EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0036277 (Gene tree)
Gene ID: 39408
Gene Symbol: CG10418
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 561 bases
Position: chr3L:12336676-12337236
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075686	LSM	PF01423.22	2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0075954	-	437	-	FBpp0075686	95 (aa)	-	Q9VTW6

Gene Model

Click here to download FBgn0036277's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0036277's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0036277	CG10418	93	37.778	FBgn0032240	CG17768	56	37.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0036277	CG10418	96	95.604	ENSG00000204392	LSM2	96	95.604	Homo_sapiens
FBgn0036277	CG10418	96	95.604	ENSAPOG00000017967	si:ch73-14h10.2	96	95.604	Acanthochromis_polyacanthus
FBgn0036277	CG10418	95	95.556	ENSAMEG00000006483	LSM2	96	95.556	Ailuropoda_melanoleuca
FBgn0036277	CG10418	95	95.556	ENSACIG00000007795	si:ch73-14h10.2	60	95.556	Amphilophus_citrinellus
FBgn0036277	CG10418	95	95.556	ENSAOCG00000006949	si:ch73-14h10.2	74	95.556	Amphiprion_ocellaris
FBgn0036277	CG10418	95	95.556	ENSAPEG00000020375	si:ch73-14h10.2	83	95.556	Amphiprion_percula
FBgn0036277	CG10418	96	95.604	ENSATEG00000011376	si:ch73-14h10.2	96	95.604	Anabas_testudineus
FBgn0036277	CG10418	95	95.556	ENSACAG00000017281	LSM2	87	95.556	Anolis_carolinensis
FBgn0036277	CG10418	76	88.889	ENSANAG00000028033	-	77	88.889	Aotus_nancymaae
FBgn0036277	CG10418	96	95.604	ENSANAG00000028372	LSM2	96	95.604	Aotus_nancymaae
FBgn0036277	CG10418	96	95.604	ENSACLG00000024717	smx5	96	95.604	Astatotilapia_calliptera
FBgn0036277	CG10418	96	95.604	ENSAMXG00000036868	si:ch73-14h10.2	96	95.604	Astyanax_mexicanus
FBgn0036277	CG10418	96	95.604	ENSBTAG00000005634	LSM2	96	95.604	Bos_taurus
FBgn0036277	CG10418	94	84.270	WBGene00001808	gut-2	92	84.270	Caenorhabditis_elegans
FBgn0036277	CG10418	96	95.604	ENSCJAG00000040899	LSM2	96	95.604	Callithrix_jacchus
FBgn0036277	CG10418	71	94.030	ENSCAFG00020016978	-	83	94.030	Canis_lupus_dingo
FBgn0036277	CG10418	95	95.556	ENSCHIG00000016153	LSM2	96	95.556	Capra_hircus
FBgn0036277	CG10418	96	95.604	ENSTSYG00000034844	LSM2	96	95.604	Carlito_syrichta
FBgn0036277	CG10418	95	90.000	ENSTSYG00000030015	-	96	90.000	Carlito_syrichta
FBgn0036277	CG10418	72	95.588	ENSCAPG00000009970	LSM2	87	95.588	Cavia_aperea
FBgn0036277	CG10418	96	95.604	ENSCPOG00000021053	LSM2	96	95.604	Cavia_porcellus
FBgn0036277	CG10418	96	95.604	ENSCCAG00000024276	LSM2	96	95.604	Cebus_capucinus
FBgn0036277	CG10418	96	95.604	ENSCATG00000013737	LSM2	96	95.604	Cercocebus_atys
FBgn0036277	CG10418	96	95.604	ENSCLAG00000008081	LSM2	96	95.604	Chinchilla_lanigera
FBgn0036277	CG10418	96	95.604	ENSCSAG00000008800	LSM2	96	95.604	Chlorocebus_sabaeus
FBgn0036277	CG10418	96	95.604	ENSCHOG00000007702	LSM2	96	95.604	Choloepus_hoffmanni
FBgn0036277	CG10418	100	91.579	ENSCING00000022677	-	100	91.579	Ciona_intestinalis
FBgn0036277	CG10418	96	95.604	ENSCANG00000039576	LSM2	96	95.604	Colobus_angolensis_palliatus
FBgn0036277	CG10418	96	95.604	ENSCGRG00001013932	Lsm2	96	95.604	Cricetulus_griseus_chok1gshd
FBgn0036277	CG10418	72	95.588	ENSCGRG00000013311	Lsm2	59	95.588	Cricetulus_griseus_crigri
FBgn0036277	CG10418	96	95.604	ENSCSEG00000002911	si:ch73-14h10.2	96	95.604	Cynoglossus_semilaevis
FBgn0036277	CG10418	95	95.556	ENSCVAG00000015394	si:ch73-14h10.2	85	95.556	Cyprinodon_variegatus
FBgn0036277	CG10418	95	96.667	ENSDARG00000070867	smx5	95	96.667	Danio_rerio
FBgn0036277	CG10418	95	95.556	ENSDNOG00000002633	LSM2	96	95.556	Dasypus_novemcinctus
FBgn0036277	CG10418	96	95.604	ENSDORG00000026571	Lsm2	96	95.604	Dipodomys_ordii
FBgn0036277	CG10418	95	95.556	ENSEASG00005015670	LSM2	76	95.556	Equus_asinus_asinus
FBgn0036277	CG10418	95	95.556	ENSECAG00000018791	LSM2	76	95.556	Equus_caballus
FBgn0036277	CG10418	96	95.604	ENSELUG00000008241	smx5	96	95.604	Esox_lucius
FBgn0036277	CG10418	96	95.604	ENSFCAG00000045887	LSM2	96	95.604	Felis_catus
FBgn0036277	CG10418	96	95.604	ENSFDAG00000000390	LSM2	96	95.604	Fukomys_damarensis
FBgn0036277	CG10418	95	92.391	ENSFHEG00000009619	si:ch73-14h10.2	96	92.391	Fundulus_heteroclitus
FBgn0036277	CG10418	95	95.556	ENSGMOG00000019208	si:ch73-14h10.2	96	95.556	Gadus_morhua
FBgn0036277	CG10418	96	95.604	ENSGAFG00000017286	si:ch73-14h10.2	96	95.604	Gambusia_affinis
FBgn0036277	CG10418	96	95.604	ENSGACG00000003827	si:ch73-14h10.2	96	95.604	Gasterosteus_aculeatus
FBgn0036277	CG10418	96	95.604	ENSGAGG00000012458	LSM2	96	95.604	Gopherus_agassizii
FBgn0036277	CG10418	96	95.604	ENSGGOG00000011383	LSM2	96	95.604	Gorilla_gorilla
FBgn0036277	CG10418	96	95.604	ENSHGLG00000011299	LSM2	96	95.604	Heterocephalus_glaber_female
FBgn0036277	CG10418	96	95.604	ENSHGLG00100017194	LSM2	96	95.604	Heterocephalus_glaber_male
FBgn0036277	CG10418	96	95.604	ENSHCOG00000014057	si:ch73-14h10.2	96	95.604	Hippocampus_comes
FBgn0036277	CG10418	96	95.604	ENSIPUG00000010539	lsm2	96	95.604	Ictalurus_punctatus
FBgn0036277	CG10418	96	95.604	ENSSTOG00000013144	LSM2	96	95.604	Ictidomys_tridecemlineatus
FBgn0036277	CG10418	89	72.941	ENSJJAG00000019477	-	94	72.941	Jaculus_jaculus
FBgn0036277	CG10418	96	95.604	ENSKMAG00000014909	si:ch73-14h10.2	96	95.604	Kryptolebias_marmoratus
FBgn0036277	CG10418	95	94.444	ENSLBEG00000025781	si:ch73-14h10.2	94	94.444	Labrus_bergylta
FBgn0036277	CG10418	96	95.604	ENSLACG00000015064	LSM2	96	95.604	Latimeria_chalumnae
FBgn0036277	CG10418	96	95.604	ENSLOCG00000005228	si:ch73-14h10.2	96	95.604	Lepisosteus_oculatus
FBgn0036277	CG10418	95	95.556	ENSLAFG00000016139	LSM2	96	95.556	Loxodonta_africana
FBgn0036277	CG10418	96	95.604	ENSMFAG00000001016	LSM2	96	95.604	Macaca_fascicularis
FBgn0036277	CG10418	95	78.889	ENSMMUG00000045473	-	92	78.889	Macaca_mulatta
FBgn0036277	CG10418	96	95.604	ENSMMUG00000006832	LSM2	96	95.604	Macaca_mulatta
FBgn0036277	CG10418	75	81.690	ENSMNEG00000040973	-	87	81.690	Macaca_nemestrina
FBgn0036277	CG10418	96	95.604	ENSMNEG00000045355	LSM2	96	95.604	Macaca_nemestrina
FBgn0036277	CG10418	96	95.604	ENSMLEG00000037369	-	96	95.604	Mandrillus_leucophaeus
FBgn0036277	CG10418	95	77.778	ENSMLEG00000031181	-	92	77.778	Mandrillus_leucophaeus
FBgn0036277	CG10418	96	95.604	ENSMAMG00000010053	si:ch73-14h10.2	70	95.604	Mastacembelus_armatus
FBgn0036277	CG10418	95	93.478	ENSMZEG00005008688	si:ch73-14h10.2	96	93.478	Maylandia_zebra
FBgn0036277	CG10418	96	95.604	ENSMAUG00000021966	Lsm2	96	95.604	Mesocricetus_auratus
FBgn0036277	CG10418	72	75.000	ENSMICG00000046764	-	86	75.000	Microcebus_murinus
FBgn0036277	CG10418	96	95.604	ENSMOCG00000015306	Lsm2	96	95.604	Microtus_ochrogaster
FBgn0036277	CG10418	95	94.444	ENSMMOG00000005603	si:ch73-14h10.2	96	94.444	Mola_mola
FBgn0036277	CG10418	95	95.556	ENSMODG00000015177	LSM2	95	95.556	Monodelphis_domestica
FBgn0036277	CG10418	96	95.604	ENSMALG00000016490	si:ch73-14h10.2	96	95.604	Monopterus_albus
FBgn0036277	CG10418	96	95.604	MGP_CAROLIEiJ_G0021490	Lsm2	96	95.604	Mus_caroli
FBgn0036277	CG10418	96	95.604	ENSMUSG00000007050	Lsm2	96	95.604	Mus_musculus
FBgn0036277	CG10418	96	95.604	MGP_PahariEiJ_G0020485	Lsm2	96	95.604	Mus_pahari
FBgn0036277	CG10418	96	95.604	MGP_SPRETEiJ_G0022395	Lsm2	96	95.604	Mus_spretus
FBgn0036277	CG10418	96	95.604	ENSNGAG00000003997	Lsm2	96	95.604	Nannospalax_galili
FBgn0036277	CG10418	95	93.478	ENSNBRG00000012904	si:ch73-14h10.2	96	93.478	Neolamprologus_brichardi
FBgn0036277	CG10418	96	95.604	ENSNLEG00000035542	LSM2	96	95.604	Nomascus_leucogenys
FBgn0036277	CG10418	71	95.522	ENSMEUG00000003419	LSM2	94	95.522	Notamacropus_eugenii
FBgn0036277	CG10418	96	95.604	ENSOPRG00000003668	LSM2	96	95.604	Ochotona_princeps
FBgn0036277	CG10418	96	95.604	ENSODEG00000017583	LSM2	96	95.604	Octodon_degus
FBgn0036277	CG10418	96	95.604	ENSONIG00000019321	si:ch73-14h10.2	96	95.604	Oreochromis_niloticus
FBgn0036277	CG10418	95	95.556	ENSOANG00000005398	LSM2	96	95.556	Ornithorhynchus_anatinus
FBgn0036277	CG10418	96	95.604	ENSOCUG00000002583	LSM2	96	95.604	Oryctolagus_cuniculus
FBgn0036277	CG10418	96	95.604	ENSORLG00000029858	si:ch73-14h10.2	96	95.604	Oryzias_latipes
FBgn0036277	CG10418	96	72.500	ENSORLG00015000465	si:ch73-14h10.2	97	72.500	Oryzias_latipes_hsok
FBgn0036277	CG10418	96	95.604	ENSOMEG00000002892	si:ch73-14h10.2	96	95.604	Oryzias_melastigma
FBgn0036277	CG10418	95	95.556	ENSOARG00000004575	LSM2	96	95.556	Ovis_aries
FBgn0036277	CG10418	79	80.000	ENSPPAG00000043941	-	93	80.000	Pan_paniscus
FBgn0036277	CG10418	96	95.604	ENSPPAG00000032431	LSM2	96	95.604	Pan_paniscus
FBgn0036277	CG10418	96	95.604	ENSPPRG00000015353	LSM2	96	95.604	Panthera_pardus
FBgn0036277	CG10418	95	95.556	ENSPTIG00000010303	LSM2	95	95.556	Panthera_tigris_altaica
FBgn0036277	CG10418	96	95.604	ENSPTRG00000017986	LSM2	96	95.604	Pan_troglodytes
FBgn0036277	CG10418	96	95.604	ENSPANG00000024577	LSM2	96	95.604	Papio_anubis
FBgn0036277	CG10418	96	95.604	ENSPKIG00000007028	si:ch73-14h10.2	96	95.604	Paramormyrops_kingsleyae
FBgn0036277	CG10418	95	95.556	ENSPSIG00000004458	LSM2	75	95.556	Pelodiscus_sinensis
FBgn0036277	CG10418	95	93.333	ENSPMGG00000018511	si:ch73-14h10.2	96	93.333	Periophthalmus_magnuspinnatus
FBgn0036277	CG10418	95	95.556	ENSPCIG00000018560	-	91	95.556	Phascolarctos_cinereus
FBgn0036277	CG10418	96	95.604	ENSPFOG00000001621	si:ch73-14h10.2	96	95.604	Poecilia_formosa
FBgn0036277	CG10418	96	95.604	ENSPLAG00000017165	si:ch73-14h10.2	96	95.604	Poecilia_latipinna
FBgn0036277	CG10418	96	95.604	ENSPMEG00000019574	si:ch73-14h10.2	96	95.604	Poecilia_mexicana
FBgn0036277	CG10418	95	94.444	ENSPREG00000016534	si:ch73-14h10.2	96	94.444	Poecilia_reticulata
FBgn0036277	CG10418	96	95.604	ENSPPYG00000016461	-	52	95.604	Pongo_abelii
FBgn0036277	CG10418	96	95.604	ENSPCAG00000013737	LSM2	96	95.604	Procavia_capensis
FBgn0036277	CG10418	96	95.604	ENSPCOG00000020134	LSM2	96	95.604	Propithecus_coquereli
FBgn0036277	CG10418	96	95.604	ENSPVAG00000012405	LSM2	96	95.604	Pteropus_vampyrus
FBgn0036277	CG10418	96	95.604	ENSPNYG00000019298	smx5	96	95.604	Pundamilia_nyererei
FBgn0036277	CG10418	96	95.604	ENSPNAG00000027769	si:ch73-14h10.2	96	95.604	Pygocentrus_nattereri
FBgn0036277	CG10418	56	88.679	ENSRNOG00000011065	AC126899.1	76	88.679	Rattus_norvegicus
FBgn0036277	CG10418	96	95.604	ENSRNOG00000048725	Lsm2	96	95.604	Rattus_norvegicus
FBgn0036277	CG10418	75	83.099	ENSRBIG00000011356	-	87	83.099	Rhinopithecus_bieti
FBgn0036277	CG10418	96	95.604	ENSRBIG00000010172	LSM2	96	95.604	Rhinopithecus_bieti
FBgn0036277	CG10418	96	95.604	ENSRROG00000030345	LSM2	96	95.604	Rhinopithecus_roxellana
FBgn0036277	CG10418	75	83.099	ENSRROG00000030708	-	87	83.099	Rhinopithecus_roxellana
FBgn0036277	CG10418	100	64.211	YBL026W	LSM2	100	64.211	Saccharomyces_cerevisiae
FBgn0036277	CG10418	96	95.604	ENSSBOG00000018943	LSM2	96	95.604	Saimiri_boliviensis_boliviensis
FBgn0036277	CG10418	96	95.604	ENSSFOG00015006734	lsm2	96	95.604	Scleropages_formosus
FBgn0036277	CG10418	96	95.604	ENSSMAG00000001122	si:ch73-14h10.2	96	95.604	Scophthalmus_maximus
FBgn0036277	CG10418	96	95.604	ENSSDUG00000021605	smx5	96	95.604	Seriola_dumerili
FBgn0036277	CG10418	96	95.604	ENSSLDG00000002765	si:ch73-14h10.2	96	95.604	Seriola_lalandi_dorsalis
FBgn0036277	CG10418	96	95.604	ENSSPUG00000009631	LSM2	96	95.604	Sphenodon_punctatus
FBgn0036277	CG10418	96	95.604	ENSSPAG00000016904	si:ch73-14h10.2	96	95.604	Stegastes_partitus
FBgn0036277	CG10418	96	95.604	ENSSSCG00000039021	LSM2	96	95.604	Sus_scrofa
FBgn0036277	CG10418	95	94.444	ENSTRUG00000002093	si:ch73-14h10.2	96	94.444	Takifugu_rubripes
FBgn0036277	CG10418	69	92.424	ENSTNIG00000013770	si:ch73-14h10.2	99	92.424	Tetraodon_nigroviridis
FBgn0036277	CG10418	96	95.604	ENSTTRG00000014131	LSM2	96	95.604	Tursiops_truncatus
FBgn0036277	CG10418	95	95.556	ENSUMAG00000013425	LSM2	63	95.556	Ursus_maritimus
FBgn0036277	CG10418	95	95.556	ENSVPAG00000001761	LSM2	96	95.556	Vicugna_pacos
FBgn0036277	CG10418	75	94.366	ENSVVUG00000016264	-	88	94.366	Vulpes_vulpes
FBgn0036277	CG10418	96	96.703	ENSXETG00000024077	lsm2	96	96.703	Xenopus_tropicalis
FBgn0036277	CG10418	95	94.444	ENSXCOG00000006078	si:ch73-14h10.2	96	94.444	Xiphophorus_couchianus
FBgn0036277	CG10418	95	94.444	ENSXMAG00000028018	si:ch73-14h10.2	96	94.444	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005688	U6 snRNP	10908584.	NAS	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component