EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0035872 (Gene tree)
Gene ID: 38937
Gene Symbol: CG7185
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5010 bases
Position: chr3L:8310493-8315502
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0293170	RRM_1	PF00076.22	1.9e-06	1	1
FBpp0076433	RRM_1	PF00076.22	2.2e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0076710	-	2862	-	FBpp0076433	652 (aa)	-	Q9VSH4
FBtr0304628	-	2721	-	FBpp0293170	605 (aa)	-	M9NF33

Gene Model

Click here to download FBgn0035872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0035872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0035872	CG7185	58	46.012	ENSG00000149532	CPSF7	67	69.231	Homo_sapiens
FBgn0035872	CG7185	57	53.049	ENSG00000111605	CPSF6	76	39.310	Homo_sapiens
FBgn0035872	CG7185	65	35.533	ENSANAG00000024635	CPSF7	66	42.336	Aotus_nancymaae
FBgn0035872	CG7185	60	48.980	ENSAMXG00000016745	CPSF6	54	77.922	Astyanax_mexicanus
FBgn0035872	CG7185	58	46.012	ENSCJAG00000019282	CPSF7	65	69.231	Callithrix_jacchus
FBgn0035872	CG7185	51	48.066	ENSCAFG00000000424	CPSF6	85	39.738	Canis_familiaris
FBgn0035872	CG7185	61	45.604	ENSCSEG00000008967	cpsf6	87	39.130	Cynoglossus_semilaevis
FBgn0035872	CG7185	75	44.505	ENSCVAG00000014857	cpsf6	86	39.754	Cyprinodon_variegatus
FBgn0035872	CG7185	65	46.610	ENSDARG00000018618	cpsf6	53	45.055	Danio_rerio
FBgn0035872	CG7185	54	50.000	ENSDNOG00000018517	CPSF7	65	70.513	Dasypus_novemcinctus
FBgn0035872	CG7185	53	50.000	ENSECAG00000018521	CPSF7	63	70.513	Equus_caballus
FBgn0035872	CG7185	50	49.640	ENSEEUG00000005966	-	58	70.513	Erinaceus_europaeus
FBgn0035872	CG7185	53	50.000	ENSFCAG00000013677	CPSF7	63	70.513	Felis_catus
FBgn0035872	CG7185	86	45.810	ENSFALG00000011927	CPSF7	57	68.750	Ficedula_albicollis
FBgn0035872	CG7185	53	47.205	ENSHGLG00100013933	-	55	70.513	Heterocephalus_glaber_male
FBgn0035872	CG7185	74	42.202	ENSKMAG00000014794	cpsf6	54	50.307	Kryptolebias_marmoratus
FBgn0035872	CG7185	62	47.938	ENSMALG00000014908	cpsf6	59	49.080	Monopterus_albus
FBgn0035872	CG7185	64	59.322	ENSMLUG00000028728	-	76	76.623	Myotis_lucifugus
FBgn0035872	CG7185	62	47.414	ENSODEG00000004418	-	52	79.221	Octodon_degus
FBgn0035872	CG7185	56	46.012	ENSOCUG00000024726	CPSF7	56	69.231	Oryctolagus_cuniculus
FBgn0035872	CG7185	58	35.772	ENSORLG00015011091	CPSF7	52	46.094	Oryzias_latipes_hsok
FBgn0035872	CG7185	57	46.626	ENSPPRG00000008538	CPSF7	52	70.513	Panthera_pardus
FBgn0035872	CG7185	66	37.900	ENSPKIG00000018054	CPSF7	56	58.228	Paramormyrops_kingsleyae
FBgn0035872	CG7185	58	48.387	ENSPCIG00000002551	CPSF7	63	70.000	Phascolarctos_cinereus
FBgn0035872	CG7185	50	61.947	ENSPFOG00000006990	cpsf6	86	41.770	Poecilia_formosa
FBgn0035872	CG7185	54	46.897	ENSPLAG00000005715	cpsf6	87	40.000	Poecilia_latipinna
FBgn0035872	CG7185	58	46.012	ENSRBIG00000031429	CPSF7	63	69.231	Rhinopithecus_bieti
FBgn0035872	CG7185	53	52.893	ENSSPUG00000019344	CPSF7	71	51.240	Sphenodon_punctatus
FBgn0035872	CG7185	54	50.000	ENSSSCG00000013083	CPSF7	65	70.513	Sus_scrofa
FBgn0035872	CG7185	56	43.750	ENSTGUG00000006513	CPSF7	56	64.935	Taeniopygia_guttata
FBgn0035872	CG7185	53	46.108	ENSTTRG00000011085	CPSF7	52	70.513	Tursiops_truncatus
FBgn0035872	CG7185	54	50.000	ENSVVUG00000004939	CPSF7	65	70.513	Vulpes_vulpes
FBgn0035872	CG7185	85	32.186	ENSXETG00000006715	cpsf7	54	36.559	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0003729	mRNA binding	29606597.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	26896675.	HDA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	29606597.	IDA	Component
GO:0010508	positive regulation of autophagy	29606597.	IGI	Process
GO:0043484	regulation of RNA splicing	29606597.	IMP	Process