EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035335 (Gene tree)
Gene ID: 38302
Gene Symbol: mRpL23
Alias: -
Full Name: mitochondrial ribosomal protein L23
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 861 bases
Position: chr3L:2372844-2373704
Accession: FBgn0035335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0072778	Ribosomal_L23	PF00276.20	1.5e-13	1	1
FBpp0288404	Ribosomal_L23	PF00276.20	1.5e-13	1	1
FBpp0303832	Ribosomal_L23	PF00276.20	1.5e-13	1	1
FBpp0303833	Ribosomal_L23	PF00276.20	1.5e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0289966	-	622	-	FBpp0288404	150 (aa)	-	Q9W021
FBtr0072900	-	597	-	FBpp0072778	150 (aa)	-	Q9W021
FBtr0331415	-	560	-	FBpp0303832	150 (aa)	-	Q9W021
FBtr0331416	-	591	-	FBpp0303833	150 (aa)	-	Q9W021

Gene Model

Click here to download FBgn0035335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035335's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035335	mRpL23	97	43.624	ENSG00000214026	MRPL23	96	43.624	Homo_sapiens
FBgn0035335	mRpL23	97	47.020	ENSAPOG00000013198	mrpl23	95	47.020	Acanthochromis_polyacanthus
FBgn0035335	mRpL23	99	43.226	ENSAMEG00000002153	-	98	43.226	Ailuropoda_melanoleuca
FBgn0035335	mRpL23	97	46.980	ENSACIG00000024327	mrpl23	96	46.980	Amphilophus_citrinellus
FBgn0035335	mRpL23	97	48.344	ENSAOCG00000013679	mrpl23	95	48.344	Amphiprion_ocellaris
FBgn0035335	mRpL23	97	48.344	ENSAPEG00000010298	mrpl23	95	48.344	Amphiprion_percula
FBgn0035335	mRpL23	97	46.980	ENSATEG00000019314	mrpl23	96	46.980	Anabas_testudineus
FBgn0035335	mRpL23	75	37.815	ENSAPLG00000012955	-	99	37.815	Anas_platyrhynchos
FBgn0035335	mRpL23	62	48.387	ENSACAG00000009700	-	98	48.387	Anolis_carolinensis
FBgn0035335	mRpL23	100	43.506	ENSANAG00000010507	-	100	43.506	Aotus_nancymaae
FBgn0035335	mRpL23	97	46.358	ENSACLG00000002565	mrpl23	95	46.358	Astatotilapia_calliptera
FBgn0035335	mRpL23	62	55.914	ENSAMXG00000016759	mrpl23	65	62.857	Astyanax_mexicanus
FBgn0035335	mRpL23	87	31.061	ENSBTAG00000000103	MRPL23	100	33.019	Bos_taurus
FBgn0035335	mRpL23	93	38.608	WBGene00020348	mrpl-23	96	38.608	Caenorhabditis_elegans
FBgn0035335	mRpL23	97	43.537	ENSCAFG00000010086	-	96	43.537	Canis_familiaris
FBgn0035335	mRpL23	97	43.537	ENSCAFG00020017439	-	96	43.537	Canis_lupus_dingo
FBgn0035335	mRpL23	97	41.497	ENSCHIG00000019224	-	96	41.497	Capra_hircus
FBgn0035335	mRpL23	100	41.401	ENSTSYG00000030664	-	100	41.401	Carlito_syrichta
FBgn0035335	mRpL23	97	36.552	ENSCAPG00000012400	-	100	36.552	Cavia_aperea
FBgn0035335	mRpL23	97	42.759	ENSCPOG00000035162	-	96	42.759	Cavia_porcellus
FBgn0035335	mRpL23	97	41.379	ENSCCAG00000021662	-	96	41.379	Cebus_capucinus
FBgn0035335	mRpL23	94	42.361	ENSCATG00000019817	-	88	42.361	Cercocebus_atys
FBgn0035335	mRpL23	98	43.046	ENSCATG00000037780	-	96	43.046	Cercocebus_atys
FBgn0035335	mRpL23	97	42.069	ENSCLAG00000015446	-	96	42.069	Chinchilla_lanigera
FBgn0035335	mRpL23	97	41.558	ENSCSAG00000019043	-	96	41.558	Chlorocebus_sabaeus
FBgn0035335	mRpL23	97	42.953	ENSCSAG00000009837	-	96	42.953	Chlorocebus_sabaeus
FBgn0035335	mRpL23	97	44.966	ENSCPBG00000007389	-	95	44.966	Chrysemys_picta_bellii
FBgn0035335	mRpL23	97	42.484	ENSCANG00000032318	-	100	42.484	Colobus_angolensis_palliatus
FBgn0035335	mRpL23	97	42.568	ENSCGRG00001000462	Mrpl23	96	42.568	Cricetulus_griseus_chok1gshd
FBgn0035335	mRpL23	97	42.568	ENSCGRG00000002207	Mrpl23	96	42.568	Cricetulus_griseus_crigri
FBgn0035335	mRpL23	97	44.966	ENSCSEG00000008738	mrpl23	99	44.966	Cynoglossus_semilaevis
FBgn0035335	mRpL23	97	46.358	ENSCVAG00000002822	mrpl23	95	46.358	Cyprinodon_variegatus
FBgn0035335	mRpL23	97	47.651	ENSDARG00000045696	mrpl23	96	47.651	Danio_rerio
FBgn0035335	mRpL23	97	37.500	ENSDNOG00000047306	-	96	38.514	Dasypus_novemcinctus
FBgn0035335	mRpL23	97	41.216	ENSDORG00000027504	Mrpl23	99	41.727	Dipodomys_ordii
FBgn0035335	mRpL23	97	44.079	ENSEASG00005000456	-	54	44.079	Equus_asinus_asinus
FBgn0035335	mRpL23	97	44.079	ENSECAG00000024486	-	51	44.079	Equus_caballus
FBgn0035335	mRpL23	100	46.452	ENSELUG00000022256	RM23	100	46.452	Esox_lucius
FBgn0035335	mRpL23	97	46.053	ENSFCAG00000018795	-	96	45.395	Felis_catus
FBgn0035335	mRpL23	95	46.000	ENSFALG00000011598	-	95	46.980	Ficedula_albicollis
FBgn0035335	mRpL23	97	42.759	ENSFDAG00000013606	-	96	42.759	Fukomys_damarensis
FBgn0035335	mRpL23	97	47.682	ENSFHEG00000010978	mrpl23	92	47.682	Fundulus_heteroclitus
FBgn0035335	mRpL23	95	44.667	ENSGMOG00000004509	mrpl23	100	44.667	Gadus_morhua
FBgn0035335	mRpL23	97	43.421	ENSGALG00000006561	-	68	43.421	Gallus_gallus
FBgn0035335	mRpL23	100	46.154	ENSGAFG00000021827	mrpl23	99	46.154	Gambusia_affinis
FBgn0035335	mRpL23	97	48.344	ENSGACG00000011130	mrpl23	95	48.344	Gasterosteus_aculeatus
FBgn0035335	mRpL23	97	44.966	ENSGAGG00000023827	-	95	44.966	Gopherus_agassizii
FBgn0035335	mRpL23	97	44.667	ENSGGOG00000000333	-	83	44.667	Gorilla_gorilla
FBgn0035335	mRpL23	97	46.358	ENSHBUG00000023397	mrpl23	95	46.358	Haplochromis_burtoni
FBgn0035335	mRpL23	97	41.379	ENSHGLG00000016722	-	96	41.379	Heterocephalus_glaber_female
FBgn0035335	mRpL23	97	41.379	ENSHGLG00100003075	-	96	41.379	Heterocephalus_glaber_male
FBgn0035335	mRpL23	97	48.026	ENSHCOG00000009092	mrpl23	95	48.026	Hippocampus_comes
FBgn0035335	mRpL23	100	48.387	ENSIPUG00000005383	mrpl23	100	48.387	Ictalurus_punctatus
FBgn0035335	mRpL23	97	43.537	ENSSTOG00000024573	-	96	43.537	Ictidomys_tridecemlineatus
FBgn0035335	mRpL23	97	42.069	ENSJJAG00000003519	Mrpl23	96	42.069	Jaculus_jaculus
FBgn0035335	mRpL23	97	45.033	ENSKMAG00000001599	mrpl23	95	45.033	Kryptolebias_marmoratus
FBgn0035335	mRpL23	97	45.033	ENSLBEG00000002580	mrpl23	95	45.033	Labrus_bergylta
FBgn0035335	mRpL23	97	48.993	ENSLACG00000011528	mrpl23	96	48.993	Latimeria_chalumnae
FBgn0035335	mRpL23	97	44.966	ENSLOCG00000001825	mrpl23	96	44.966	Lepisosteus_oculatus
FBgn0035335	mRpL23	97	42.953	ENSMFAG00000034529	-	96	42.953	Macaca_fascicularis
FBgn0035335	mRpL23	71	38.318	ENSMFAG00000039715	-	100	38.318	Macaca_fascicularis
FBgn0035335	mRpL23	97	43.137	ENSMMUG00000031268	MRPL23	96	43.137	Macaca_mulatta
FBgn0035335	mRpL23	71	39.450	ENSMNEG00000033446	-	100	39.450	Macaca_nemestrina
FBgn0035335	mRpL23	97	42.953	ENSMNEG00000036690	-	96	42.953	Macaca_nemestrina
FBgn0035335	mRpL23	98	43.046	ENSMLEG00000015767	-	100	42.953	Mandrillus_leucophaeus
FBgn0035335	mRpL23	97	47.682	ENSMAMG00000003609	mrpl23	95	47.682	Mastacembelus_armatus
FBgn0035335	mRpL23	97	46.358	ENSMZEG00005017456	mrpl23	95	46.358	Maylandia_zebra
FBgn0035335	mRpL23	97	44.295	ENSMGAG00000007978	-	97	44.295	Meleagris_gallopavo
FBgn0035335	mRpL23	97	43.151	ENSMAUG00000018693	Mrpl23	100	43.151	Mesocricetus_auratus
FBgn0035335	mRpL23	97	42.759	ENSMICG00000042091	-	97	40.385	Microcebus_murinus
FBgn0035335	mRpL23	97	44.138	ENSMOCG00000018436	Mrpl23	96	44.138	Microtus_ochrogaster
FBgn0035335	mRpL23	97	45.695	ENSMMOG00000018097	mrpl23	95	45.695	Mola_mola
FBgn0035335	mRpL23	97	42.763	ENSMODG00000003437	-	96	42.763	Monodelphis_domestica
FBgn0035335	mRpL23	97	44.295	ENSMALG00000014571	mrpl23	99	44.295	Monopterus_albus
FBgn0035335	mRpL23	97	43.448	MGP_CAROLIEiJ_G0030727	Mrpl23	96	43.448	Mus_caroli
FBgn0035335	mRpL23	97	43.448	ENSMUSG00000037772	Mrpl23	100	40.566	Mus_musculus
FBgn0035335	mRpL23	97	44.138	MGP_PahariEiJ_G0013923	Mrpl23	96	44.138	Mus_pahari
FBgn0035335	mRpL23	97	43.448	MGP_SPRETEiJ_G0031836	Mrpl23	96	43.448	Mus_spretus
FBgn0035335	mRpL23	97	40.132	ENSMPUG00000002923	-	95	40.132	Mustela_putorius_furo
FBgn0035335	mRpL23	97	42.105	ENSMPUG00000005658	-	96	42.763	Mustela_putorius_furo
FBgn0035335	mRpL23	84	43.651	ENSNGAG00000012877	-	91	43.651	Nannospalax_galili
FBgn0035335	mRpL23	97	42.568	ENSNGAG00000023444	-	100	42.568	Nannospalax_galili
FBgn0035335	mRpL23	97	47.020	ENSNBRG00000007183	mrpl23	95	47.020	Neolamprologus_brichardi
FBgn0035335	mRpL23	97	44.966	ENSNLEG00000026950	-	96	44.966	Nomascus_leucogenys
FBgn0035335	mRpL23	65	48.454	ENSOPRG00000018353	-	71	48.454	Ochotona_princeps
FBgn0035335	mRpL23	96	36.111	ENSODEG00000012131	-	95	36.111	Octodon_degus
FBgn0035335	mRpL23	97	42.759	ENSODEG00000017262	-	96	42.759	Octodon_degus
FBgn0035335	mRpL23	97	47.020	ENSONIG00000014500	mrpl23	92	47.020	Oreochromis_niloticus
FBgn0035335	mRpL23	96	49.333	ENSORLG00000025383	mrpl23	95	49.333	Oryzias_latipes
FBgn0035335	mRpL23	100	48.077	ENSORLG00020008379	mrpl23	99	48.077	Oryzias_latipes_hni
FBgn0035335	mRpL23	97	49.669	ENSOMEG00000019132	mrpl23	76	49.669	Oryzias_melastigma
FBgn0035335	mRpL23	97	44.295	ENSOGAG00000029988	-	96	44.295	Otolemur_garnettii
FBgn0035335	mRpL23	72	48.148	ENSOARG00000000706	-	68	48.148	Ovis_aries
FBgn0035335	mRpL23	97	44.295	ENSPPAG00000034414	-	96	44.295	Pan_paniscus
FBgn0035335	mRpL23	97	46.053	ENSPPRG00000013232	-	97	45.395	Panthera_pardus
FBgn0035335	mRpL23	97	44.295	ENSPTRG00000033746	MRPL23	96	44.295	Pan_troglodytes
FBgn0035335	mRpL23	97	42.953	ENSPANG00000018813	-	96	42.953	Papio_anubis
FBgn0035335	mRpL23	100	47.097	ENSPKIG00000001102	mrpl23	100	47.097	Paramormyrops_kingsleyae
FBgn0035335	mRpL23	84	41.538	ENSPSIG00000012834	-	100	41.538	Pelodiscus_sinensis
FBgn0035335	mRpL23	93	44.138	ENSPMGG00000006407	mrpl23	95	44.138	Periophthalmus_magnuspinnatus
FBgn0035335	mRpL23	97	42.759	ENSPEMG00000018572	Mrpl23	96	42.759	Peromyscus_maniculatus_bairdii
FBgn0035335	mRpL23	96	47.973	ENSPMAG00000005259	mrpl23	95	47.973	Petromyzon_marinus
FBgn0035335	mRpL23	73	45.455	ENSPCIG00000027047	-	70	44.144	Phascolarctos_cinereus
FBgn0035335	mRpL23	97	46.309	ENSPFOG00000014159	mrpl23	95	46.309	Poecilia_formosa
FBgn0035335	mRpL23	97	45.638	ENSPLAG00000023456	mrpl23	96	45.638	Poecilia_latipinna
FBgn0035335	mRpL23	97	46.980	ENSPMEG00000012252	mrpl23	95	46.980	Poecilia_mexicana
FBgn0035335	mRpL23	97	46.309	ENSPREG00000019951	mrpl23	95	46.309	Poecilia_reticulata
FBgn0035335	mRpL23	97	43.624	ENSPPYG00000002918	-	96	43.624	Pongo_abelii
FBgn0035335	mRpL23	97	42.953	ENSPCOG00000026555	-	100	42.953	Propithecus_coquereli
FBgn0035335	mRpL23	63	50.000	ENSPVAG00000000331	-	62	50.000	Pteropus_vampyrus
FBgn0035335	mRpL23	97	47.020	ENSPNYG00000015541	mrpl23	95	47.020	Pundamilia_nyererei
FBgn0035335	mRpL23	97	48.993	ENSPNAG00000010548	mrpl23	96	48.993	Pygocentrus_nattereri
FBgn0035335	mRpL23	97	43.448	ENSRNOG00000020354	Mrpl23	96	43.448	Rattus_norvegicus
FBgn0035335	mRpL23	97	42.484	ENSRBIG00000041638	-	96	42.484	Rhinopithecus_bieti
FBgn0035335	mRpL23	98	42.581	ENSRROG00000004661	-	100	42.484	Rhinopithecus_roxellana
FBgn0035335	mRpL23	97	41.379	ENSSBOG00000025338	-	81	41.379	Saimiri_boliviensis_boliviensis
FBgn0035335	mRpL23	97	42.208	ENSSHAG00000002716	-	100	42.208	Sarcophilus_harrisii
FBgn0035335	mRpL23	97	49.664	ENSSFOG00015002519	mrpl23	96	49.664	Scleropages_formosus
FBgn0035335	mRpL23	97	42.953	ENSSMAG00000009264	mrpl23	95	42.953	Scophthalmus_maximus
FBgn0035335	mRpL23	97	48.344	ENSSDUG00000019634	mrpl23	99	48.344	Seriola_dumerili
FBgn0035335	mRpL23	97	48.344	ENSSLDG00000012055	mrpl23	95	48.344	Seriola_lalandi_dorsalis
FBgn0035335	mRpL23	100	40.127	ENSSPUG00000002656	-	100	40.127	Sphenodon_punctatus
FBgn0035335	mRpL23	97	47.682	ENSSPAG00000001601	mrpl23	99	47.682	Stegastes_partitus
FBgn0035335	mRpL23	97	42.759	ENSSSCG00000038364	-	96	42.759	Sus_scrofa
FBgn0035335	mRpL23	97	44.737	ENSTGUG00000009338	MRPL23	100	44.737	Taeniopygia_guttata
FBgn0035335	mRpL23	97	44.295	ENSTRUG00000009637	mrpl23	95	44.295	Takifugu_rubripes
FBgn0035335	mRpL23	62	53.763	ENSTNIG00000010463	mrpl23	100	53.763	Tetraodon_nigroviridis
FBgn0035335	mRpL23	63	51.064	ENSTTRG00000009281	-	56	51.064	Tursiops_truncatus
FBgn0035335	mRpL23	97	43.421	ENSUAMG00000020867	-	96	43.421	Ursus_americanus
FBgn0035335	mRpL23	97	43.421	ENSUMAG00000006227	-	82	43.421	Ursus_maritimus
FBgn0035335	mRpL23	97	44.218	ENSVVUG00000002581	-	75	44.218	Vulpes_vulpes
FBgn0035335	mRpL23	72	51.852	ENSXETG00000014017	mrpl23	96	42.282	Xenopus_tropicalis
FBgn0035335	mRpL23	100	41.026	ENSXCOG00000020628	mrpl23	100	41.026	Xiphophorus_couchianus
FBgn0035335	mRpL23	97	47.020	ENSXMAG00000015496	mrpl23	95	47.020	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	11279069.	ISS	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0005762	mitochondrial large ribosomal subunit	21873635.	IBA	Component
GO:0005762	mitochondrial large ribosomal subunit	11279069.	ISS	Component
GO:0005762	mitochondrial large ribosomal subunit	17927810.	TAS	Component
GO:0006412	translation	11279069.	ISS	Process
GO:0032543	mitochondrial translation	21873635.	IBA	Process
GO:0032543	mitochondrial translation	17927810.	TAS	Process