000021329	LSM8	100	71.622	Cebus_capucinus
FBgn0035271	CG2021	99	69.149	ENSCATG00000045302	LSM8	100	71.622	Cercocebus_atys
FBgn0035271	CG2021	99	69.149	ENSCLAG00000003726	LSM8	98	69.149	Chinchilla_lanigera
FBgn0035271	CG2021	99	69.149	ENSCSAG00000010802	-	98	69.149	Chlorocebus_sabaeus
FBgn0035271	CG2021	99	68.085	ENSCSAG00000019007	-	98	68.085	Chlorocebus_sabaeus
FBgn0035271	CG2021	89	69.412	ENSCPBG00000008154	LSM8	87	69.412	Chrysemys_picta_bellii
FBgn0035271	CG2021	99	61.702	ENSCING00000024877	-	98	61.702	Ciona_intestinalis
FBgn0035271	CG2021	99	69.149	ENSCANG00000040728	LSM8	100	71.622	Colobus_angolensis_palliatus
FBgn0035271	CG2021	99	69.149	ENSCGRG00001000450	Lsm8	98	69.149	Cricetulus_griseus_chok1gshd
FBgn0035271	CG2021	89	69.412	ENSCGRG00000005587	Lsm8	100	69.412	Cricetulus_griseus_crigri
FBgn0035271	CG2021	99	64.894	ENSCSEG00000004164	lsm8	98	64.894	Cynoglossus_semilaevis
FBgn0035271	CG2021	99	71.277	ENSCVAG00000020547	lsm8	98	71.277	Cyprinodon_variegatus
FBgn0035271	CG2021	99	68.085	ENSDARG00000091656	lsm8	98	68.085	Danio_rerio
FBgn0035271	CG2021	99	69.149	ENSDNOG00000034613	LSM8	98	69.149	Dasypus_novemcinctus
FBgn0035271	CG2021	99	69.149	ENSDORG00000027868	Lsm8	98	69.149	Dipodomys_ordii
FBgn0035271	CG2021	99	70.213	ENSETEG00000011594	LSM8	98	70.213	Echinops_telfairi
FBgn0035271	CG2021	78	72.973	ENSEBUG00000012017	lsm8	100	72.973	Eptatretus_burgeri
FBgn0035271	CG2021	99	69.149	ENSEASG00005008932	LSM8	61	69.149	Equus_asinus_asinus
FBgn0035271	CG2021	93	67.045	ENSECAG00000024025	LSM8	80	67.045	Equus_caballus
FBgn0035271	CG2021	99	68.085	ENSELUG00000010138	lsm8	98	68.085	Esox_lucius
FBgn0035271	CG2021	85	55.556	ENSFCAG00000044794	-	82	55.556	Felis_catus
FBgn0035271	CG2021	99	69.149	ENSFCAG00000036620	-	98	69.149	Felis_catus
FBgn0035271	CG2021	99	70.213	ENSFALG00000010023	LSM8	98	70.213	Ficedula_albicollis
FBgn0035271	CG2021	99	69.149	ENSFDAG00000019530	LSM8	98	69.149	Fukomys_damarensis
FBgn0035271	CG2021	99	70.213	ENSFHEG00000013729	lsm8	98	70.213	Fundulus_heteroclitus
FBgn0035271	CG2021	99	70.213	ENSGALG00000009110	LSM8	98	70.213	Gallus_gallus
FBgn0035271	CG2021	99	71.277	ENSGAFG00000001135	lsm8	98	71.277	Gambusia_affinis
FBgn0035271	CG2021	99	69.149	ENSGAGG00000017366	LSM8	98	69.149	Gopherus_agassizii
FBgn0035271	CG2021	99	69.149	ENSGGOG00000041883	LSM8	98	69.149	Gorilla_gorilla
FBgn0035271	CG2021	99	70.213	ENSHBUG00000003646	lsm8	98	70.213	Haplochromis_burtoni
FBgn0035271	CG2021	69	69.697	ENSHGLG00000001988	-	96	69.697	Heterocephalus_glaber_female
FBgn0035271	CG2021	99	64.894	ENSHGLG00000019782	-	98	64.894	Heterocephalus_glaber_female
FBgn0035271	CG2021	97	68.478	ENSHGLG00100003934	-	92	68.478	Heterocephalus_glaber_male
FBgn0035271	CG2021	99	64.894	ENSHGLG00100012166	-	98	64.894	Heterocephalus_glaber_male
FBgn0035271	CG2021	99	70.213	ENSHCOG00000005037	lsm8	98	70.213	Hippocampus_comes
FBgn0035271	CG2021	99	71.277	ENSIPUG00000019811	NAA38	98	71.277	Ictalurus_punctatus
FBgn0035271	CG2021	99	69.149	ENSSTOG00000009039	LSM8	98	69.149	Ictidomys_tridecemlineatus
FBgn0035271	CG2021	93	63.636	ENSSTOG00000034801	-	81	63.636	Ictidomys_tridecemlineatus
FBgn0035271	CG2021	99	69.149	ENSJJAG00000009031	Lsm8	97	69.149	Jaculus_jaculus
FBgn0035271	CG2021	99	70.213	ENSKMAG00000018983	lsm8	98	70.213	Kryptolebias_marmoratus
FBgn0035271	CG2021	99	69.149	ENSLACG00000010231	LSM8	98	69.149	Latimeria_chalumnae
FBgn0035271	CG2021	99	72.340	ENSLOCG00000015580	lsm8	98	72.340	Lepisosteus_oculatus
FBgn0035271	CG2021	99	68.421	ENSLAFG00000011242	LSM8	98	68.421	Loxodonta_africana
FBgn0035271	CG2021	99	65.957	ENSMFAG00000013044	-	98	65.957	Macaca_fascicularis
FBgn0035271	CG2021	99	69.149	ENSMFAG00000035798	LSM8	100	71.622	Macaca_fascicularis
FBgn0035271	CG2021	99	69.149	ENSMMUG00000046401	LSM8	100	71.622	Macaca_mulatta
FBgn0035271	CG2021	99	69.149	ENSMNEG00000036764	-	100	71.622	Macaca_nemestrina
FBgn0035271	CG2021	77	68.493	ENSMNEG00000011141	-	97	68.493	Macaca_nemestrina
FBgn0035271	CG2021	99	69.149	ENSMLEG00000035828	-	100	71.622	Mandrillus_leucophaeus
FBgn0035271	CG2021	99	60.638	ENSMLEG00000039324	-	98	60.638	Mandrillus_leucophaeus
FBgn0035271	CG2021	77	72.603	ENSMAMG00000018839	lsm8	97	72.603	Mastacembelus_armatus
FBgn0035271	CG2021	99	70.213	ENSMZEG00005019138	lsm8	98	70.213	Maylandia_zebra
FBgn0035271	CG2021	99	70.213	ENSMGAG00000008808	LSM8	98	70.213	Meleagris_gallopavo
FBgn0035271	CG2021	100	57.895	ENSMAUG00000015356	-	99	57.895	Mesocricetus_auratus
FBgn0035271	CG2021	78	66.216	ENSMAUG00000020287	-	100	64.865	Mesocricetus_auratus
FBgn0035271	CG2021	99	65.957	ENSMAUG00000015721	-	98	65.957	Mesocricetus_auratus
FBgn0035271	CG2021	99	69.149	ENSMICG00000042730	LSM8	98	69.149	Microcebus_murinus
FBgn0035271	CG2021	99	69.149	ENSMOCG00000001688	Lsm8	98	69.149	Microtus_ochrogaster
FBgn0035271	CG2021	77	72.603	ENSMMOG00000006046	lsm8	97	72.603	Mola_mola
FBgn0035271	CG2021	63	73.333	ENSMODG00000015729	LSM8	77	73.333	Monodelphis_domestica
FBgn0035271	CG2021	99	71.277	ENSMALG00000000405	lsm8	98	71.277	Monopterus_albus
FBgn0035271	CG2021	99	69.149	MGP_CAROLIEiJ_G0028125	-	98	69.149	Mus_caroli
FBgn0035271	CG2021	99	69.149	ENSMUSG00000044155	Lsm8	98	69.149	Mus_musculus
FBgn0035271	CG2021	99	69.149	MGP_PahariEiJ_G0021881	Lsm8	97	71.233	Mus_pahari
FBgn0035271	CG2021	99	69.149	MGP_SPRETEiJ_G0029125	-	98	69.149	Mus_spretus
FBgn0035271	CG2021	99	68.085	ENSMLUG00000027762	-	98	68.085	Myotis_lucifugus
FBgn0035271	CG2021	99	69.149	ENSMLUG00000006837	-	98	69.149	Myotis_lucifugus
FBgn0035271	CG2021	99	69.149	ENSNGAG00000016554	Lsm8	98	69.149	Nannospalax_galili
FBgn0035271	CG2021	99	70.213	ENSNBRG00000014441	lsm8	98	70.213	Neolamprologus_brichardi
FBgn0035271	CG2021	99	69.149	ENSNLEG00000011768	LSM8	98	69.149	Nomascus_leucogenys
FBgn0035271	CG2021	99	57.447	ENSMEUG00000007801	LSM8	98	57.447	Notamacropus_eugenii
FBgn0035271	CG2021	89	69.412	ENSOPRG00000014809	LSM8	100	69.412	Ochotona_princeps
FBgn0035271	CG2021	99	69.149	ENSODEG00000000418	-	98	69.149	Octodon_degus
FBgn0035271	CG2021	88	60.714	ENSODEG00000020290	-	98	60.714	Octodon_degus
FBgn0035271	CG2021	99	68.085	ENSOANG00000014536	LSM8	98	68.085	Ornithorhynchus_anatinus
FBgn0035271	CG2021	99	68.421	ENSOCUG00000017359	LSM8	98	68.421	Oryctolagus_cuniculus
FBgn0035271	CG2021	99	63.830	ENSORLG00000017432	lsm8	98	63.830	Oryzias_latipes
FBgn0035271	CG2021	99	63.830	ENSORLG00020004376	lsm8	98	63.830	Oryzias_latipes_hni
FBgn0035271	CG2021	99	70.213	ENSORLG00015003757	lsm8	98	70.213	Oryzias_latipes_hsok
FBgn0035271	CG2021	99	62.766	ENSOMEG00000022509	lsm8	98	62.766	Oryzias_melastigma
FBgn0035271	CG2021	99	69.149	ENSOGAG00000013377	LSM8	98	69.149	Otolemur_garnettii
FBgn0035271	CG2021	99	69.149	ENSOARG00000017974	LSM8	98	69.149	Ovis_aries
FBgn0035271	CG2021	77	71.233	ENSPPAG00000043228	-	97	71.233	Pan_paniscus
FBgn0035271	CG2021	99	69.149	ENSPPRG00000006444	LSM8	98	69.149	Panthera_pardus
FBgn0035271	CG2021	99	69.149	ENSPTIG00000004722	LSM8	98	69.149	Panthera_tigris_altaica
FBgn0035271	CG2021	77	71.233	ENSPTRG00000046596	-	97	71.233	Pan_troglodytes
FBgn0035271	CG2021	99	69.149	ENSPANG00000035470	-	100	71.622	Papio_anubis
FBgn0035271	CG2021	99	64.894	ENSPANG00000019395	-	98	64.894	Papio_anubis
FBgn0035271	CG2021	89	71.765	ENSPKIG00000006092	lsm8	86	71.765	Paramormyrops_kingsleyae
FBgn0035271	CG2021	77	71.233	ENSPSIG00000017054	LSM8	97	71.233	Pelodiscus_sinensis
FBgn0035271	CG2021	77	72.603	ENSPMGG00000016442	lsm8	97	72.603	Periophthalmus_magnuspinnatus
FBgn0035271	CG2021	78	71.622	ENSPEMG00000009153	Lsm8	100	71.622	Peromyscus_maniculatus_bairdii
FBgn0035271	CG2021	94	70.787	ENSPCIG00000021467	LSM8	94	70.787	Phascolarctos_cinereus
FBgn0035271	CG2021	99	71.277	ENSPFOG00000012340	lsm8	98	71.277	Poecilia_formosa
FBgn0035271	CG2021	97	67.391	ENSPLAG00000000516	lsm8	96	67.391	Poecilia_latipinna
FBgn0035271	CG2021	99	71.277	ENSPMEG00000022567	lsm8	98	71.277	Poecilia_mexicana
FBgn0035271	CG2021	77	67.500	ENSPREG00000005527	lsm8	72	67.500	Poecilia_reticulata
FBgn0035271	CG2021	99	69.149	ENSPPYG00000017942	LSM8	98	69.149	Pongo_abelii
FBgn0035271	CG2021	95	56.667	ENSPCOG00000017982	-	93	56.667	Propithecus_coquereli
FBgn0035271	CG2021	99	69.149	ENSPCOG00000003309	-	98	69.149	Propithecus_coquereli
FBgn0035271	CG2021	89	68.235	ENSPVAG00000000990	LSM8	100	68.235	Pteropus_vampyrus
FBgn0035271	CG2021	99	70.213	ENSPNYG00000011448	lsm8	98	70.213	Pundamilia_nyererei
FBgn0035271	CG2021	99	71.277	ENSPNAG00000010252	lsm8	98	71.277	Pygocentrus_nattereri
FBgn0035271	CG2021	99	69.149	ENSRNOG00000058677	Lsm8	98	69.149	Rattus_norvegicus
FBgn0035271	CG2021	99	69.149	ENSRBIG00000032851	LSM8	100	71.622	Rhinopithecus_bieti
FBgn0035271	CG2021	99	69.149	ENSRROG00000039618	LSM8	100	71.622	Rhinopithecus_roxellana
FBgn0035271	CG2021	99	69.149	ENSSBOG00000023223	LSM8	100	71.622	Saimiri_boliviensis_boliviensis
FBgn0035271	CG2021	99	69.149	ENSSHAG00000018435	-	98	69.149	Sarcophilus_harrisii
FBgn0035271	CG2021	99	70.213	ENSSFOG00015004412	lsm8	98	70.213	Scleropages_formosus
FBgn0035271	CG2021	77	71.233	ENSSMAG00000009458	lsm8	97	71.233	Scophthalmus_maximus
FBgn0035271	CG2021	99	70.213	ENSSDUG00000014702	lsm8	98	70.213	Seriola_dumerili
FBgn0035271	CG2021	77	72.603	ENSSLDG00000016870	lsm8	97	72.603	Seriola_lalandi_dorsalis
FBgn0035271	CG2021	76	72.222	ENSSARG00000009628	-	100	72.222	Sorex_araneus
FBgn0035271	CG2021	99	69.149	ENSSPUG00000017419	LSM8	98	69.149	Sphenodon_punctatus
FBgn0035271	CG2021	99	70.213	ENSSPAG00000021422	lsm8	98	70.213	Stegastes_partitus
FBgn0035271	CG2021	99	69.149	ENSSSCG00000021652	LSM8	98	69.149	Sus_scrofa
FBgn0035271	CG2021	99	70.213	ENSTGUG00000004730	-	98	70.213	Taeniopygia_guttata
FBgn0035271	CG2021	99	70.213	ENSTGUG00000016823	-	98	70.213	Taeniopygia_guttata
FBgn0035271	CG2021	99	70.213	ENSTRUG00000025192	lsm8	98	70.213	Takifugu_rubripes
FBgn0035271	CG2021	99	70.213	ENSTNIG00000002864	lsm8	98	70.213	Tetraodon_nigroviridis
FBgn0035271	CG2021	99	69.149	ENSTTRG00000001023	LSM8	98	69.149	Tursiops_truncatus
FBgn0035271	CG2021	93	67.045	ENSUAMG00000006943	-	92	67.045	Ursus_americanus
FBgn0035271	CG2021	93	67.045	ENSUMAG00000003073	LSM8	94	67.045	Ursus_maritimus
FBgn0035271	CG2021	99	69.149	ENSVPAG00000001530	LSM8	98	69.149	Vicugna_pacos
FBgn0035271	CG2021	77	71.233	ENSVVUG00000013248	-	80	71.233	Vulpes_vulpes
FBgn0035271	CG2021	94	68.539	ENSXETG00000021829	lsm8	92	68.539	Xenopus_tropicalis
FBgn0035271	CG2021	99	71.277	ENSXCOG00000012938	lsm8	98	71.277	Xiphophorus_couchianus
FBgn0035271	CG2021	99	71.277	ENSXMAG00000025919	lsm8	98	71.277	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005688	U6 snRNP	10908584.	NAS	Component
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component