EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035753 (Gene tree)
Gene ID: 38794
Gene Symbol: RpL18
Alias: -
Full Name: Ribosomal protein L18
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1149
Position: chr3L: 7240203-7241351
Accession: FBgn0035753
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0345036	-	694	-	FBpp0311286	188 (aa)	-	Q9VS34
FBtr0076892	-	724	-	FBpp0076602	188 (aa)	-	Q9VS34
FBtr0333370	-	756	-	FBpp0305562	188 (aa)	-	Q9VS34

Gene Model

Click here to download FBgn0035753's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035753's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035753	RpL18	99	67.914	WBGene00004430	rpl-18	99	67.914	Caenorhabditis_elegans
FBgn0035753	RpL18	96	67.403	ENSDARG00000029533	rpl18	99	67.403	Danio_rerio
FBgn0035753	RpL18	99	69.355	ENSG00000063177	RPL18	99	69.519	Homo_sapiens
FBgn0035753	RpL18	93	69.714	ENSMUSG00000059070	Rpl18	99	70.588	Mus_musculus
FBgn0035753	RpL18	99	57.447	YOL120C	RPL18A	99	56.915	Saccharomyces_cerevisiae
FBgn0035753	RpL18	99	57.447	YNL301C	RPL18B	99	56.915	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002181	cytoplasmic translation	16889426.	IC	Process
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003735	structural constituent of ribosome	16889426.	HDA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0006412	translation	-	IEA	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0022625	cytosolic large ribosomal subunit	17927810.	TAS	Component
GO:0022626	cytosolic ribosome	16889426.	HDA	Component